These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4882#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1023 fasta sequence [CTCCTCTCCTAAACAGATGTTATATTTTTTTCTTCATCTTTCACAAGTTGTTATCGTGTGTGCTTCTTCTAACCTTCTGCTAGATACGATTCCAGCACAAGCTTTACACAGAAAGGTTTCTCCGCGGATGAGTGTGGAAAGGATTGATTGCGCGCGTACAACGCCCAGGAGAAACGTATCTGAGGAGAGTAGGAATGCAAAAAGGATACACACGCGCGCACACACAGTGTAAAAAAACTCCGATACGCACGACGCAGCATCCTCTCCTTTTCCCGCTCTGAACACTCCTCCCCATTATTCCCCACCGGGGCAGGAGAAAAAGAGAGGAGTGTTCGCCAAAAAACCGTACAAAACTAGCGCTTTAGATGATGCCGATCTTGTTGGCAATGTCGAGCGCATCGTAGTCGCGCGTTA-CCGCACGTACGCCTTCTTCTTGCCGTCCGGTCGCACCAGCGTGTTGATCTTCAGCACCTTCACGTCGTACAGCTTCCTCACGGCGGCCTTCACGTGGTTCTTGTTGGCGCGCAGGTGAATCAGGAAGACGAGCGTGTTGTTGTCCTCGATCTTCTTCATCGCCGCTTCGGTCGTCAGCGGGTACTTAATTATATTGTACGCATCCATGCGGCTGCGCTTGGCGACCGACTTCCTCGGGTACTTGGGACGACGCGGAAGCTTCAGGGTCTTCGGCCGCTTGAAGTGCACGGACGTCGGGATCTTGCGGACGCAGGTTCCATACGGACCCTTGACCAGCTTGGTCGAGGCACGCTTGGCACGCAGCATAGCGGTGGCACGAGCCTTCTGGATGCCCTTCTGGATCTTGGCCTTCACCTGCTCCTTGGTCAGCTTCGGGCGCGGGGACTTGGTCGTCTTCTTGCCCTTGGCATTGATACGGCGCACCGGCTTCTTCTTCTCTTTCTTTTCGGCCGGTTGGCGGCGGGCTTCTCAGCGGCCGGCTTCTTCTCGGCAGCGGGCTTCTTCTCAGCTGGTGCAGCCGCTGGCTTCTTCTCAGCAGCTGGCTTCTTC] [+] EMBL CNS09NJI [CTCCTCTCCTAAACAGATGTTATATTTTTTTCTTCATCTTTCACAAGTTGTTATCGTGTGTGCTTCTTCTAACCTTCTGCTAGATACGATTCCAGCACAAGCTTTACACAGAAAGGTTTCTCCGCGGATGAGTGTGGAAAGGATTGATTGCGCGCGTACAACGCCCAGGAGAAACGTATCTGAGGAGAGTAGGAATGCAAAAAGGATACACACGCGCGCACACACAGTGTAAAAAAACTCCGATACGCACGACGCAGCATCCTCTCCTTTTCCCGCTCTGAACACTCCTCCCCATTATTCCCCACCGGGGCAGGAGAAAAAGAGAGGAGTGTTCGCCAAAAAACCGTACAAAACTAGCGCTTTAGATGATGCCGATCTTGTTGGCAATGTCGAGCGCATCGTAGTCGCGCGTTA CCGCACGTACGCCTTCTTCTTGCCGTCCGGTCGCACCAGCGTGTTGATCTTCAGCACCTTCACGTCGTACAGCTTCCTCACGGCGGCCTTCACGTGGTTCTTGTTGGCGCGCAGGTGAATCAGGAAGACGAGCGTGTTGTTGTCCTCGATCTTCTTCATCGCCGCTTCGGTCGTCAGCGGGTACTTAATTATATTGTACGCATCCATGCGGCTGCGCTTGGCGACCGACTTCCTCGGGTACTTGGGACGACGCGGAAGCTTCAGGGTCTTCGGCCGCTTGAAGTGCACGGACGTCGGGATCTTGCGGACGCAGGTTCCATACGGACCCTTGACCAGCTTGGTCGAGGCACGCTTGGCACGCAGCATAGCGGTGGCACGAGCCTTCTGGATGCCCTTCTGGATCTTGGCCTTCACCTGCTCCTTGGTCAGCTTCGGGCGCGGGGACTTGGTCGTCTTCTTGCCCTTGGCATTGATACGGCGCACCGGCTTCTTCTTCTCTTTCTTTTCGGCCGGTTGGCGGCGGGCTTCTCAG ] [-] EMBL CNS08EVA [ ATACACACGCGCGCACACACAGTGTAAAAAAACTCCGATACGCACGACGCAGCATCCTCTCCTTTTCCCGCTCTGAACACTCCTCCCCATTATTCCCCACCGGGGCAGGAGAAAAAGAGAGGAGTGTTCGCCAAAAAACCGTACAAAACTAGCGCTTTAGATGATGCCGATCTTGTTGGCAATGTCGAGCGCATCGTAGTCGCGCGTTAGCCGCACGTACGCCTTCTTCTTGCCGTCCGGTCGCACCAGCGTGTTGATCTTCAGCACCTTCACGTCGTACAGCTTCCTCACGGCGGCCTTCACGTGGTTCTTGTTGGCGCGCAGGTGAATCAGGAAGACGAGCGTGTTGTTGTCCTCGATCTTCTTCATCGCCGCTTCGGTCGTCAGCGGGTACTTAATTATATTGTACGCATCCATGC GCTGCGCTTGGCGACCGACTTCCTCGGGTACTTGGGACGACGCGGAAGCTTCAGGGTCTTCGGCCGCTTGAAGTGCACGGACGTGCGGATCTTGCGGACGCAGGTTCCATACGGACCCTTGACCAGCTTGGTCGAGGCACGCTTGGCACGCAGCATAGCGGTGGCACGAGCCTTCTGGATGCCCTTCTGGATCTTGGCCTTCACCTGCTCCTTGGTCAGCTTCGGGCGCGGGGACTTGGTCGTCTTCTTGCCCTTGGCATTGATACGGCGCACCGGCTTCTTCTTCTC GC CAGCC TTGGCGGGCTTCTTCTCAGCGGCCGGCTTCTTCTCGGCAGCGGGCTTCTTCTCAGCTGGTGCAGCCGCTGGCTTCTTCTCAGCAGCTGGCTTCTTC] consensusID : consensus_4882#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 876 fasta sequence [AGGAGTGTTCGCCAAAAAACCGTACAAAACTAGCGCTTTAGATGATGCCGATCTTGTTGGCAATGTCGAGCGCATCGTAGTCGCGCGTTAGCCGCACGTACGCCTTCTTCTTGCCGTCCGGTCGCACCAGCGTGTTGATCTTCAGCACCTTCACGTCGTACAGCTTCCTCACGGCGGCCTTCACGTGGTTCTTGTTGGCGCGCAGGTGAATCAGGAAGACGAGCGTGTTGTTGTCCTCGATCTTCTTCATCGCCGCTTCGGTCGTCAGCGGGTACTTAATTATATTGTACGCATCCATGCGG-TGCGCTTGGCGACCGACTTCC-TCGGGTACTTGGGACGACGCGGAAGCTTCAGGGTCTTCGGCCGCTTGAAGTGCACGGACGTGCGGATCTTGCGGACGCAGGTTCCATACGGACCCTTGACCAGCTTGGTCGAGGCACGCTTGGC-ACGCAGCATAGCGGTGGCACGAGCCTTCTGGATGCCCTTCTGGATCTTGGCCTTCACCTGCTCCTTGGTCAGCTTCGGGCGCGGGGACTTGGTCGTCTTCTTGCCCTTGGCATTGATACGGCGCACCGGCTTCTTCTTCTCGCCAGCCTTGGCGGGCTTGC------C--AC----CGGCACGCTTCTCGGCCTTCTTCTCCTCGGCGGGCTTCTTCTCAGCGGCCGGCTTCTTCTCGGCAGCGGGCTTCTTCTCAGCTGGTGCAGCCGCTGGCTTCTTCTCAGCTGCTGGCTTCTTCTCCCGCCGCGGGCTTCTTTTCCGCTGCGGGTTTCTTCTCACCAGATCCGGAAGCCGTAGCAGCGGCGGCGGCTGCCGGCTTCTTCTCTTTCTTTTCGGCCGGTTGGCCGGCGGGCTTCTCAGACGGTTTCTTCGGACCCATAC] [-] EMBL CNS09RE0 [AGGAGTGTTCGCCAAAAAACCGTACAAAACTAGCGCTTTAGATGATGCCGATCTTGTTGGCAATGTCGAGCGCATCGTAGTCGCGCGTTAGCCGCACGTACGCCTTCTTCTTGCCGTCCGGTCGCACCAGCGTGTTGATCTTCAGCACCTTCACGTCGTACAGCTTCCTCACGGCGGCCTTCACGTGGTTCTTGTTGGCGCGCAGGTGAATCAGGAAGACGAGCGTGTTGTTGTCCTCGATCTTCTTCATCGCCGCTTCGGTCGTCAGCGGGTACTTAATTATATTGTACGCATCCATGCGG TGCGCTTGGCGACCGACTTCC TCGGGTACTTGGGACGACGCGGAAGCTTCAGGGTCTTCGGCCGCTTGAAGTGCACGGACGTGCGGATCTTGCGGACGCAGGTTCCATACGGACCCTTGACCAGCTTGGTCGAGGCACGCTTGGC ACGCAGCATAGCGGTGGCACGAGCCTTCTGGATGCCCTTCTGGATCTTGGCCTTCACCTGCTCCTTGGTCAGCTTCGGGCGCGGGGACTTGGTCGTCTTCTTGCCCTTGGCATTGATACGGCGCACCGGCTTCTTCTTCTCGCCAGCCTTGGCGGGCTTGC C AC CGGCACGCTTCTCGGCCTTCTTCTCCTCGGCGGGCTTCTTCTCAGCGGCCGGCTTCTTCTCGGCAGCGGGCTTCTTCTCAGCTGGTGCAGCCGCTGGCTTCTTCTCAGCTGCTGGCTTCTTCTCCCGCCGCGGGCTTCTTTTCCGCTGCGGGTTTCTTCTCACCAGATCCGGAAGCCGTAGCAGCGGCGGCGGCTGCCGGCTTCTTCTCTTTCTTTTCGGCCGGTTGGCCGGCGGGCTTCTCAGACGGTTTCTTCGGACCCATAC] [-] EMBL BM652071 [ AGACGAGCGTGTTGTTGTCCTCGATCTTCTTCATCGCCGCTTCGGTCGTCAGCGGGTACTTAATTATATTGTACGCATCCATGCGGCTGCGCTTGGCGACCGACTTCCTTCGGGTACTTGGGACGACGCGGAAGTTTCAGGGTCTTCGGCCGCTTGAAGTGCACGGACGTGCGGATCTTGCGGACGCAGGTTCCATACGGACCCTTGACCAGCTTGGTCGAGGCACGCTTGGCTACGCAGCATAGCGGTGGCACGAGCCTTCTGGATGCCCTTCTGGATCTTGGCCTTCACCTGCTCCTTGGTCAGCTTCGGGCGCGGGGACTTGGTCGTCTTCTTGCCCTTGGCATTGATACGGCGCACCGGCTTCTTCTTCTCGCCAGCCTTGGCGGGCTTGCTGTCGGCGGCCGGTGCGGCACGCTTCTCGGCCTTCTTCTCCTCGGCGGGCTTCTTCTCAGCGGCCGGCTTCTTCTCGGCAGCGGGCTTCTTCTCAGCTGGTGCAGCCGCTGGCTTCTTCTCAGCTGCTGGCTTCTTCT CCGCCGCGGGCTTCTTTTCCGCTGCGGGTTTCTTCTCACCAGATCCGGAAGCCGTAGCAGCGGCGGCGGCTGCCGGCTTCTTCTCTTTCTTTTCGGCCGGTTGGCCGGCGGGCTTCTCAGACGGTTTCTTCGGACCgg ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4882#0 CTCCTCTCCTAAACAGATGTTATATTTTTTTCTTCATCTTTCACAAGTTGTTATCGTGTG 60 consensus_4882#1 ------------------------------------------------------------ consensus_4882#0 TGCTTCTTCTAACCTTCTGCTAGATACGATTCCAGCACAAGCTTTACACAGAAAGGTTTC 120 consensus_4882#1 ------------------------------------------------------------ consensus_4882#0 TCCGCGGATGAGTGTGGAAAGGATTGATTGCGCGCGTACAACGCCCAGGAGAAACGTATC 180 consensus_4882#1 ------------------------------------------------------------ consensus_4882#0 TGAGGAGAGTAGGAATGCAAAAAGGATACACACGCGCGCACACACAGTGTAAAAAAACTC 240 consensus_4882#1 ------------------------------------------------------------ consensus_4882#0 CGATACGCACGACGCAGCATCCTCTCCTTTTCCCGCTCTGAACACTCCTCCCCATTATTC 300 consensus_4882#1 ------------------------------------------------------------ consensus_4882#0 CCCACCGGGGCAGGAGAAAAAGAGAGGAGTGTTCGCCAAAAAACCGTACAAAACTAGCGC 360 consensus_4882#1 ------------------------AGGAGTGTTCGCCAAAAAACCGTACAAAACTAGCGC 36 ************************************ consensus_4882#0 TTTAGATGATGCCGATCTTGTTGGCAATGTCGAGCGCATCGTAGTCGCGCGTTA-CCGCA 419 consensus_4882#1 TTTAGATGATGCCGATCTTGTTGGCAATGTCGAGCGCATCGTAGTCGCGCGTTAGCCGCA 96 ****************************************************** ***** consensus_4882#0 CGTACGCCTTCTTCTTGCCGTCCGGTCGCACCAGCGTGTTGATCTTCAGCACCTTCACGT 479 consensus_4882#1 CGTACGCCTTCTTCTTGCCGTCCGGTCGCACCAGCGTGTTGATCTTCAGCACCTTCACGT 156 ************************************************************ consensus_4882#0 CGTACAGCTTCCTCACGGCGGCCTTCACGTGGTTCTTGTTGGCGCGCAGGTGAATCAGGA 539 consensus_4882#1 CGTACAGCTTCCTCACGGCGGCCTTCACGTGGTTCTTGTTGGCGCGCAGGTGAATCAGGA 216 ************************************************************ consensus_4882#0 AGACGAGCGTGTTGTTGTCCTCGATCTTCTTCATCGCCGCTTCGGTCGTCAGCGGGTACT 599 consensus_4882#1 AGACGAGCGTGTTGTTGTCCTCGATCTTCTTCATCGCCGCTTCGGTCGTCAGCGGGTACT 276 ************************************************************ consensus_4882#0 TAATTATATTGTACGCATCCATGCGGCTGCGCTTGGCGACCGACTTCCTCGGGTACTTGG 659 consensus_4882#1 TAATTATATTGTACGCATCCATGCGG-TGCGCTTGGCGACCGACTTCCTCGGGTACTTGG 335 ************************** ********************************* consensus_4882#0 GACGACGCGGAAGCTTCAGGGTCTTCGGCCGCTTGAAGTGCACGGACGTCGGGATCTTGC 719 consensus_4882#1 GACGACGCGGAAGCTTCAGGGTCTTCGGCCGCTTGAAGTGCACGGACGTGCGGATCTTGC 395 ************************************************* ********* consensus_4882#0 GGACGCAGGTTCCATACGGACCCTTGACCAGCTTGGTCGAGGCACGCTTGGCACGCAGCA 779 consensus_4882#1 GGACGCAGGTTCCATACGGACCCTTGACCAGCTTGGTCGAGGCACGCTTGGCACGCAGCA 455 ************************************************************ consensus_4882#0 TAGCGGTGGCACGAGCCTTCTGGATGCCCTTCTGGATCTTGGCCTTCACCTGCTCCTTGG 839 consensus_4882#1 TAGCGGTGGCACGAGCCTTCTGGATGCCCTTCTGGATCTTGGCCTTCACCTGCTCCTTGG 515 ************************************************************ consensus_4882#0 TCAGCTTCGGGCGCGGGGACTTGGTCGTCTTCTTGCCCTTGGCATTGATACGGCGCACCG 899 consensus_4882#1 TCAGCTTCGGGCGCGGGGACTTGGTCGTCTTCTTGCCCTTGGCATTGATACGGCGCACCG 575 ************************************************************ consensus_4882#0 GCTTCTTCTTCTCTTTCTTTTCGGCCGGTTGGC--------------------------- 932 consensus_4882#1 GCTTCTTCTTCTCGCCAGCCTTGGCGGGCTTGCCACCGGCACGCTTCTCGGCCTTCTTCT 635 ************* * *** ** * ** consensus_4882#0 ----GGCGGGCTTCT---CAGCGGCCGGCTTCTTCTCGGCAGCGGGCTTCTTCTCAGCTG 985 consensus_4882#1 CCTCGGCGGGCTTCTTCTCAGCGGCCGGCTTCTTCTCGGCAGCGGGCTTCTTCTCAGCTG 695 *********** ****************************************** consensus_4882#0 GTGCAGCCGCTGGCTTCTTCTCAGCAGCTGGCTTCTTC---------------------- 1023 consensus_4882#1 GTGCAGCCGCTGGCTTCTTCTCAGCTGCTGGCTTCTTCTCCCGCCGCGGGCTTCTTTTCC 755 ************************* ************ consensus_4882#0 ------------------------------------------------------------ consensus_4882#1 GCTGCGGGTTTCTTCTCACCAGATCCGGAAGCCGTAGCAGCGGCGGCGGCTGCCGGCTTC 815 consensus_4882#0 ------------------------------------------------------------ consensus_4882#1 TTCTCTTTCTTTTCGGCCGGTTGGCCGGCGGGCTTCTCAGACGGTTTCTTCGGACCCATA 875 consensus_4882#0 - consensus_4882#1 C 876 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||