These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4870#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 932 fasta sequence [GAACTGTTGGCCCACTGGCTTTTTCCGGTCGGCCATCAGTGCCAGTGAAA-ACATTTCACTAAGCCAAAAT-GG-GTAAGATTATGAAATCTGGTAAGGTGGTACTCGTCCTCGGTGGACGGTACGCCGGTCGCAAGGCTATCATCATGAAGACGTTCGATGACGGCACGTCGGACAAGCAGTTCGGCCAGGCCCTCGTTGCCGGCATCGATCGCTACCCGCGACGTGTGACGCGAAACATGAGCAAGGATCGCATCCACAAGCGTTGCAAGATCAAGCCCTTCATCAAGATGCTGAACTACAACCATCTGATGCCGACGCGCTACAGCGTGCCAGATGTGAACCTGGACAGCAAGTTCGAGGAGCGACACAAGACCGGCAAGAATAAGTGGTTCTTCCAGAAGCTCCGTTTCTAAGGCAACAACCTACTGTGCACAGAGGGGAAGACTCCGATGGAACCGGGCGGTGGGCGGAAGTAAAGAAGTCAGAGAGTACGAGTTTATCGCAGCGGGGATGTATCTTCTGCGTGCGGGTGTGTCATTTCCGGCCGTTTTTTGCACGCGGCTGGTGGCGGCGTTGGTTGTGCAGTGTGTGGCGTGCTGGGGCAGCGATGCACTCCGAGTTGTGAGGTGTGTGTGTACATGTGTATGTGATGGTGTGCTTTTTTGAGGAAGAATCGAAGAAGAAAAGTCCACACACACGCACCCGGCCGAGGGGTTATCCATCCATCCAATCCAGATCGTGTCCATCTGCTCCTGCCCCGCTGGACAGCCATGTAAACTGATTCGGAACCGGAACAGCATTCATCGGTTCCGTGGTGTGAACGGTCGGAGAAGAAAGCACAGGCTCGTTTTGGATACCCAATAAATTCGTGTTATCTACTTGG-AAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCGGGGGG] [-] EMBL CNS095JX [GAACTGTTGGCCCACTGGCTTTTTCCGGTCGGCCATCAGTGCCAGTGAAACACATTTCACTAAGCCAAAAT GG GTAAGATTATGAAATCTGGTAAGGTGGTACTCGTCCTCGGTGGACGGTACGCCGGTCGCAAGGCTATCATCATGAAGACGTTCGATGACGGCACGTCGGACAAGCAGTTCGGCCAGGCCCTCGTTGCCGGCATCGATCGCTACCCGCGACGTGTGACGCGAAACATGAGCAAGGATCGCATCCACAAGCGTTGCAAGATCAAGCCCTTCATCAAGATGCTGAACTACAACCATCTGATGCCGACGCGCTACAGCGTGCCAGATGTGAACCTGGACAGCAAGTTCGAGGAGCGACACAAGACCGGCAAGAATAAGTGGTTCTTCCAGAAGCTCCGTTTTTAAGGCAACAACCTACTGTGCACAGAGGGGAAAACTCCGATGGAACCGGGCGGTGGGCGGAAGTAAAGAAGTCAGAGAGTACGAGTTTATCGCAGCGGGGATGTATCTTCTGCGTGCGGGTGTGTCATTTCCGGCCGTTTTTTGCACGCGGCTGGTGGCGGCGTTGGTTGTGCAGTTTGTGGCGTGCTGGGGCAGCGATGCACTCCGAGTTGTGAGGTGTGTGTGTACATGTGTATGTGATGGTGTGCTTTTTTGAGGAAGAATCGAAGAAGAAAAGTCCAAACACACGCACCCGGCCGAGGGGTTATCCATCCATCCAATCCAGATCGTGTCCATCTGCTCCTGCCCCGCTGGACAGCCATGTAAACTGATTCGGAACCGGGACAGCATTCATCGGTTCCGTGGTGTGAACGGTCGGAGAAGAAAGGACAGGCTCGTTTTGGATACCCAATAAATTCGTGTTATCTACTTGG AAA ] [+] EMBL CNS095JW [ TTTTTCGGTCGGCCATCAGTGCCAGTGAAA ACATTTCACTAAGCCAAAAT GGTGTAAGATTATGAAATCTGGTAAGGTGGTACTCGTCCTCGGTGGACGGTACGCCGGTCGCAAGGCTATCATCATGAAGACGTTCGATGACGGCACGTCGGACAAGCAGTTCGGCCAGGCCCTCGTTGCCGGCATCGATCGCTACCCGCGACGTGTGACGCGAAACATGAGCAAGGATCGCATCCACAAGCGTTGCAAGATCAAGCCCTTCATCAAGATGCTGAACTACAACCATCTGATGCCGACGCGCTACAGCGTGCCAGATGTGAACCTGGACAGCAAGTTCGAGGAGCGACACAAGACCGGCAAGAATAAGTGGTTCTTCCAGAAGCTCCGTTTCTAAGGCAACAACCTACTGTGCACAGAGGGGAAGACTCCGATGGAACCGGGCGGTGGGCGGAAGTAAAGAAGTCAGAGAGTACGAGTTTATCGCAGCGGGGATGTATCTTCTGCGTGCGGGTGTGTCATTTCCGGCCGTTTTTTGCACGCGGCTGGTGGCGGCGTTGGTTGTGCAGTGTGTGGCGTGCTGGGGCAGCGATGCACTCCGAGTTGTGAGGTGTGTGTGTACATGTGTATGTGATGGTGTGCTTTTTTGAGGAAGAATCGAAGAAGAAAAGTCCACACACACGCACCCGGCCGAGGGGTTATCCATCCATCCAATCCAGATCGTGTCCATCTGCTCCTGCCCCGCTGGACAGCCATGTAAACTGATTCGGAACCGGAACAGCATTCATCGGTTCCGTGGTGTGAACGGTCGGAGAAGAAAGCACAGGCTCGTTTTGGATACCCAATAAATTCGTGTTATCTACTTGG AAAAAAAAAAAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCGGGGGG] [+] EMBL CNS095SD [ acGTCGGCCATCAGTGCCAGTGAAA ACATTTCACTAAGCCAAAATGGG GTAAGATTATGAAATCTGGTAAGGTGGTACTCGTCCTCGGTGGACGGTACGCCGGTCGCAAGGCTATCATCATGAAGACGTTCGATGACGGCACGTCGGACAAGCAGTTCGGCCAGGCCCTCGTTGCCGGCATCGATCGCTACCCGCGACGTGTGACGCGAAACATGAGCAAGGATCGCATCCACAAGCGTTGCAAGATCAAGCCCTTCATCAAGATGCTGAACTACAACCATCTGATGCCGACGCGCTACAGCGTGCCAGATGTGAACCTGGACAGCAAGTTCGAGGAGCGACACAAGACCGGCAAGAATAAGTGGTTCTTCCAGAAGCTCCGTTTCTAAGGCAACAACCTACTGTGCACAGAGGGGAAGACTCCGATGGAACCGGGCGGTGGGCGGAAGTAAAGAAGTCAGAGAGTACGAGTTTATCGCAGCGGGGATGTATCTTCTGCGTGCGGGTGTGTCATTTCCGGCCGTTTTTTGCACGCGGCTGGTGGCGGCGTTGGTTGTGCAGTGTGTGGCGTGCTGGGGCAGCGATGCACTCCGAGTTGTGAGGTGTGTGTGTACATGTGTATGTGATGGTGTGCTTTTTTGAGGAAGAATCGAAGAAGAAAAGTCCACACACACGCACCCGGCCGAGGGGTTATCCATCCATCCAATCCAGATCGTGTCCATCTGCTCCTGCCCCGCTGGACAGCCATGTAAACTGATTCGGAACCGGAACAACATTCATCGGTTCCGTGGTGTGAACGGTCGGAGAAGAAAGCACAGGCTCGTTTTGGATACCCAATAAATTCGTGTTATCTACTTGGAAAAAAAAAAAAAAAAAAAAAAAAAAGGCCA ATGTGCCC ] consensusID : consensus_4870#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 883 fasta sequence [ATTTAAAACATTTCACTAAGCAAAATGGGTAAGATTATGAATCTGGTAAGGTGGTACTCGTCCTCGGTGGACGGTACGCCGGTCGCAAGGCTATCATCATGAAGACGTTCGATGACGGCACGTCGGACAAGCAGTTCGGCCAGGCCCTCGTTGCCGGCATCGATCGCTACCCGCGACGTGTGACGCGAAACATGAGCAAGGATCGCATCCACAAGCGTTGCAAGATCAAGCCCTTCATCAAGATGCTGAACTACAACCATCTGATGCCGACGCGCTACAGCGTACCAGATCCGCTGCAAGTTCGAGGAGCGACACAAGACCGGCAAGAACAAGTGGTTCTTCCAGAAGCTCCGTTTCTAAGGCAACAACCTACTGTGCACAGAGGGGAAGACTCCGATGGAACCGGGCGGTGGGCGGAAGTAAAGAAGTCAGAGAGTACGAGTTTATCGCAGCGGGGATGTATCTTCTGCGTGCGGGTGTGTCATTTCCGGCCGTTTTTTGCACGCGGCTGGTGGCGGTGTTGGTGGTGCAGTGTGTGGCGAGCTGGGGCAGCGATGCACTCCGAGTTGTGTAGTGTGTGTATACATGTGTATGTGATGGTGTGCTTTTTTGAGGAAGAATCGAAGAAGAAAAGTCCACACACACGCACCCGGCCGAGGGGTTATCCATCCATCCAATCCAGATCGTGTCCATCTGCTCCTGCCCCGCTGGACAGCCATGTAAACTGATTCGGAACCGGAACAACATTCATCGGTTCCGTGGTGTGAACGGTCGGAGAGGAAAGCACAGGCTCGTTTAGGATACCCAATAAATTCGTGTTATCTACTTGGAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCACATGTCCTCCACCTT] [+] EMBL CNS09755 [ATTTAAAACATTTCACTAAGCAAAATGGGTAAGATTATGAATCTGGTAAGGTGGTACTCGTCCTCGGTGGACGGTACGCCGGTCGCAAGGCTATCATCATGAAGACGTTCGATGACGGCACGTCGGACAAGCAGTTCGGCCAGGCCCTCGTTGCCGGCATCGATCGCTACCCGCGACGTGTGACGCGAAACATGAGCAAGGATCGCATCCACAAGCGTTGCAAGATCAAGCCCTTCATCAAGATGCTGAACTACAACCATCTGATGCCGACGCGCTACAGCGTACCAGATCCGCTGCAAGTTCGAGGAGCGACACAAGACCGGCAAGAACAAGTGGTTCTTCCAGAAGCTCCGTTTCTAAGGCAACAACCTACTGTGCACAGAGGGGAAGACTCCGATGGAACCGGGCGGTGGGCGGAAGTAAAGAAGTCAGAGAGTACGAGTTTATCGCAGCGGGGATGTATCTTCTGCGTGCGGGTGTGTCATTTCCGGCCGTTTTTTGCACGCGGCTGGTGGCGGTGTTGGTGGTGCAGTGTGTGGCGAGCTGGGGCAGCGATGCACTCCGAGTTGTGTAGTGTGTGTATACATGTGTATGTGATGGTGTGCTTTTTTGAGGAAGAATCGAAGAAGAAAAGTCCACACACACGCACCCGGCCGAGGGGTTATCCATCCATCCAATCCAGATCGTGTCCATCTGCTCCTGCCCCGCTGGACAGCCATGTAAACTGATTCGGAACCGGAACAACATTCATCGGTTCCGTGGTGTGAACGGTCGGAGAGGAAAGCACAGGCTCGTTTAGGATACCCAATAAATTCGTGTTATCTACTTGGAAAAAGGAAAAAAAAAAAAAAAAAAAAAAAAAAAGGCACATGTCCTCCACCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4870#0 GAACTGTTGGCCCACTGGCTTTTTCCGGTCGGCCATCAGTGCCAGTGAAAACATTTCACT 60 consensus_4870#1 -------------------------------------------ATTTAAAACATTTCACT 17 * * ************* consensus_4870#0 AAGCCAAAATGGGTAAGATTATGAAATCTGGTAAGGTGGTACTCGTCCTCGGTGGACGGT 120 consensus_4870#1 AAGC-AAAATGGGTAAGATTATGAA-TCTGGTAAGGTGGTACTCGTCCTCGGTGGACGGT 75 **** ******************** ********************************** consensus_4870#0 ACGCCGGTCGCAAGGCTATCATCATGAAGACGTTCGATGACGGCACGTCGGACAAGCAGT 180 consensus_4870#1 ACGCCGGTCGCAAGGCTATCATCATGAAGACGTTCGATGACGGCACGTCGGACAAGCAGT 135 ************************************************************ consensus_4870#0 TCGGCCAGGCCCTCGTTGCCGGCATCGATCGCTACCCGCGACGTGTGACGCGAAACATGA 240 consensus_4870#1 TCGGCCAGGCCCTCGTTGCCGGCATCGATCGCTACCCGCGACGTGTGACGCGAAACATGA 195 ************************************************************ consensus_4870#0 GCAAGGATCGCATCCACAAGCGTTGCAAGATCAAGCCCTTCATCAAGATGCTGAACTACA 300 consensus_4870#1 GCAAGGATCGCATCCACAAGCGTTGCAAGATCAAGCCCTTCATCAAGATGCTGAACTACA 255 ************************************************************ consensus_4870#0 ACCATCTGATGCCGACGCGCTACAGCGTGCCAGATGTGAACCTGGACAGCAAGTTCGAGG 360 consensus_4870#1 ACCATCTGATGCCGACGCGCTACAGCGTACCAGATCCG--------CTGCAAGTTCGAGG 307 **************************** ****** * * ************ consensus_4870#0 AGCGACACAAGACCGGCAAGAATAAGTGGTTCTTCCAGAAGCTCCGTTTCTAAGGCAACA 420 consensus_4870#1 AGCGACACAAGACCGGCAAGAACAAGTGGTTCTTCCAGAAGCTCCGTTTCTAAGGCAACA 367 ********************** ************************************* consensus_4870#0 ACCTACTGTGCACAGAGGGGAAGACTCCGATGGAACCGGGCGGTGGGCGGAAGTAAAGAA 480 consensus_4870#1 ACCTACTGTGCACAGAGGGGAAGACTCCGATGGAACCGGGCGGTGGGCGGAAGTAAAGAA 427 ************************************************************ consensus_4870#0 GTCAGAGAGTACGAGTTTATCGCAGCGGGGATGTATCTTCTGCGTGCGGGTGTGTCATTT 540 consensus_4870#1 GTCAGAGAGTACGAGTTTATCGCAGCGGGGATGTATCTTCTGCGTGCGGGTGTGTCATTT 487 ************************************************************ consensus_4870#0 CCGGCCGTTTTTTGCACGCGGCTGGTGGCGGCGTTGGTTGTGCAGTGTGTGGCGTGCTGG 600 consensus_4870#1 CCGGCCGTTTTTTGCACGCGGCTGGTGGCGGTGTTGGTGGTGCAGTGTGTGGCGAGCTGG 547 ******************************* ****** *************** ***** consensus_4870#0 GGCAGCGATGCACTCCGAGTTGTGAGGTGTGTGTGTACATGTGTATGTGATGGTGTGCTT 660 consensus_4870#1 GGCAGCGATGCACTCCGAGTTGTGTAGTGTGTGTATACATGTGTATGTGATGGTGTGCTT 607 ************************ ******** ************************* consensus_4870#0 TTTTGAGGAAGAATCGAAGAAGAAAAGTCCACACACACGCACCCGGCCGAGGGGTTATCC 720 consensus_4870#1 TTTTGAGGAAGAATCGAAGAAGAAAAGTCCACACACACGCACCCGGCCGAGGGGTTATCC 667 ************************************************************ consensus_4870#0 ATCCATCCAATCCAGATCGTGTCCATCTGCTCCTGCCCCGCTGGACAGCCATGTAAACTG 780 consensus_4870#1 ATCCATCCAATCCAGATCGTGTCCATCTGCTCCTGCCCCGCTGGACAGCCATGTAAACTG 727 ************************************************************ consensus_4870#0 ATTCGGAACCGGAACAGCATTCATCGGTTCCGTGGTGTGAACGGTCGGAGAAGAAAGCAC 840 consensus_4870#1 ATTCGGAACCGGAACAACATTCATCGGTTCCGTGGTGTGAACGGTCGGAGAGGAAAGCAC 787 **************** ********************************** ******** consensus_4870#0 AGGCTCGTTTTGGATACCCAATAAATTCGTGTTATCTACTTGGAAAAA--------AAAA 892 consensus_4870#1 AGGCTCGTTTAGGATACCCAATAAATTCGTGTTATCTACTTGGAAAAAGGAAAAAAAAAA 847 ********** ************************************* **** consensus_4870#0 AAAAAAAAAAAAAAAAGGCCACATGTGCCCGGGCGGGGGG 932 consensus_4870#1 AAAAAAAAAAAAAAAAAGGCACATGTCCTCCACCTT---- 883 **************** * ******* * * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||