These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4887#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 654 fasta sequence [GGTGCGTACCCTACCCAAAACCCCTGAATGGAGCTGTACTACAACATTGTGTCGCCGCCGTGCCAGAGCGTGCTGCTCGTGGGCAAAAAACTGGGCATCACGTTCGACCTAAAGGAAGTGAATCCTCATCTCCCGGAAGTGCGCGAACAGTTGCGGAAGTTCAATCCCCAACACACCATACCGACGTTCATTGAGGATGGACACGTCATTTGGGAGTCGTACGCGATCGCCATCTATCTGGTGGAGAAGTACGGCAATGGTGACGATTCGCTCTACCCGCGTGATCCGAAGGTACGGTCCGTCGTGAACCAACGGCTGTTCTTCGACAATGGTCTAATGTTCAAGAGTGCCATCGAATACGTGGAGTGTATTTTGAAGAAAAAGCTCGAACCAACGGAAGAAATGCAGCAGCGGCTGAAGAAAGCGCTTGGATTGTTGGAGTCGTTCGTGAAGGAGCGAGCGTTCGTCGCCAGCGATCATCTAACGATCGCCGATATCTGTCTGCTGAGCAGTGTGACACTGCTAACCGGCATCAAGTACGATCTGGCCACCTTCCCGGGCATTACGGNCTGGGTCGCTCGTGTTACCGGTGAGCTTTCCGGACTACNGCGAGTTCCACAAGGAGCTGTACGAGAAGAGCATGGAGTACATTAA] [+] EMBL BX625131 [GGTGCGTACCCTACCCAAAACCCCTGAATGGAGCTGTACTACAACATTGTGTCGCCGCCGTGCCAGAGCGTGCTGCTCGTGGGCAAAAAACTGGGCATCACGTTCGACCTAAAGGAAGTGAATCCTCATCTCCCGGAAGTGCGCGAACAGTTGCGGAAGTTCAATCCCCAACACACCATACCGACGTTCATTGAGGATGGACACGTCATTTGGGAGTCGTACGCGATCGCCATCTATCTGGTGGAGAAGTACGGCAATGGTGACGATTCGCTCTACCCGCGTGATCCGAAGGTACGGTCCGTCGTGAACCAACGGCTGTTCTTCGACAATGGTCTAATGTTCAAGAGTGCCATCGAATACGTGGAGTGTATTTTGAAGAAAAAGCTCGAACCAACGGAAGAAATGCAGCAGCGGCTGAAGAAAGCGCTTGGATTGTTGGAGTCGTTCGTGAAGGAGCGAGCGTTCGTCGCCAGCGATCATCTAACGATCGCCGATATCTGTCTGCTGAGCAGTGTGACACTGCTAACCGGCATCAAGTACGATCTGGCCACCTTCCCGGGCATTACGGNCTGGGTCGCTCGTGTTACCGGTGAGCTTTCCGGACTACNGCGAGTTCCACAAGGAGCTGTACGAGAAGAGCATG ] [+] EMBL AF515527 [ TACTACAACATTGTGTCGCCGCCGTGCCAGAGCGTGCTGCTCGTGGGCAAAAAGCTGGGCATCACGTTCGACCTAAAGGAAGTGAATCCTCATCTCCCGGAAGTGCGCGAACAGTTGCGGAAGTTCAATCCCCAACACACCATCCCGACGTTCATTGAGGATGGACACGTCATTTGGGAGTCGTACGCGATCGCCATCTATCTGGTGGAGAAGTACGGCAATGGCGACGATGCGCTCTACCCGCGTGGTCCGAAGGTTCGGTCCGTCGTGAACCAACGGCTGTTCTTCGACAATGGCCTTATGTTCAAGAGTGCCATCGAGTACGTGGAGTGTATTTTGAAGAAAAAGCTCGAACCAACGGAAGAAATGCAGCAGCGGCTGAAGAAAGCGCTTGGATTGTTGGAGTCGTTCGTGAAGGAGCGAGCGTTCGTCGCCAGCGATCATCTAACGATCGCCGATATCTGTCTGCTGAGCAGTGTGACGCTGCTAACCGGCATCAAGTACGATCTGGCCGCCTTCCCGGGCATTACGGCCTGGGTCGCTCGTGTTACCGGTGAGC TTCCGGACTACGGCGAGTTCCACAAGGAGCTGTACGAGAAGAGCATGGAGTACATTAA] consensusID : consensus_4887#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 634 fasta sequence [ATGGAGCTGTACTACAACATTGTGTCGCCGCCGTGCCAGAGCGTGCTGCTCGTGGGCAAAAAGCTGGGCATCACGTTCGACCTGAAGGAAGTGAATCCTCATCTCCCGGAAGTGCGCGAACAGTTGCGGAAGGTTAGTGGGGCAACGGAAACGGGGAACGCCGAACGAATGTGCGCTTCATTAAGCTTCAATTAATCATTGGCCGCTCTGTGTTACCGCCCTTTAGTTCAATCCCCAACACACCATACCGACGTTCATTGAGGATGGACACGTCATTTGGGAGTCGTACGCGATCGCCATCTATCTGGTGGAGAAGTACGGCAATGGCGACGATGCGCTCTACCCGCGCGATCCGAAGGTACGGTCCGTCGTGAACCAACGGCTGTTCTTCGACAATGGCCTTATGTTCAAGAGTGCCATCGAGTACGTGGAGTGTATTTTGAAGAAAAAGCTCGAACCAACGGAAGAAATGCAGCAGCGGCTGAAGAAAGCGCTTGGATTGTTGGAGTCGTTCGTGAAGGAGCGAGCGTTCGTCGCCAGCGATCATCTAACGATCGCCGATATCTGTCTGCTGAGCAGTGTGACACTGCTAACCGGCATCAAGTACGATCTGGGCCACCTTCCCCGGGCATTA] [+] EMBL BX620189 [ATGGAGCTGTACTACAACATTGTGTCGCCGCCGTGCCAGAGCGTGCTGCTCGTGGGCAAAAAGCTGGGCATCACGTTCGACCTGAAGGAAGTGAATCCTCATCTCCCGGAAGTGCGCGAACAGTTGCGGAAGGTTAGTGGGGCAACGGAAACGGGGAACGCCGAACGAATGTGCGCTTCATTAAGCTTCAATTAATCATTGGCCGCTCTGTGTTACCGCCCTTTAGTTCAATCCCCAACACACCATACCGACGTTCATTGAGGATGGACACGTCATTTGGGAGTCGTACGCGATCGCCATCTATCTGGTGGAGAAGTACGGCAATGGCGACGATGCGCTCTACCCGCGCGATCCGAAGGTACGGTCCGTCGTGAACCAACGGCTGTTCTTCGACAATGGCCTTATGTTCAAGAGTGCCATCGAGTACGTGGAGTGTATTTTGAAGAAAAAGCTCGAACCAACGGAAGAAATGCAGCAGCGGCTGAAGAAAGCGCTTGGATTGTTGGAGTCGTTCGTGAAGGAGCGAGCGTTCGTCGCCAGCGATCATCTAACGATCGCCGATATCTGTCTGCTGAGCAGTGTGACACTGCTAACCGGCATCAAGTACGATCTGGGCCACCTTCCCCGGGCATTA] [+] EMBL BX613169 [ GTGGAGGGTATTTTGAAGAAAAAGCTCGAACCAACGGAAGAAATGCAGCAGCGGCCGAAGAAAGCGCGTGGATTGTTGGAGTCGTTCGTGAAGGAGCGAGCGTTCGTCGCCAGCGATCATC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4887#0 GGTGCGTACCCTACCCAAAACCCCTGAATGGAGCTGTACTACAACATTGTGTCGCCGCCG 60 consensus_4887#1 ---------------------------ATGGAGCTGTACTACAACATTGTGTCGCCGCCG 33 ********************************* consensus_4887#0 TGCCAGAGCGTGCTGCTCGTGGGCAAAAAACTGGGCATCACGTTCGACCTAAAGGAAGTG 120 consensus_4887#1 TGCCAGAGCGTGCTGCTCGTGGGCAAAAAGCTGGGCATCACGTTCGACCTGAAGGAAGTG 93 ***************************** ******************** ********* consensus_4887#0 AATCCTCATCTCCCGGAAGTGCGCGAACAGTTGCGGAAG--------------------- 159 consensus_4887#1 AATCCTCATCTCCCGGAAGTGCGCGAACAGTTGCGGAAGGTTAGTGGGGCAACGGAAACG 153 *************************************** consensus_4887#0 ------------------------------------------------------------ consensus_4887#1 GGGAACGCCGAACGAATGTGCGCTTCATTAAGCTTCAATTAATCATTGGCCGCTCTGTGT 213 consensus_4887#0 -------------TTCAATCCCCAACACACCATACCGACGTTCATTGAGGATGGACACGT 206 consensus_4887#1 TACCGCCCTTTAGTTCAATCCCCAACACACCATACCGACGTTCATTGAGGATGGACACGT 273 *********************************************** consensus_4887#0 CATTTGGGAGTCGTACGCGATCGCCATCTATCTGGTGGAGAAGTACGGCAATGGTGACGA 266 consensus_4887#1 CATTTGGGAGTCGTACGCGATCGCCATCTATCTGGTGGAGAAGTACGGCAATGGCGACGA 333 ****************************************************** ***** consensus_4887#0 TTCGCTCTACCCGCGTGATCCGAAGGTACGGTCCGTCGTGAACCAACGGCTGTTCTTCGA 326 consensus_4887#1 TGCGCTCTACCCGCGCGATCCGAAGGTACGGTCCGTCGTGAACCAACGGCTGTTCTTCGA 393 * ************* ******************************************** consensus_4887#0 CAATGGTCTAATGTTCAAGAGTGCCATCGAATACGTGGAGTGTATTTTGAAGAAAAAGCT 386 consensus_4887#1 CAATGGCCTTATGTTCAAGAGTGCCATCGAGTACGTGGAGTGTATTTTGAAGAAAAAGCT 453 ****** ** ******************** ***************************** consensus_4887#0 CGAACCAACGGAAGAAATGCAGCAGCGGCTGAAGAAAGCGCTTGGATTGTTGGAGTCGTT 446 consensus_4887#1 CGAACCAACGGAAGAAATGCAGCAGCGGCTGAAGAAAGCGCTTGGATTGTTGGAGTCGTT 513 ************************************************************ consensus_4887#0 CGTGAAGGAGCGAGCGTTCGTCGCCAGCGATCATCTAACGATCGCCGATATCTGTCTGCT 506 consensus_4887#1 CGTGAAGGAGCGAGCGTTCGTCGCCAGCGATCATCTAACGATCGCCGATATCTGTCTGCT 573 ************************************************************ consensus_4887#0 GAGCAGTGTGACACTGCTAACCGGCATCAAGTACGATCTGG-CCACCTTCCC-GGGCATT 564 consensus_4887#1 GAGCAGTGTGACACTGCTAACCGGCATCAAGTACGATCTGGGCCACCTTCCCCGGGCATT 633 ***************************************** ********** ******* consensus_4887#0 ACGGNCTGGGTCGCTCGTGTTACCGGTGAGCTTTCCGGACTACNGCGAGTTCCACAAGGA 624 consensus_4887#1 A----------------------------------------------------------- 634 * consensus_4887#0 GCTGTACGAGAAGAGCATGGAGTACATTAA 654 consensus_4887#1 ------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||