These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4880#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1127 fasta sequence [CTTTGCCCGTTTGATTCTCGAACGTATTAGCTTACAATGAGAACCATCAACTCTAACCAGTCGGTGCTCGTACCGAAGATGTGTCGGTGAAGGTGAAGGCCCGCATGGTGACGGTGAAGGGCCCGCGCGGAACCTCGTCAAGAACTTCCGCCATCTGCCCATGACGTCTACCGAGTGCACCGCAAGAAGGTGACGGTGGAGAAGTGGTTCGGCTCCAAGAAGGAGCTGGCTGCCGTCCGCACCGTCTGCTCGCACATCGAGAACATGATCAAGGGTGTCACCAAGGGATTCCAGTACAAGATGCGTGCTGTACATGCTCACTTCCCGATCAACTGCGTGATCAGTGAGAACAACACGCTGGTGGAGATCCGTAACTTCCTCGGCGAGAAGCACATCCGTCGCGTGAAGATGCAGCCGGGCGTGACCGTGGTGAACTCCGCCAAGCAGAAGGACGAGCTGGTGCTCGAGGGTAACGACATCGAAGCGGTCTCCCTGTCCGCCGCCCTCATCCAGCAGTCGACGACCGTCCACAACAAGGATATCCCTCTTTTGTGATTTGTCGTG-AACTGTGCAGTGTTCTCTCCCGAGCTAAGGTCAATTTTTGACGACTTGCACGGTTTTATTGAAAAGAACCTCCCTGAAAAATGGCTCTTAACAAAGCTGAACTAGCCTGTGTTTACTCGGCACTGATTCTGGTCGATGATGATGTTGCCGTGACGGACGAGAAGATCGCAACCATCCTGAAGGCCGCCAACGTTGACATCGAGCCATACTGGCCTGGTCTGTTCGCAAAGGCCCTGGAAGGCATTGATGTCAAGAGCCTGATCACGAGCATCGGCTCAGGTGTGGGATCCGGTGGTGGTGCCCCAGCTGCTGCCGCTGGTGGTGCTGGTGCTGCCCCGGCTGCCGCCGAGAAGAAGGAGGAGAAGAAGGAAGAAGAACCAGAGGAATCCGATGATGACATGGGATTCGGTCTCTTCGGTTAGATCTTTCTCGCCGTGCTGGAATGTACAACGCAAAAGAGAGTTTATCTCTTTTTGCTGTACCGGTATTTGTACAACTATTCTGTACACATATGAATAAAACATTGAGATAAATACCTAAAAAAAAAAAAAAAAAAAGGCCAC] [+] EMBL CNS092RO [CTTTGCCCGTTTGATTCTCGAACGTATTAGCTTACAATGAGAACCATCAACTCTAACCAGTCGGTGCTCGTACCGAAGATGTGTCGGTGAAGGTGAAGGCCCGCATGGTGACGGTGAAGGGCCCGCGCGGAACCTCGTCAAGAACTTCCGCCATCTGCCCATGACGTCTACCGAGTGCACCGCAAGAAGGTGACGGTGGAGAAGTGGTTCGGCTCCAAGAAGGAGCTGGCTGCCGTCCGCACCGTCTGCTCGCACATCGAGAACATGATCAAGGGTGTCACCAAGGGATTCCAGTACAAGATGCGTGCTGTACATGCTCACTTCCCGATCAACTGCGTGATCAGTGAGAACAACACGCTGGTGGAGATCCGTAACTTCCTCGGCGAGAAGCACATCCGTCGCGTGAAGATGCAGCCGGGCGTGACCGTGGTGAACTCCGCCAAGCAGAAGGACGAGCTGGTGCTCGAGGGTAACGACATCGAAGCGGTCTCCCTGTCCGCCGCCCTCATCCAGCAGTCGACGACCGTCCACAACAAGGATATCCCTCTTTTGTGATTTGTCGTG AACTGTGCAGTGTTCTCTCCCGAGCTAAGGTCAATTTTTGACGACTTGCACGGTTTTATTGAAAAGAACCTCCCTGAAAAATGGCTCTTAACAAAGCTGAACTAGCCTGTGTTTACTCGGCACTGATTCTGGTCGATGATGATGTTGCCGTGACGGACGAGAAGATCGCAACCATCCTGAAGGCCGCCAACGTTGACATCGAGCCATACTGGCCTGGTCTGTTCGCAAAGGCCCTGGAAGGCATTGATGTCAAGAGCCTGATCACGAGCATCGGCTCAGGTGTGGGATCCGGTGGTGGTG CCCAGCTGCTGCCGCTGGTGGTGCTGGTGCTGCCCCGGCTGCCGCCGAGAAGAAGGAGGAGAAGAAGGAAGAAGAACCAGAGGAATCCGATGATGACATGGGATTCGG ] [-] EMBL CNS092RP [ GTGCACCGCAAGAAGGTGACGGTGGAGAAGTGGTTCGGCTCCAAGAAGGAGCTGGCTGCCGTCCGCACCGTCTGCTCGCACATCGAGAACATGATCAAGGGTGTCACCAAGGGATTCCAGTACAAGATGCGTGCTGTACATGCTCACTTCCCGATCAACTGCGTGATCAGTGAGAACAACACGCTGGTGGAGATCCGTAACTTCCTCGGCGAGAAGCACATCCGTCGCGTGAAGATGCAGCCGGGCGTGACCGTGGTGAACTCCGCCAAGCAGAAGGACGAGCTGGTGCTCGAGGGTAACGACATCGAAGCGGTCTCCCTGTCCGCCGCCCTCATCCAGCAGTCGACGACCGTCCACAACAAGGATATCCCTCTTTTGTGATTTGTCGTGAAACTGTGCAGTGTTCTCTCCCGAGCTAAGGTCAATTTTTGACGACTTGCACGGTTTTATTGAAAAGAACCTCCCTGAAAAATGGCTCTTAACAAAGCTGAACTAGCCTGTGTTTACTCGGCACTGATTCTGGTCGATGATGATGTTGCCGTGACGGACGAGAAGATCGCAACCATCCTGAAGGCCGCCAACGTTGACATCGAGCCATACTGGCCTGGTCTGTTCGCAAAGGCCCTGGAAGGCATTGATGTCAAGAGCCTGATCACGAGCATCGGCTCAGGTGTGGGATCCGGTGGTGGTGCCCCAGCTGCTGCCGCTGGTGGTGCTGGTGCTGCCCCCCCTGCCGCCGAGAAGAAGGAGGAGAAGAAGGAAGAAGAACCAGAGGAATCCGATGATGACATGGGATTCGGTCTCTTCGGTTAGATCTTTCTCGCCGTGCTGGAATGTACAACGCAAAAGAGAGTTTATCTCTTTTTGCTGTACCGGTATTTGTACAACTATTCTGTACACATATGAATAAAACATTGAGATAAA ] [+] EMBL CNS08O8B [ aaaaaaaCTCTTTTGTGATTTGTCGTG AAATGTGCAGTGTTCTCTCCCGAGCTAAGGTCAATTTTTGACGACTTGCACGGTTTTATTGAAAAGAACCTCCCTGAAAAATGGCTCTTAACAAAGCTGAACTAGCCTGTGTTTACTCGGCACTGATTCTGGTCGATGATGATGTTGCCGTGACGGACGAGAAGATCGCAACCATCCTGAAGGCCGCCAACGTTGACATCGAGCCATACTGGCCTGGTCTGTTCGCAAAGGCCCTGGAAGGCATTGATGTCAAGAGCCTGATCACGAGCATCGGCTCAGGTGTGGGATCCGGTGGTGGTGCCCCAGCTGCTGCCGCTGGTGGTGCTGGTGCTGCCCCGGCTGCCGCCGAGAAGAAGGAGGAGAAGAAGGAAGAAGAACCAGAGGAATCCGATGATGACATGGGATTCGGTCTCTTCGGTTAGATCTTTCTCGCCGTGCTGGAATGTACAACGCAAAAGAGAGTTTATCTCTTTTTGCTGTACCGGTATTTGTACAACTATTCTGTACACATATGAATAAAACATTGATATAAATACCTAAAAAAAAAAAAAAAAAAAGGCCAC] consensusID : consensus_4880#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 644 fasta sequence [CCCCGAGGTTATCTCCCGAGCTAAGGTCAATTTTTGACGACTTGCACGGTTTTATTGAAAAGAACCTCCCTGAAAAATGGCTCTTAACAAAGCTGAACTAGCCTGTGTTTACTCGGCACTGATTCTGGTCGATGATGATGTTGCCGTGACGGACGAGAAGATCTGCAACCATCCTGAAGGCCGCAACGTTGACATCGAGCCATACTGGCCTGGTCTGTTCGCAAAGGCCCTGGAAGGCACTTGATGTCCAGAGCCTGATCACGAGCATTCGGGCTCAGNGTGTGGGATCCGGTGGTGGTGCCCCAGCTGCTGCCGCTGGTGGTGCTGGTGCTGGCCCGGCTGCCGCGAGAAGAAGGAGGAGAAGAAGGAAGAAGAACACAGAGGAATCCGATGATTGACATGGGATTCGGTCTACTTCGGTTTAGATCTTTCTCGCCGTGCTGGCAATGTACAACGCACAAAGAGGAGNTTTATCTCTTTAGCTAGTANCGGGTACTTTGTACAACTATTCTGTACAACATATCACCTAACAACACTTGACTATAACATACCCTAAACACACNAACAANAAACAANAACAAACAAAAANANCACACAAAAAAAAAAAACAAANCGCACTCNTACGCACCNCCCGCAANCTCAAT] [+] EMBL AL694731 [CCCCGAGGTTATCTCCCGAGCTAAGGTCAATTTTTGACGACTTGCACGGTTTTATTGAAAAGAACCTCCCTGAAAAATGGCTCTTAACAAAGCTGAACTAGCCTGTGTTTACTCGGCACTGATTCTGGTCGATGATGATGTTGCCGTGACGGACGAGAAGATCTGCAACCATCCTGAAGGCCGCAACGTTGACATCGAGCCATACTGGCCTGGTCTGTTCGCAAAGGCCCTGGAAGGCACTTGATGTCCAGAGCCTGATCACGAGCATTCGGGCTCAGNGTGTGGGATCCGGTGGTGGTGCCCCAGCTGCTGCCGCTGGTGGTGCTGGTGCTGGCCCGGCTGCCGCGAGAAGAAGGAGGAGAAGAAGGAAGAAGAACACAGAGGAATCCGATGATTGACATGGGATTCGGTCTACTTCGGTTTAGATCTTTCTCGCCGTGCTGGCAATGTACAACGCACAAAGAGGAGNTTTATCTCTTTAGCTAGTANCGGGTACTTTGTACAACTATTCTGTACAACATATCACCTAACAACACTTGACTATAACATACCCTAAACACACNAACAANAAACAANAACAAACAAAAANANCACACAAAAAAAAAAAACAAANCGCACTCNTACGCACCNCCCGCAANCTCAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4880#0 CTTTGCCCGTTTGATTCTCGAACGTATTAGCTTACAATGAGAACCATCAACTCTAACCAG 60 consensus_4880#1 ------------------------------------------------------------ consensus_4880#0 TCGGTGCTCGTACCGAAGATGTGTCGGTGAAGGTGAAGGCCCGCATGGTGACGGTGAAGG 120 consensus_4880#1 ------------------------------------------------------------ consensus_4880#0 GCCCGCGCGGAACCTCGTCAAGAACTTCCGCCATCTGCCCATGACGTCTACCGAGTGCAC 180 consensus_4880#1 ------------------------------------------------------------ consensus_4880#0 CGCAAGAAGGTGACGGTGGAGAAGTGGTTCGGCTCCAAGAAGGAGCTGGCTGCCGTCCGC 240 consensus_4880#1 ------------------------------------------------------------ consensus_4880#0 ACCGTCTGCTCGCACATCGAGAACATGATCAAGGGTGTCACCAAGGGATTCCAGTACAAG 300 consensus_4880#1 ------------------------------------------------------------ consensus_4880#0 ATGCGTGCTGTACATGCTCACTTCCCGATCAACTGCGTGATCAGTGAGAACAACACGCTG 360 consensus_4880#1 ------------------------------------------------------------ consensus_4880#0 GTGGAGATCCGTAACTTCCTCGGCGAGAAGCACATCCGTCGCGTGAAGATGCAGCCGGGC 420 consensus_4880#1 ------------------------------------------------------------ consensus_4880#0 GTGACCGTGGTGAACTCCGCCAAGCAGAAGGACGAGCTGGTGCTCGAGGGTAACGACATC 480 consensus_4880#1 ------------------------------------------------------------ consensus_4880#0 GAAGCGGTCTCCCTGTCCGCCGCCCTCATCCAGCAGTCGACGACCGTCCACAACAAGGAT 540 consensus_4880#1 ------------------------------------------------------------ consensus_4880#0 ATCCCTCTTTTGTGATTTGTCGTGAACTGTGCAGTGTTCTCTCCCGAGCTAAGGTCAATT 600 consensus_4880#1 ----------------------------CCCCGAGGTTATCTCCCGAGCTAAGGTCAATT 32 * *** ********************* consensus_4880#0 TTTGACGACTTGCACGGTTTTATTGAAAAGAACCTCCCTGAAAAATGGCTCTTAACAAAG 660 consensus_4880#1 TTTGACGACTTGCACGGTTTTATTGAAAAGAACCTCCCTGAAAAATGGCTCTTAACAAAG 92 ************************************************************ consensus_4880#0 CTGAACTAGCCTGTGTTTACTCGGCACTGATTCTGGTCGATGATGATGTTGCCGTGACGG 720 consensus_4880#1 CTGAACTAGCCTGTGTTTACTCGGCACTGATTCTGGTCGATGATGATGTTGCCGTGACGG 152 ************************************************************ consensus_4880#0 ACGAGAAGATC-GCAACCATCCTGAAGGCCGCCAACGTTGACATCGAGCCATACTGGCCT 779 consensus_4880#1 ACGAGAAGATCTGCAACCATCCTGAAGGCCGC-AACGTTGACATCGAGCCATACTGGCCT 211 *********** ******************** *************************** consensus_4880#0 GGTCTGTTCGCAAAGGCCCTGGAAGGCA-TTGATGTCAAGAGCCTGATCACGAGCATC-- 836 consensus_4880#1 GGTCTGTTCGCAAAGGCCCTGGAAGGCACTTGATGTCCAGAGCCTGATCACGAGCATTCG 271 **************************** ******** ******************* consensus_4880#0 GGCTCAGG-TGTGGGATCCGGTGGTGGTGCCCCAGCTGCTGCCGCTGGTGGTGCTGGTGC 895 consensus_4880#1 GGCTCAGNGTGTGGGATCCGGTGGTGGTGCCCCAGCTGCTGCCGCTGGTGGTGCTGGTGC 331 ******* *************************************************** consensus_4880#0 TGCCCCGGCTGCCGCCGAGAAGAAGGAGGAGAAGAAGGAAGAAGAAC-CAGAGGAATCCG 954 consensus_4880#1 TGGCCCGGCTGCCGC-GAGAAGAAGGAGGAGAAGAAGGAAGAAGAACACAGAGGAATCCG 390 ** ************ ******************************* ************ consensus_4880#0 ATGAT-GACATGGGATTCGGTCT-CTTCGGTT-AGATCTTTCTCGCCGTGCTGG-AATGT 1010 consensus_4880#1 ATGATTGACATGGGATTCGGTCTACTTCGGTTTAGATCTTTCTCGCCGTGCTGGCAATGT 450 ***** ***************** ******** ********************* ***** consensus_4880#0 ACAACGCA---AAAGAGAGTTTATCTCTTTTTGCTGTACCGG-TA-TTTGTACAACTATT 1065 consensus_4880#1 ACAACGCACAAAGAGGAGNTTTATCTCTTTAGCTAGTANCGGGTACTTTGTACAACTATT 510 ******** * ** *********** *** *** ** ************** consensus_4880#0 CTGTACA-CATATGA----ATAAAACATTGAGATAA-ATACC-TAAAAAAAAAAAAAAAA 1118 consensus_4880#1 CTGTACAACATATCACCTAACAACACTTGACTATAACATACCCTAAACACACNAACAANA 570 ******* ***** * * ** ** * **** ***** **** * * ** ** * consensus_4880#0 AAAGGCCAC--------------------------------------------------- 1127 consensus_4880#1 AACAANAACAAACAAAAANANCACACAAAAAAAAAAAACAAANCGCACTCNTACGCACCN 630 ** ** consensus_4880#0 -------------- consensus_4880#1 CCCGCAANCTCAAT 644 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||