cluster # 4880

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Anopheles gambiae
cluster # 4880 cluster # 4880 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4880#0 length = 1127 sequences # 3

consensus_4880#1 length = 644 sequences # 1

consensusID : consensus_4880#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1127
fasta sequence

                              [CTTTGCCCGTTTGATTCTCGAACGTATTAGCTTACAATGAGAACCATCAACTCTAACCAGTCGGTGCTCGTACCGAAGATGTGTCGGTGAAGGTGAAGGCCCGCATGGTGACGGTGAAGGGCCCGCGCGGAACCTCGTCAAGAACTTCCGCCATCTGCCCATGACGTCTACCGAGTGCACCGCAAGAAGGTGACGGTGGAGAAGTGGTTCGGCTCCAAGAAGGAGCTGGCTGCCGTCCGCACCGTCTGCTCGCACATCGAGAACATGATCAAGGGTGTCACCAAGGGATTCCAGTACAAGATGCGTGCTGTACATGCTCACTTCCCGATCAACTGCGTGATCAGTGAGAACAACACGCTGGTGGAGATCCGTAACTTCCTCGGCGAGAAGCACATCCGTCGCGTGAAGATGCAGCCGGGCGTGACCGTGGTGAACTCCGCCAAGCAGAAGGACGAGCTGGTGCTCGAGGGTAACGACATCGAAGCGGTCTCCCTGTCCGCCGCCCTCATCCAGCAGTCGACGACCGTCCACAACAAGGATATCCCTCTTTTGTGATTTGTCGTG-AACTGTGCAGTGTTCTCTCCCGAGCTAAGGTCAATTTTTGACGACTTGCACGGTTTTATTGAAAAGAACCTCCCTGAAAAATGGCTCTTAACAAAGCTGAACTAGCCTGTGTTTACTCGGCACTGATTCTGGTCGATGATGATGTTGCCGTGACGGACGAGAAGATCGCAACCATCCTGAAGGCCGCCAACGTTGACATCGAGCCATACTGGCCTGGTCTGTTCGCAAAGGCCCTGGAAGGCATTGATGTCAAGAGCCTGATCACGAGCATCGGCTCAGGTGTGGGATCCGGTGGTGGTGCCCCAGCTGCTGCCGCTGGTGGTGCTGGTGCTGCCCCGGCTGCCGCCGAGAAGAAGGAGGAGAAGAAGGAAGAAGAACCAGAGGAATCCGATGATGACATGGGATTCGGTCTCTTCGGTTAGATCTTTCTCGCCGTGCTGGAATGTACAACGCAAAAGAGAGTTTATCTCTTTTTGCTGTACCGGTATTTGTACAACTATTCTGTACACATATGAATAAAACATTGAGATAAATACCTAAAAAAAAAAAAAAAAAAAGGCCAC]

[+] EMBL CNS092RO             [CTTTGCCCGTTTGATTCTCGAACGTATTAGCTTACAATGAGAACCATCAACTCTAACCAGTCGGTGCTCGTACCGAAGATGTGTCGGTGAAGGTGAAGGCCCGCATGGTGACGGTGAAGGGCCCGCGCGGAACCTCGTCAAGAACTTCCGCCATCTGCCCATGACGTCTACCGAGTGCACCGCAAGAAGGTGACGGTGGAGAAGTGGTTCGGCTCCAAGAAGGAGCTGGCTGCCGTCCGCACCGTCTGCTCGCACATCGAGAACATGATCAAGGGTGTCACCAAGGGATTCCAGTACAAGATGCGTGCTGTACATGCTCACTTCCCGATCAACTGCGTGATCAGTGAGAACAACACGCTGGTGGAGATCCGTAACTTCCTCGGCGAGAAGCACATCCGTCGCGTGAAGATGCAGCCGGGCGTGACCGTGGTGAACTCCGCCAAGCAGAAGGACGAGCTGGTGCTCGAGGGTAACGACATCGAAGCGGTCTCCCTGTCCGCCGCCCTCATCCAGCAGTCGACGACCGTCCACAACAAGGATATCCCTCTTTTGTGATTTGTCGTG AACTGTGCAGTGTTCTCTCCCGAGCTAAGGTCAATTTTTGACGACTTGCACGGTTTTATTGAAAAGAACCTCCCTGAAAAATGGCTCTTAACAAAGCTGAACTAGCCTGTGTTTACTCGGCACTGATTCTGGTCGATGATGATGTTGCCGTGACGGACGAGAAGATCGCAACCATCCTGAAGGCCGCCAACGTTGACATCGAGCCATACTGGCCTGGTCTGTTCGCAAAGGCCCTGGAAGGCATTGATGTCAAGAGCCTGATCACGAGCATCGGCTCAGGTGTGGGATCCGGTGGTGGTG CCCAGCTGCTGCCGCTGGTGGTGCTGGTGCTGCCCCGGCTGCCGCCGAGAAGAAGGAGGAGAAGAAGGAAGAAGAACCAGAGGAATCCGATGATGACATGGGATTCGG                                                                                                                                                          ]
[-] EMBL CNS092RP             [                                                                                                                                                                              GTGCACCGCAAGAAGGTGACGGTGGAGAAGTGGTTCGGCTCCAAGAAGGAGCTGGCTGCCGTCCGCACCGTCTGCTCGCACATCGAGAACATGATCAAGGGTGTCACCAAGGGATTCCAGTACAAGATGCGTGCTGTACATGCTCACTTCCCGATCAACTGCGTGATCAGTGAGAACAACACGCTGGTGGAGATCCGTAACTTCCTCGGCGAGAAGCACATCCGTCGCGTGAAGATGCAGCCGGGCGTGACCGTGGTGAACTCCGCCAAGCAGAAGGACGAGCTGGTGCTCGAGGGTAACGACATCGAAGCGGTCTCCCTGTCCGCCGCCCTCATCCAGCAGTCGACGACCGTCCACAACAAGGATATCCCTCTTTTGTGATTTGTCGTGAAACTGTGCAGTGTTCTCTCCCGAGCTAAGGTCAATTTTTGACGACTTGCACGGTTTTATTGAAAAGAACCTCCCTGAAAAATGGCTCTTAACAAAGCTGAACTAGCCTGTGTTTACTCGGCACTGATTCTGGTCGATGATGATGTTGCCGTGACGGACGAGAAGATCGCAACCATCCTGAAGGCCGCCAACGTTGACATCGAGCCATACTGGCCTGGTCTGTTCGCAAAGGCCCTGGAAGGCATTGATGTCAAGAGCCTGATCACGAGCATCGGCTCAGGTGTGGGATCCGGTGGTGGTGCCCCAGCTGCTGCCGCTGGTGGTGCTGGTGCTGCCCCCCCTGCCGCCGAGAAGAAGGAGGAGAAGAAGGAAGAAGAACCAGAGGAATCCGATGATGACATGGGATTCGGTCTCTTCGGTTAGATCTTTCTCGCCGTGCTGGAATGTACAACGCAAAAGAGAGTTTATCTCTTTTTGCTGTACCGGTATTTGTACAACTATTCTGTACACATATGAATAAAACATTGAGATAAA                              ]
[+] EMBL CNS08O8B             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         aaaaaaaCTCTTTTGTGATTTGTCGTG AAATGTGCAGTGTTCTCTCCCGAGCTAAGGTCAATTTTTGACGACTTGCACGGTTTTATTGAAAAGAACCTCCCTGAAAAATGGCTCTTAACAAAGCTGAACTAGCCTGTGTTTACTCGGCACTGATTCTGGTCGATGATGATGTTGCCGTGACGGACGAGAAGATCGCAACCATCCTGAAGGCCGCCAACGTTGACATCGAGCCATACTGGCCTGGTCTGTTCGCAAAGGCCCTGGAAGGCATTGATGTCAAGAGCCTGATCACGAGCATCGGCTCAGGTGTGGGATCCGGTGGTGGTGCCCCAGCTGCTGCCGCTGGTGGTGCTGGTGCTGCCCCGGCTGCCGCCGAGAAGAAGGAGGAGAAGAAGGAAGAAGAACCAGAGGAATCCGATGATGACATGGGATTCGGTCTCTTCGGTTAGATCTTTCTCGCCGTGCTGGAATGTACAACGCAAAAGAGAGTTTATCTCTTTTTGCTGTACCGGTATTTGTACAACTATTCTGTACACATATGAATAAAACATTGATATAAATACCTAAAAAAAAAAAAAAAAAAAGGCCAC]




>consensus_4880#0
CTTTGCCCGTTTGATTCTCGAACGTATTAGCTTACAATGAGAACCATCAACTCTAACCAG
TCGGTGCTCGTACCGAAGATGTGTCGGTGAAGGTGAAGGCCCGCATGGTGACGGTGAAGG
GCCCGCGCGGAACCTCGTCAAGAACTTCCGCCATCTGCCCATGACGTCTACCGAGTGCAC
CGCAAGAAGGTGACGGTGGAGAAGTGGTTCGGCTCCAAGAAGGAGCTGGCTGCCGTCCGC
ACCGTCTGCTCGCACATCGAGAACATGATCAAGGGTGTCACCAAGGGATTCCAGTACAAG
ATGCGTGCTGTACATGCTCACTTCCCGATCAACTGCGTGATCAGTGAGAACAACACGCTG
GTGGAGATCCGTAACTTCCTCGGCGAGAAGCACATCCGTCGCGTGAAGATGCAGCCGGGC
GTGACCGTGGTGAACTCCGCCAAGCAGAAGGACGAGCTGGTGCTCGAGGGTAACGACATC
GAAGCGGTCTCCCTGTCCGCCGCCCTCATCCAGCAGTCGACGACCGTCCACAACAAGGAT
ATCCCTCTTTTGTGATTTGTCGTGAACTGTGCAGTGTTCTCTCCCGAGCTAAGGTCAATT
TTTGACGACTTGCACGGTTTTATTGAAAAGAACCTCCCTGAAAAATGGCTCTTAACAAAG
CTGAACTAGCCTGTGTTTACTCGGCACTGATTCTGGTCGATGATGATGTTGCCGTGACGG
ACGAGAAGATCGCAACCATCCTGAAGGCCGCCAACGTTGACATCGAGCCATACTGGCCTG
GTCTGTTCGCAAAGGCCCTGGAAGGCATTGATGTCAAGAGCCTGATCACGAGCATCGGCT
CAGGTGTGGGATCCGGTGGTGGTGCCCCAGCTGCTGCCGCTGGTGGTGCTGGTGCTGCCC
CGGCTGCCGCCGAGAAGAAGGAGGAGAAGAAGGAAGAAGAACCAGAGGAATCCGATGATG
ACATGGGATTCGGTCTCTTCGGTTAGATCTTTCTCGCCGTGCTGGAATGTACAACGCAAA
AGAGAGTTTATCTCTTTTTGCTGTACCGGTATTTGTACAACTATTCTGTACACATATGAA
TAAAACATTGAGATAAATACCTAAAAAAAAAAAAAAAAAAAGGCCAC

consensusID : consensus_4880#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 644
fasta sequence

                              [CCCCGAGGTTATCTCCCGAGCTAAGGTCAATTTTTGACGACTTGCACGGTTTTATTGAAAAGAACCTCCCTGAAAAATGGCTCTTAACAAAGCTGAACTAGCCTGTGTTTACTCGGCACTGATTCTGGTCGATGATGATGTTGCCGTGACGGACGAGAAGATCTGCAACCATCCTGAAGGCCGCAACGTTGACATCGAGCCATACTGGCCTGGTCTGTTCGCAAAGGCCCTGGAAGGCACTTGATGTCCAGAGCCTGATCACGAGCATTCGGGCTCAGNGTGTGGGATCCGGTGGTGGTGCCCCAGCTGCTGCCGCTGGTGGTGCTGGTGCTGGCCCGGCTGCCGCGAGAAGAAGGAGGAGAAGAAGGAAGAAGAACACAGAGGAATCCGATGATTGACATGGGATTCGGTCTACTTCGGTTTAGATCTTTCTCGCCGTGCTGGCAATGTACAACGCACAAAGAGGAGNTTTATCTCTTTAGCTAGTANCGGGTACTTTGTACAACTATTCTGTACAACATATCACCTAACAACACTTGACTATAACATACCCTAAACACACNAACAANAAACAANAACAAACAAAAANANCACACAAAAAAAAAAAACAAANCGCACTCNTACGCACCNCCCGCAANCTCAAT]

[+] EMBL AL694731             [CCCCGAGGTTATCTCCCGAGCTAAGGTCAATTTTTGACGACTTGCACGGTTTTATTGAAAAGAACCTCCCTGAAAAATGGCTCTTAACAAAGCTGAACTAGCCTGTGTTTACTCGGCACTGATTCTGGTCGATGATGATGTTGCCGTGACGGACGAGAAGATCTGCAACCATCCTGAAGGCCGCAACGTTGACATCGAGCCATACTGGCCTGGTCTGTTCGCAAAGGCCCTGGAAGGCACTTGATGTCCAGAGCCTGATCACGAGCATTCGGGCTCAGNGTGTGGGATCCGGTGGTGGTGCCCCAGCTGCTGCCGCTGGTGGTGCTGGTGCTGGCCCGGCTGCCGCGAGAAGAAGGAGGAGAAGAAGGAAGAAGAACACAGAGGAATCCGATGATTGACATGGGATTCGGTCTACTTCGGTTTAGATCTTTCTCGCCGTGCTGGCAATGTACAACGCACAAAGAGGAGNTTTATCTCTTTAGCTAGTANCGGGTACTTTGTACAACTATTCTGTACAACATATCACCTAACAACACTTGACTATAACATACCCTAAACACACNAACAANAAACAANAACAAACAAAAANANCACACAAAAAAAAAAAACAAANCGCACTCNTACGCACCNCCCGCAANCTCAAT]




>consensus_4880#1
CCCCGAGGTTATCTCCCGAGCTAAGGTCAATTTTTGACGACTTGCACGGTTTTATTGAAA
AGAACCTCCCTGAAAAATGGCTCTTAACAAAGCTGAACTAGCCTGTGTTTACTCGGCACT
GATTCTGGTCGATGATGATGTTGCCGTGACGGACGAGAAGATCTGCAACCATCCTGAAGG
CCGCAACGTTGACATCGAGCCATACTGGCCTGGTCTGTTCGCAAAGGCCCTGGAAGGCAC
TTGATGTCCAGAGCCTGATCACGAGCATTCGGGCTCAGNGTGTGGGATCCGGTGGTGGTG
CCCCAGCTGCTGCCGCTGGTGGTGCTGGTGCTGGCCCGGCTGCCGCGAGAAGAAGGAGGA
GAAGAAGGAAGAAGAACACAGAGGAATCCGATGATTGACATGGGATTCGGTCTACTTCGG
TTTAGATCTTTCTCGCCGTGCTGGCAATGTACAACGCACAAAGAGGAGNTTTATCTCTTT
AGCTAGTANCGGGTACTTTGTACAACTATTCTGTACAACATATCACCTAACAACACTTGA
CTATAACATACCCTAAACACACNAACAANAAACAANAACAAACAAAAANANCACACAAAA
AAAAAAAACAAANCGCACTCNTACGCACCNCCCGCAANCTCAAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4880#0      CTTTGCCCGTTTGATTCTCGAACGTATTAGCTTACAATGAGAACCATCAACTCTAACCAG 60
consensus_4880#1      ------------------------------------------------------------
                                                                                  

consensus_4880#0      TCGGTGCTCGTACCGAAGATGTGTCGGTGAAGGTGAAGGCCCGCATGGTGACGGTGAAGG 120
consensus_4880#1      ------------------------------------------------------------
                                                                                  

consensus_4880#0      GCCCGCGCGGAACCTCGTCAAGAACTTCCGCCATCTGCCCATGACGTCTACCGAGTGCAC 180
consensus_4880#1      ------------------------------------------------------------
                                                                                  

consensus_4880#0      CGCAAGAAGGTGACGGTGGAGAAGTGGTTCGGCTCCAAGAAGGAGCTGGCTGCCGTCCGC 240
consensus_4880#1      ------------------------------------------------------------
                                                                                  

consensus_4880#0      ACCGTCTGCTCGCACATCGAGAACATGATCAAGGGTGTCACCAAGGGATTCCAGTACAAG 300
consensus_4880#1      ------------------------------------------------------------
                                                                                  

consensus_4880#0      ATGCGTGCTGTACATGCTCACTTCCCGATCAACTGCGTGATCAGTGAGAACAACACGCTG 360
consensus_4880#1      ------------------------------------------------------------
                                                                                  

consensus_4880#0      GTGGAGATCCGTAACTTCCTCGGCGAGAAGCACATCCGTCGCGTGAAGATGCAGCCGGGC 420
consensus_4880#1      ------------------------------------------------------------
                                                                                  

consensus_4880#0      GTGACCGTGGTGAACTCCGCCAAGCAGAAGGACGAGCTGGTGCTCGAGGGTAACGACATC 480
consensus_4880#1      ------------------------------------------------------------
                                                                                  

consensus_4880#0      GAAGCGGTCTCCCTGTCCGCCGCCCTCATCCAGCAGTCGACGACCGTCCACAACAAGGAT 540
consensus_4880#1      ------------------------------------------------------------
                                                                                  

consensus_4880#0      ATCCCTCTTTTGTGATTTGTCGTGAACTGTGCAGTGTTCTCTCCCGAGCTAAGGTCAATT 600
consensus_4880#1      ----------------------------CCCCGAGGTTATCTCCCGAGCTAAGGTCAATT 32
                                                     *   *** *********************

consensus_4880#0      TTTGACGACTTGCACGGTTTTATTGAAAAGAACCTCCCTGAAAAATGGCTCTTAACAAAG 660
consensus_4880#1      TTTGACGACTTGCACGGTTTTATTGAAAAGAACCTCCCTGAAAAATGGCTCTTAACAAAG 92
                      ************************************************************

consensus_4880#0      CTGAACTAGCCTGTGTTTACTCGGCACTGATTCTGGTCGATGATGATGTTGCCGTGACGG 720
consensus_4880#1      CTGAACTAGCCTGTGTTTACTCGGCACTGATTCTGGTCGATGATGATGTTGCCGTGACGG 152
                      ************************************************************

consensus_4880#0      ACGAGAAGATC-GCAACCATCCTGAAGGCCGCCAACGTTGACATCGAGCCATACTGGCCT 779
consensus_4880#1      ACGAGAAGATCTGCAACCATCCTGAAGGCCGC-AACGTTGACATCGAGCCATACTGGCCT 211
                      *********** ******************** ***************************

consensus_4880#0      GGTCTGTTCGCAAAGGCCCTGGAAGGCA-TTGATGTCAAGAGCCTGATCACGAGCATC-- 836
consensus_4880#1      GGTCTGTTCGCAAAGGCCCTGGAAGGCACTTGATGTCCAGAGCCTGATCACGAGCATTCG 271
                      **************************** ******** *******************   

consensus_4880#0      GGCTCAGG-TGTGGGATCCGGTGGTGGTGCCCCAGCTGCTGCCGCTGGTGGTGCTGGTGC 895
consensus_4880#1      GGCTCAGNGTGTGGGATCCGGTGGTGGTGCCCCAGCTGCTGCCGCTGGTGGTGCTGGTGC 331
                      *******  ***************************************************

consensus_4880#0      TGCCCCGGCTGCCGCCGAGAAGAAGGAGGAGAAGAAGGAAGAAGAAC-CAGAGGAATCCG 954
consensus_4880#1      TGGCCCGGCTGCCGC-GAGAAGAAGGAGGAGAAGAAGGAAGAAGAACACAGAGGAATCCG 390
                      ** ************ ******************************* ************

consensus_4880#0      ATGAT-GACATGGGATTCGGTCT-CTTCGGTT-AGATCTTTCTCGCCGTGCTGG-AATGT 1010
consensus_4880#1      ATGATTGACATGGGATTCGGTCTACTTCGGTTTAGATCTTTCTCGCCGTGCTGGCAATGT 450
                      ***** ***************** ******** ********************* *****

consensus_4880#0      ACAACGCA---AAAGAGAGTTTATCTCTTTTTGCTGTACCGG-TA-TTTGTACAACTATT 1065
consensus_4880#1      ACAACGCACAAAGAGGAGNTTTATCTCTTTAGCTAGTANCGGGTACTTTGTACAACTATT 510
                      ********   * **    ***********     *** *** ** **************

consensus_4880#0      CTGTACA-CATATGA----ATAAAACATTGAGATAA-ATACC-TAAAAAAAAAAAAAAAA 1118
consensus_4880#1      CTGTACAACATATCACCTAACAACACTTGACTATAACATACCCTAAACACACNAACAANA 570
                      ******* ***** *    * ** ** *    **** ***** **** * *  ** ** *

consensus_4880#0      AAAGGCCAC--------------------------------------------------- 1127
consensus_4880#1      AACAANAACAAACAAAAANANCACACAAAAAAAAAAAACAAANCGCACTCNTACGCACCN 630
                      **     **                                                   

consensus_4880#0      --------------
consensus_4880#1      CCCGCAANCTCAAT 644