These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4890#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 374 fasta sequence [AATGCTGTCTACTACCGGCAGTATGTGGCTTAAAGGAGGAACTTTTAGGTAGGCCTGTTGGTTGGTTTCGATGCGTAAGACATACATGTAATCATCTCCCTTTTAGTAATGCTGTCTAGAATCCGGTACGCTGCTCGAATCTCGCCCGCGGTCCACGGCACTGCACACGAGCGTTTGCTATTTGGACGTGCTTTTATCGTGTATCGTGCATGATATCGATATTTATCCGTTTATCTTATTCAATCTAATCGAACCGTGTCGGTAAAGGGAGCAGTGTGAAGGGAGGAGTCGAATANCGTACACCTTTNATGCGCTANTGTACGGAAGCGTAGTAGAGANATAANCCTTCTANCNNACNTATNCNAAAAAAAAAA] [+] EMBL CF541657 [AATGCTGTCTACTACCGGCAGTATGTGGCTTAAAGGAGGAACTTTTAGGTAGGCCTGTTGGTTGGTTTCGATGCGTAAGACATACATGTAATCATCTCCCTTTTAGTAATGCTGTCTAGAATCCGGTACGCTGCTCGAATCTCGCCCGCGGTCCACGGCACTGCACACGAGCGTTTGCTATTTGGACGTGCTTTTATCGTGTATCGTGCATGATATCGATATTTATCCGTTTATCTTATTCAATCTAATCGAACCGTGTCGGTAAAGGGAGCAGTGTGAAGGGAGGAGTCGAATANCGTACACCTTTNATGCGCTANTGTACGGAAGCGTAGTAGAGANATAANCCTTCTANCNNACNTATNCNAAAAAAAAAA] [-] EMBL AGA282770 [ ATGCTGTCTACTACCGGCAGTATGTGGCTTAAAGGAGGAACTTTTAGGTAGGCCTGTTGGTTGGTTTCGATGCGTAAGACATACATGTAATCATCT CCTTTTAGTAATGCAGTCTAGATTCCGGTACGCTGCTCGAATCTCGCCCGCGGTCCACGGCACTGCACACGAGCGTTTGCTATTGGGACGTGCTTTTATCGTGTATCGTGCATGATATCGATATTTATCCGTTTATCTTATTCAATCTAATCGAACCGTGTCGGTAAAGGGAGCAttct ] [-] EMBL CNS09DH9 [ ATGCTGTCTACTACCGGCAGTATGTGGCTTAAAGGAGGAACTTTTAGGTAGGCCTGTTGGTTGGTTTCGATGCG ] consensusID : consensus_4890#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 135 fasta sequence [CCGCCCACGCGTCCGAATCGAACCGTGTCGGTAAAGGGAGCAGTGTGAAGGGAGGAGTCGAATAACGTACACCTTTTATGCGCTAATGTACGGAAGCGTAGTAGAGAAATAAACCTTCCTACCTTACCTTATCTT] [+] EMBL BM586806 [CCGCCCACGCGTCCGAATCGAACCGTGTCGGTAAAGGGAGCAGTGTGAAGGGAGGAGTCGAATAACGTACACCTTTTATGCGCTAATGTACGGAAGCGTAGTAGAGAAATAAACCTTCCTACCTTACCTTATCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4890#0 AATGCTGTCTACTACCGGCAGTATGTGGCTTAAAGGAGGAACTTTTAGGTAGGCCTGTTG 60 consensus_4890#1 ------------------------------------------------------------ consensus_4890#0 GTTGGTTTCGATGCGTAAGACATACATGTAATCATCTCCCTTTTAGTAATGCTGTCTAGA 120 consensus_4890#1 ------------------------------------------------------------ consensus_4890#0 ATCCGGTACGCTGCTCGAATCTCGCCCGCGGTCCACGGCACTGCACACGAGCGTTTGCTA 180 consensus_4890#1 ------------------------------------------------------------ consensus_4890#0 TTTGGACGTGCTTTTATCGTGTATCGTGCATGATATCGATATTTATCCGTTTATCTTATT 240 consensus_4890#1 ---------------------------------------------------CCGCCCACG 9 * * consensus_4890#0 CAATCTAATCGAACCGTGTCGGTAAAGGGAGCAGTGTGAAGGGAGGAGTCGAATANCGTA 300 consensus_4890#1 CGTCCGAATCGAACCGTGTCGGTAAAGGGAGCAGTGTGAAGGGAGGAGTCGAATAACGTA 69 * * ************************************************* **** consensus_4890#0 CACCTTTNATGCGCTANTGTACGGAAGCGTAGTAGAGANATAANCCTTC-TANCNNACNT 359 consensus_4890#1 CACCTTTTATGCGCTAATGTACGGAAGCGTAGTAGAGAAATAAACCTTCCTACCTTACCT 129 ******* ******** ********************* **** ***** ** * ** * consensus_4890#0 ATNCNAAAAAAAAAA 374 consensus_4890#1 TATCTT--------- 135 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||