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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4883#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 856 fasta sequence
[GGTTTTAGTACCCGGTTGTTTTCATTTTCGTGTTCGATTCGATGTATTCTAGTTGTTAGTGAACGACGAGACTCCTCCGTAACTTTGTAACATGTTCCTCCCATACCGTTTAGCATCGGAAATGCGCTCCAGCTACCGCTCAGTTTTTAATTTGTTTGATGTGTTCTAATACTGTTTTGATGAAATCTCTTGTTAGTTGTTTCATATCCTTCCTCAAACCTGGAGGCCTCGGCACGCCTCACCCGCAAGCAGGACAAATCAATTTGTGAAAAGAAAATGTGTCTTATCTATATTATATATTCGTACATCTTTATCACGAGAATAGTCAAAGAAAAGGAAACAAAACCCAGCCTAGCTAGAGAATGTCTACCGACTAATGTAATTGGATCAAAATTTATAGAAAGAGTAGGATTTACAATCGTGTAACAGTGGCCACGGCCTCGAAAACTCTCCATTGTTCGTCTGTGTGTGTGTGTTAGTCTGCCTATAAGAGCATGATGGATGTACGTACGTTTAAAGTGTTTGTTGGACGAAGCAGGAAACTGTCTCTCGCTGTCGTTTAGAACGATCTCTGTTGATCGGTGGCGTGTTTCACCTTCCCTCAAAAAATCAGCCCACCACAACCCATCG-TACCGCGATAGTAACAACCATGTGATGATGTATAGTGAACCCCCTTCCCCCTCTTTGCCTCTATTGAATGTTATCGAATTGAAACTTCCTTTATGTTCACCATTGATGTGTATGTATGTAGGTAACTAGTTTTGCGCACTAGCAAGTAGAGCAAGTCCAAGATCCAAGATCAACGATCGCGAAAGGCAGTTTTAATAGTCGTACNGNCCGTTCTTGTGCAAGCGTG]
[+] EMBL BX610478 [GGTTTTAGTACCCGGTTGTTTTCATTTTCGTGTTCGATTCGATGTATTCTAGTTGTTAGTGAACGACGAGACTCCTCCGTAACTTTGTAACATGTTCCTCCCATACCGTTTAGCATCGGAAATGCGCTCCAGCTACCGCTCAGTTTTTAATTTGTTTGATGTGTTCTAATACTGTTTTGATGAAATCTCTTGTTAGTTGTTTCATATCCTTCCTCAAACCTGGAGGCCTTGGCACGCCTCACCCGCAAGC ]
[+] EMBL BX622625 [ CGATTCGATGTATTCTAGTTGTTAGTGAACGACGAGACTCCTCCGTAACTTTGTAACATGTTCCTCCCATACCGTTTAGCAGCGGAAATGCGCTCCAGCTACCGCTCAGTTTTTAATTTGTTTGATGTGTTCTAATACTGTTTTGATGAAATCTCTTGTTAGTTGTTTCATATCCTTCCTCAAACCTGGAGGCCTCGGCACGCCTCACCCGCAAGCAGGACAAATCAATTTGTGAAAAGAAAATGTGTCTTATCTATATTATATATTCGTACATCTTTATCACGAGAATAGTCAAAGAAAAGGAAACAAAACCCAGCCTAGCTAGAGAATGTCTACCGACTAATGTAATTGGATCAAAATTTATAGAAAGAGTAGGATTTACAATCGTGTAACAGTGGCCACGGCCTCGAAAACTCTCCATTGTTCGTCTGTGTGTGTGTGTTAGTCTGCCTATAAGAGCATGATGGATGTACGTACGTTTAAAGTGTTTGTTGGACGAAGCAGGAAACTGTCTCTCGCTGTCGTTTAGAACGATCTCTGTTGATCGGTGGCGTGTTTCACCTTCCCTCAAAAAATCAGCCCACCACAACCCATCG TACCGCGATAGTAACAACCATGTGATGATGTATAGTGAACCCCCTTCCCCCTCTTTGCCTCTATTGAATGTTATCGAATTGAAACTTCCTTTATGTTCACCATTGATGTGTATGTATGTAGGTAACTAGTTTTGCGCACTAGCAAGTAGAGCAAGTCCAAGATCCAAGATCAACGATCGCGAAAGGCAGTTTTAATAGTCGTACNGNCCGTTCTTGTGCAAGCGTG]
[+] EMBL BX623264 [ CTCCAGCTACCGCTCAGTTTTTAATTTGTTTGATGTGTTCTAATACTGTTTTGATGAAATCTCTTGTTAGTTGTTTCATATCCTTCCTCAAACCTGGAGGCCTCGGCACGCCTCACCCGCAAGCAGGACAAATCAATTTGTGAAAAGAAAATGTGTCTTATCTATATTATATATTCGTACATCTTTATCACGAGAATAGTCAAAGAAAAGGAAACAAAACCCAGCCTAGCTAGAGAATGTCTACCGACTAATGTAATTGGATCAAAATTTATAGAAAGAGTAGGATTTACAATCGTGTAACAGTGGCCACGGCCTCGAAAACTCTCCATTGTTCGTCTGTGTGTGTGTGTTAGTCTGCCTATAAGAGCATGATGGATGTACGTACGTTTAAAGTGTTTGTTGGACGAAGCAGGAAACTGTCTCTCGCTGTCGTTTAGAACGATCTCTGTTGATCGGTGGCGTGTTTCACCTTCCCTCAAAAAATCAGCCCACCACAACCCATCGNTACCGCGATAGTAACAACCATGTGATGATGTATAGTGAACCCCCTTCCCCCTCTTTGCCTCTATTGAATGTTATCGAATTGAAACTTCCTTTATGTTCACCATTGATGTGTATGTATGTAGGTAACT ]
consensusID : consensus_4883#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 671 fasta sequence
[GAGGCAGAATCGGCACGATGGAGACGGTTTTAGTACCCGGTCGTTTTCATTATCTTGTTCGACTTCAGACTGTATTCTAAGTTTAGTTAGATGAACGACGAGACTCCTCCGGTAAACTTATGTANACAGTGATTCCTCCCATACCGTTNACGCAGGCGGAGAATGCGCTCCAGTCTACCGCCTCAGTATCTATTAATTTGTTTGATGTGTTCTAATACTGTGTTTGATGAAATCTCTTGTTAGTTAGTTATCATATCCTTCCTGCGAAACCTGGAGGCCTCGGCACGCCTCACCCGCTAAGCAGGACAAATCAATTATGTAGTAAACAGAACAATGTGTCTCTATCTATATTATATATTCGTACATCTTGTATCACGAGAATAGTCAAAGAACAAGGAAACAANACCCAGACCTANCTNNGAGAATGTCTACCGACTAATGTAATTGGATCAAAATTGATAGAAAGAGTAGGATNTGACACAGTGCGTGTAACAGTGGCCACGGCCTCGAAAACTCTCCATNGTNCGTCTGTGTGTGTGTGTTAGNCTGCCTATAAGAGCATGCATAGGACTCGTACGCTACGCTTGTAAAGTGTCNGATGAGGTACGAAGACTAGGAAACTGTNCATCTCGGNCTTGACGTTNAGAACGATCTCTGTTGATCGGCTGGAC]
[+] EMBL BX469857 [GAGGCAGAATCGGCACGATGGAGACGGTTTTAGTACCCGGTCGTTTTCATTATCTTGTTCGACTTCAGACTGTATTCTAAGTTTAGTTAGATGAACGACGAGACTCCTCCGGTAAACTTATGTANACAGTGATTCCTCCCATACCGTTNACGCAGGCGGAGAATGCGCTCCAGTCTACCGCCTCAGTATCTATTAATTTGTTTGATGTGTTCTAATACTGTGTTTGATGAAATCTCTTGTTAGTTAGTTATCATATCCTTCCTGCGAAACCTGGAGGCCTCGGCACGCCTCACCCGCTAAGCAGGACAAATCAATTATGTAGTAAACAGAACAATGTGTCTCTATCTATATTATATATTCGTACATCTTGTATCACGAGAATAGTCAAAGAACAAGGAAACAANACCCAGACCTANCTNNGAGAATGTCTACCGACTAATGTAATTGGATCAAAATTGATAGAAAGAGTAGGATNTGACACAGTGCGTGTAACAGTGGCCACGGCCTCGAAAACTCTCCATNGTNCGTCTGTGTGTGTGTGTTAGNCTGCCTATAAGAGCATGCATAGGACTCGTACGCTACGCTTGTAAAGTGTCNGATGAGGTACGAAGACTAGGAAACTGTNCATCTCGGNCTTGACGTTNAGAACGATCTCTGTTGATCGGCTGGAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4883#0 -------------------------GGTTTTAGTACCCGGTTGTTTTCATTTTCGTGTTC 35
consensus_4883#1 GAGGCAGAATCGGCACGATGGAGACGGTTTTAGTACCCGGTCGTTTTCATTATCTTGTTC 60
**************** ********* ** *****
consensus_4883#0 GATTCGA---TGTATTCTAGTT---GTTAG-TGAACGACGAGACTCCTCCG-TAACTTTG 87
consensus_4883#1 GACTTCAGACTGTATTCTAAGTTTAGTTAGATGAACGACGAGACTCCTCCGGTAAACTTA 120
** * * ********* * ***** ******************** *** **
consensus_4883#0 TA-ACATG----TTCCTCCCATACCGTTTA-GCA--TCGGAAATGCGCTCCAG-CTACCG 138
consensus_4883#1 TGTANACAGTGATTCCTCCCATACCGTTNACGCAGGCGGAGAATGCGCTCCAGTCTACCG 180
* * * **************** * *** * ************ ******
consensus_4883#0 C-TCAGTTT---TTAATTTGTTTGATGTGTTCTAATACTGT-TTTGATGAAATCTCTTGT 193
consensus_4883#1 CCTCAGTATCTATTAATTTGTTTGATGTGTTCTAATACTGTGTTTGATGAAATCTCTTGT 240
* ***** * ***************************** ******************
consensus_4883#0 TAGTTGTTT--CATATCCTTCCTC--AAACCTGGAGGCCTCGGCACGCCTCACCCGC-AA 248
consensus_4883#1 TAGTTAGTTATCATATCCTTCCTGCGAAACCTGGAGGCCTCGGCACGCCTCACCCGCTAA 300
***** ** ************ ******************************* **
consensus_4883#0 GCAGGACAAATCAATTT----GTGAAAAGAA-AATGTGTCT-TATCTATATTATATATTC 302
consensus_4883#1 GCAGGACAAATCAATTATGTAGTAAACAGAACAATGTGTCTCTATCTATATTATATATTC 360
**************** ** ** **** ********* ******************
consensus_4883#0 GTACATCTT-TATCACGAGAATAGTCAAAGAA-AAGGAAACAAAACCCAG-CCTAGCTAG 359
consensus_4883#1 GTACATCTTGTATCACGAGAATAGTCAAAGAACAAGGAAACAANACCCAGACCTANCTNN 420
********* ********************** ********** ****** **** **
consensus_4883#0 -AGAATGTCTACCGACTAATGTAATTGGATCAAAATTTATAGAAAGAGTAGGATTT---A 415
consensus_4883#1 GAGAATGTCTACCGACTAATGTAATTGGATCAAAATTGATAGAAAGAGTAGGATNTGACA 480
************************************ **************** * *
consensus_4883#0 CAAT-CGTGTAACAGTGGCCACGGCCTCGAAAACTCTCCATTGTTCGTCTGTGTGTGTGT 474
consensus_4883#1 CAGTGCGTGTAACAGTGGCCACGGCCTCGAAAACTCTCCATNGTNCGTCTGTGTGTGTGT 540
** * ************************************ ** ***************
consensus_4883#0 GTTAGTCTGCCTATAAGAGCATG-ATGGA---TGTACG-TACGTTT--AAAGTGTTTGTT 527
consensus_4883#1 GTTAGNCTGCCTATAAGAGCATGCATAGGACTCGTACGCTACGCTTGTAAAGTGTCNGAT 600
***** ***************** ** * ***** **** ** ******* * *
consensus_4883#0 GG---ACGAAG--CAGGAAACTGTC--TCTCG---CTGTCGTTTAGAACGATCTCTGTTG 577
consensus_4883#1 GAGGTACGAAGACTAGGAAACTGTNCATCTCGGNCTTGACGTTNAGAACGATCTCTGTTG 660
* ****** ********** ***** ** **** ****************
consensus_4883#0 ATCGGTGGCGTGTTTCACCTTCCCTCAAAAAATCAGCCCACCACAACCCATCGTACCGCG 637
consensus_4883#1 ATCGGCTGGAC------------------------------------------------- 671
***** *
consensus_4883#0 ATAGTAACAACCATGTGATGATGTATAGTGAACCCCCTTCCCCCTCTTTGCCTCTATTGA 697
consensus_4883#1 ------------------------------------------------------------
consensus_4883#0 ATGTTATCGAATTGAAACTTCCTTTATGTTCACCATTGATGTGTATGTATGTAGGTAACT 757
consensus_4883#1 ------------------------------------------------------------
consensus_4883#0 AGTTTTGCGCACTAGCAAGTAGAGCAAGTCCAAGATCCAAGATCAACGATCGCGAAAGGC 817
consensus_4883#1 ------------------------------------------------------------
consensus_4883#0 AGTTTTAATAGTCGTACNGNCCGTTCTTGTGCAAGCGTG 856
consensus_4883#1 ---------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||