These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4874#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 912 fasta sequence [TTTTTTTTGTTGTGTGTTTATGTAGGTGTATCTGTGCTATATAAACGGTTTTCTTCTCGGCTGGAAATTTGGAACTTCTTATACAACACGAATAGTTCACTTGTCGGCTGCCTCACCGCGTGCCATATCCTCCCTTCCAGTACACAATTCACTTCATCCACGGCTTCGATTCACAAAACAATAATATTTTACTGCAACTCACAGAACTACACACAAGCACCTTTCGCATCATTCGTTACATTACATCATACTGCAGTGTTGTATGGATTTGCTGTTAATTATTGGTGGCTGTGGTTCCGTTTCTGTTGTTAAACAGTACTGCTGCTGCTGCTGTTTCCTCTCTTGTCTCTCGTACACCGCCACACGGTGGAGAACGGATGTTAGAACTGTTGTTGGCCATGCGGCAGGATTAGATGGCGTCGATTGCGTCGCCCTCCTCCGACGAGCTGTAGTCGTCGCCGAACTCGATATCGTCGTCCATGTCGTTCTCGACGAACGTCACCGTTTCGTTGATGCGCACCGACTCCGGGAACTCCGTGTCGGTGCTGTCGTCCTCCCGGCCGGACGGGGCCGCAAAAAGCTGGGCAAAGTCCTGCCCACTTTCGCGCACTTATTCGTACGTCCCGACTGCCTCCACCCGGCCGTGCATCATCACGACGATCTGGTCGGCGTTCTGCAGGTACTCAGCTGGGTGCGTCACCAGTATCACGATCTTGCCCCGCAGGTAGTCGCGCATGCAGTGGTCAAACAGGTGCCGGCCAACGTGCGAATCAACTGCGCTGAGTGGATCGTCGAGCAGGTACACTTCGGCCCGCCGGTACACCGCCCGGGCCAGGCTGATGCGTGCCTTCTGCCCGCCGGACAGCGATACACCGCGCTCGCCGACGATCGTTTTGTCGCCATCCGCAAACA] [+] EMBL CNS08HVP [TTTTTTTTGTTGTGTGTTTATGTAGGTGTATCTGTGCTATATAAACGGTTTTCTTCTCGGCTGGAAATTTGGAACTTCTTATACAACACGAATAGTTCACTTGTCGGCTGCCTCACCGCGTGCCATATCCTCCCTTCCAGTACACAATTCACTTCATCCACGGCTTCGATTCACAAAACAATAATATTTTACTGCAACTCACAGAACTACACACAAGCACCTTTCGCATCATTCGTTACATTACATCATACTGCAGTGTTGTATGGATTTGCTGTTAATTATTGGTGGCTGTGGTTCCGTTTCTGTTGTTAAACAGTACTGCTGCTGCTGCTGTTTCCTCTCTTGTCTCTCGTACACCGCCACACGGTGGAGAACGGATGTTAGAACTGTTGTTGGCCATGCGGCAGGATTAGATGGCGTCGATTGCGTCGCCCTCCTCCGACGAGCTGTAGTCGTCGCCGAACTCGATATCGTCGTCCATGTCGTTCTCGACGAACGTCACCGTTTCGTTGATGCGCACCGACTCCGGGAACTCCGTGTCGGTGCTGTCGTCCTCCCGGCCGGACGGGGCCGCAAAAAGCTGGGCAAAGTCCTGCCCACTTTCGCGCACTTATTCGTACGTCCCGACTGCCTCCACCCGGCCGTGCATCATCACGACGATCTGGTCGGCGTTCTGCAGGTACTCAGCTGGGTGCGTCACCAGTATCACGATCTTGCCCCGCAGGTAGTCGCGCATGCAGTGGTCAAACAGGTGCCGGCCAACGTGCGAATCAACTGCGCTGAGTGGATCGTCGAGCAGGTACACTTCGGCCCGCCGGTACACCGCCCGGGCCAGGCTGATGCGTGCCTTCTGCCCGCCGGACAGCGATACACCGCGCTCGCCGACGATCGTTTTGTCGCCATCCGCAAACA] consensusID : consensus_4874#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 518 fasta sequence [AGAATCGCACGAGGTTCAGAGAGCACAACAAAGATCCGGATTTTCTGTGGCCGTGCAGTTCAGCAGCAGTCCAACCGAACTAACTTCCAGCCGAGGAAAAGCTAAACCGGGGTTCAGCAGAATGGCATCCGTTACGTCGAAAACGCCAATGCTTCGTGCGGCAGCGGCCGTGGCTTTGNCGGCCATGCACAGGCTGGCGTGNCAGCCGTGGCTCGGCGAAGTGCAGACGAACAACCTGGCCAAAAGCTGGTTGTGGCATCGGCGACCGAACGCTGCCGTGTCGCGGATTTCCATCGTTTTCCGTGCCGGATCGCGCAACGAAACTGGCGATTGGCTCGGTGCGGGCCACGTCCTGCGTGCGGCAGGAGGGCTCTCCAACAAGACGGGCACCGGCTTCGGTATTACGCGCAACATTCAGCAGGCGGGCGGTAGCCTAACGAACGCGGCGACGTGAGCTGGTAACGTACAGCGTCAGCCGTGACGAAGGATCAGCTGGAGGTGGGCCAGAAGTACCTGGA] [+] EMBL AL696200 [AGAATCGCACGAGGTTCAGAGAGCACAACAAAGATCCGGATTTTCTGTGGCCGTGCAGTTCAGCAGCAGTCCAACCGAACTAACTTCCAGCCGAGGAAAAGCTAAACCGGGGTTCAGCAGAATGGCATCCGTTACGTCGAAAACGCCAATGCTTCGTGCGGCAGCGGCCGTGGCTTTGNCGGCCATGCACAGGCTGGCGTGNCAGCCGTGGCTCGGCGAAGTGCAGACGAACAACCTGGCCAAAAGCTGGTTGTGGCATCGGCGACCGAACGCTGCCGTGTCGCGGATTTCCATCGTTTTCCGTGCCGGATCGCGCAACGAAACTGGCGATTGGCTCGGTGCGGGCCACGTCCTGCGTGCGGCAGGAGGGCTCTCCAACAAGACGGGCACCGGCTTCGGTATTACGCGCAACATTCAGCAGGCGGGCGGTAGCCTAACGAACGCGGCGACGTGAGCTGGTAACGTACAGCGTCAGCCGTGACGAAGGATCAGCTGGAGGTGGGCCAGAAGTACCTGGA] consensusID : consensus_4874#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 452 fasta sequence [CCGCCCACGCGTCCGATTTAATTTAGCTTATTTATTTTATTAAGTTAATTTTTTAATTTAATAATTAAATAAAGTAATATTTTAAAGCTCATCCCTTAAAATATTACTTTATTTAATTATTAAATTAAAAAATTAACTTAATAAAATAAATAAAGTAATATTTTAAGGGATGAGCTTTAAAATAAAATTTTATATTTTTTATAATTTTTAAATAAATATAAGCTTAAAAATAGCTATTATTAATAAATTTGTTATAATTTATTTTTTATAAAAAATTATTTAATTTAAATTAAATTATTTATTAAAATTTAAATTTTAATAATAAAAATTTAGTAATTATGATAAAATTAGTATATAAATTTATATAAAGTAATTAATTTGATAGGTTTTAATGAAGAATTCGGCAAATTAAATATATTCACCTGTTTAACAAAAACATGTCTTTTTGTATT] [+] EMBL BM591275 [CCGCCCACGCGTCCGATTTAATTTAGCTTATTTATTTTATTAAGTTAATTTTTTAATTTAATAATTAAATAAAGTAATATTTTAAAGCTCATCCCTTAAAATATTACTTTATTTAATTATTAAATTAAAAAATTAACTTAATAAAATAAATAAAGTAATATTTTAAGGGATGAGCTTTAAAATAAAATTTTATATTTTTTATAATTTTTAAATAAATATAAGCTTAAAAATAGCTATTATTAATAAATTTGTTATAATTTATTTTTTATAAAAAATTATTTAATTTAAATTAAATTATTTATTAAAATTTAAATTTTAATAATAAAAATTTAGTAATTATGATAAAATTAGTATATAAATTTATATAAAGTAATTAATTTGATAGGTTTTAATGAAGAATTCGGCAAATTAAATATATTCACCTGTTTAACAAAAACATGTCTTTTTGTATT] consensusID : consensus_4874#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 88 fasta sequence [AGCGCGAACTGCAGCGAGCTCAGCTCCTGCCCGTCCAGCCCCTTGCCGTTGTTTTCGCCCTTTCTCGGCTGCCCCCGATGGCCGAACG] [+] EMBL CNS094A3 [AGCGCGAACTGCAGCGAGCTCAGCTCCTGCCCGTCCAGCCCCTTGCCGTTGTTTTCGCCCTTTCTCGGCTGCCCCCGATGGCCGAACG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4874#1 ------------------------------------------------------------ consensus_4874#3 ------------------------------------------------------------ consensus_4874#0 TTTTTTTTGTTGTGTGTTTATGTAGGTGTATCTGTGCTATATAAACGGTTTTCTTCTCGG 60 consensus_4874#2 ------------------------------------------------------------ consensus_4874#1 ------------------------------------------------------------ consensus_4874#3 ------------------------------------------------------------ consensus_4874#0 CTGGAAATTTGGAACTTCTTATACAACACGAATAGTTCACTTGTCGGCTGCCTCACCGCG 120 consensus_4874#2 ------------------------------------------------------------ consensus_4874#1 ------------------------------------------------------------ consensus_4874#3 ------------------------------------------------------------ consensus_4874#0 TGCCATATCCTCCCTTCCAGTACACAATTCACTTCATCCACGGCTTCGATTCACAAAACA 180 consensus_4874#2 ------------------------------------------------------------ consensus_4874#1 ------------------------------------------------------------ consensus_4874#3 ------------------------------------------------------------ consensus_4874#0 ATAATATTTTACTGCAACTCACAGAACTACACACAAGCACCTTTCGCATCATTCGTTACA 240 consensus_4874#2 ------------------------------------------------------------ consensus_4874#1 -------AGAATCGCACGAGGTTCAGAGAGCACAACAAAGATCCGGATTTTCTGT---GG 50 consensus_4874#3 ------------------------------------------------------------ consensus_4874#0 TTACATCATACTGCAGTGTTGTATGGATTTGCTGTTAATTATTGGTGGCTGTGGTTCCGT 300 consensus_4874#2 ------------------------------------------------------------ consensus_4874#1 CCGTGCAGTTCAGCAGCAGTCCAACCGAACTAACTTCCAGCCGAGGAAAAGCTAAACCGG 110 consensus_4874#3 ------------------------------------------------------------ consensus_4874#0 TTCTGTTGTTAAACAGTACTGCTGCTGCTGCTGTTTCCTCTCTTGTCTCTCGTACACCGC 360 consensus_4874#2 ------------------------------CCGCCCACGCGTCCGATTTAATTTAGCTTA 30 consensus_4874#1 GGTTCAGCAGAATGGCATCCGTTACGTCGAAAACGCCAATGCTTCGTGCGGCAGCGGCCG 170 consensus_4874#3 ----------------------------------------AGCGCGAACTGCAGCGAGCT 20 consensus_4874#0 CACACGGTGGAGAACGGATGTTAGAACTGTTGTTGGCCATGCGGCAGGATTAGATGGCGT 420 consensus_4874#2 TTTATTTTATTAAGTTAATTTTTTAATTTAATAATTAAATAAAGTAATATTTTAAAGCTC 90 consensus_4874#1 TGGCTTTGNC--GGCCATGC-ACAGGCTGGCG--TGNCAGCCGTGGCTCGGCGAAGTGCA 225 consensus_4874#3 CAGCTCCTGCCCGTCCAGCC-CCTTGCCGTTG--TTTTCGCCCTTTCTCGGC----TGCC 73 consensus_4874#0 CGATTGCGTCGCCCTCCTCCGACGAGCTGTAG--TCGTCGCCG-AACTCGATATCGTCGT 477 consensus_4874#2 ATCCCTTAAAATATTACTTTATTTAATTATTAAATTAAAAAATTAACTTAATAAAATAAA 150 * ** * consensus_4874#1 GACGAACAACCTGGCCAAAAGCTG--GTTGTGGCATCGGCGACCGAACGCTGCCGTGTCG 283 consensus_4874#3 CCCGA------TGGCCGAACG--------------------------------------- 88 consensus_4874#0 CCATGTCGTTCTCGACGAACGTCACCGTTTCGTTGATGCGCACCGACTCCGGGAACTCCG 537 consensus_4874#2 TAAAGTAA---TATTTTAAGGGATGAGCTTTAAAATAAAATTTTATATTTTTTATAATTT 207 * ** * consensus_4874#1 CGG-ATTTCCATCGTTTTCCGTGCCGGATCGCGCAACGAAA--CTGGCGATTGGCTCGGT 340 consensus_4874#3 ------------------------------------------------------------ consensus_4874#0 TGTCGGTGCTGTCGTCCTCCCGGCCGGACGGGGCCGCAAAAAGCTGGGCAAAGTCCTGCC 597 consensus_4874#2 TTAAATAAATATAAGCTTAAAAATAGCTATTATTAATAAATTTGTTATAATTTATTTTTT 267 consensus_4874#1 GCGGGCCACGTCCTGCGTGCGGCAGGAGGGCT--CTCCAACAAGACGGGCACCGGCTTCG 398 consensus_4874#3 ------------------------------------------------------------ consensus_4874#0 CACTTTCGCGCACTTATTCGTACGTCCCGACTG-CCTCCACCCGGCCGTGCATCATCACG 656 consensus_4874#2 ATAAAAAATTATTTAATTTAAATTAAATTATTTATTAAAATTTAAATTTTAATAATAAAA 327 consensus_4874#1 GTATTACGCGCAACATTCAGCAGG----CGGGCGGTAGCCTAACGAACGCGGCGACGTGA 454 consensus_4874#3 ------------------------------------------------------------ consensus_4874#0 ACGATCTGGTCGGCGTTCTGCAGGTACTCAGCTGGGTGCGTCACCAGTATCACGATCTTG 716 consensus_4874#2 ATTTAGTAATTATGATAAAATTAGTATATAAATTTATATAAAGTAATTAATTTGATAGGT 387 consensus_4874#1 GCTGGTAACGTACAGCGTCAGCCGTGACGAAGGATCAGCTGGAGGTGGGCCAGAAGTACC 514 consensus_4874#3 ------------------------------------------------------------ consensus_4874#0 CCCCGCAGGTAGTCGCGCATGCAGTGGTCAAACAGGTGCCGGCCAACGTGCGAATCAACT 776 consensus_4874#2 TTTAATGAAGAATTCGGCAAATTAAATATATTCACCTGTTTAACAAAAACATGTCTTTTT 447 consensus_4874#1 TGGA-------------------------------------------------------- 518 consensus_4874#3 ------------------------------------------------------------ consensus_4874#0 GCGCTGAGTGGATCGTCGAGCAGGTACACTTCGGCCCGCCGGTACACCGCCCGGGCCAGG 836 consensus_4874#2 GTATT------------------------------------------------------- 452 consensus_4874#1 ------------------------------------------------------------ consensus_4874#3 ------------------------------------------------------------ consensus_4874#0 CTGATGCGTGCCTTCTGCCCGCCGGACAGCGATACACCGCGCTCGCCGACGATCGTTTTG 896 consensus_4874#2 ------------------------------------------------------------ consensus_4874#1 ---------------- consensus_4874#3 ---------------- consensus_4874#0 TCGCCATCCGCAAACA 912 consensus_4874#2 ---------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||