These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4891#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1107 fasta sequence [CCCGCGGTTATTTTTTTTTTTTTCCGGTTNTTCAAATCCAATTGGTTTTGTTTCCAGTGTTTATTTTTCACACGACAACCAAGGGGTGACCTCTGTACAGAGATCGCCTTGGAGACTCCCGCGCTTGACGGGGGAAGTAGTATCGCCTACAATGTTCAGTTCCATACGCGGCCTTCTGCGCTATTAAAACCCTAACTTATTGTGATTACACCTCATATTNTGCTCGCTTCCCTATGCGTACATTATCACNGGTAATTCTTACAATTTAACAGAACAAGGGCGACACACCGTTCGTCCTACCCTCTCTATGTCTAGTCTGTCTGTACCGTCTGACCCATCCGCGATGGNNTAGCGTTNGGTAAATGTGTAATTCCGAANTAGGGACGGGGACTACCTAANTTGTNGTAACNCGGAAATATCATAGTAATTTTATTACNCCACTATATCNAGTACAACACAGGACAAAAATTGGTTTGGCCAATAGANNAACNGGGACAAGCGGCNAAAAGGGGCACATAGGCGTTANTAAAGGGAATAACTCNCACCTTTGTCGCTAAACTAACAAAATTGGCGTATCTACCCTNCTTAAATACCNTATAACTACCAAGACCAGANNCATACTANCTAGGACACNNGATNAGGATGGGNTCCCCGCNACACTAGGTNCGGCCAACCGGTAAAAAGGNACAAGAACAATAGCATCCTTAAAGCCNACGGAGCGATCANGGACTANAACNANGGACTCACACAACAGCCCTACATCGNAACCCGNNGGCCANAAAGGCATAACAANGGNCGAACCGACCAAACCCACCNNAACTACCCCAAANCAANCCCTACCCGCGGGTCANACCAACGCNACACACCAGGGACGAGNCNAGNAANAGGGAAGNANCCACNGGCAACAGCAAGANGGANGGCAAAACAAAGCANGCAAGGACGCACANCCCATCGGAGGCACAGGAAAANAAACAACGAAGCTGCGNAAAACATAACCNCAGGCAACTGCCAANCCAGCCCACGACGAGGAGCANGAACGAGCGGGACANAGAAATCCAGACANGGCCGGCCNGACATCAACACGCAAANACNCGGGGCCACCGGGGN] [+] EMBL AL695276 [CCCGCGGTTATTTTTTTTTTTTTCCGGTTNTTCAAATCCAATTGGTTTTGTTTCCAGTGTTTATTTTTCACACGACAACCAAGGGGTGACCTCTGTACAGAGATCGCCTTGGAGACTCCCGCGCTTGACGGGGGAAGTAGTATCGCCTACAATGTTCAGTTCCATACGCGGCCTTCTGCGCTATTAAAACCCTAACTTATTGTGATTACACCTCATATTNTGCTCGCTTCCCTATGCGTACATTATCACNGGTAATTCTTACAATTTAACAGAACAAGGGCGACACACCGTTCGTCCTACCCTCTCTATGTCTAGTCTGTCTGTACCGTCTGACCCATCCGCGATGGNNTAGCGTTNGGTAAATGTGTAATTCCGAANTAGGGACGGGGACTACCTAANTTGTNGTAACNCGGAAATATCATAGTAATTTTATTACNCCACTATATCNAGTACAACACAGGACAAAAATTGGTTTGGCCAATAGANNAACNGGGACAAGCGGCNAAAAGGGGCACATAGGCGTTANTAAAGGGAATAACTCNCACCTTTGTCGCTAAACTAACAAAATTGGCGTATCTACCCTNCTTAAATACCNTATAACTACCAAGACCAGANNCATACTANCTAGGACACNNGATNAGGATGGGNTCCCCGCNACACTAGGTNCGGCCAACCGGTAAAAAGGNACAAGAACAATAGCATCCTTAAAGCCNACGGAGCGATCANGGACTANAACNANGGACTCACACAACAGCCCTACATCGNAACCCGNNGGCCANAAAGGCATAACAANGGNCGAACCGACCAAACCCACCNNAACTACCCCAAANCAANCCCTACCCGCGGGTCANACCAACGCNACACACCAGGGACGAGNCNAGNAANAGGGAAGNANCCACNGGCAACAGCAAGANGGANGGCAAAACAAAGCANGCAAGGACGCACANCCCATCGGAGGCACAGGAAAANAAACAACGAAGCTGCGNAAAACATAACCNCAGGCAACTGCCAANCCAGCCCACGACGAGGAGCANGAACGAGCGGGACANAGAAATCCAGACANGGCCGGCCNGACATCAACACGCAAANACNCGGGGCCACCGGGGN] consensusID : consensus_4891#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 870 fasta sequence [TTTTTTTTTTCCTCCGTTTTTCAAATCAATTGGTTTTGTTTCCAGTGTTTATTTTTCACACGACAACCAAGGGGTGACCTCTGTACAGAGATCGCCTTGGAGACTCCCGCGCTTGACGGGGGAAGTAGTATCGCCTACAATGTTCAGTTCCATACGCGGCCTTCTGCGCTATTAAAACCCTAACTTTTGTGATTCACCTCATATTGCTCGCTTCCCTTGCGTCATTTCACGGTAATTCTTACAATTTAAAGAAAAGGGCACCACCGTCGTCCTCCCTCTTTGTCTGTCTGTCCGTCCGTCTGACCCATCGCGATGATGGTGTAGTGGTATTCGATGGCGGGACTCTATGTGTACGGAATTCATGTATTTCTTCCCCTTTTGTTTTTGCAAATGGTTGCGATGTTCGGCAGGGAAAGGGAATGGTTTTTTGGTTCTCCTGCGCTAATAAATGCGTTCTCTCCATCTTCTCAGCCGCTTCGCTGTTTGTTGTGGTTCGTTTTGTTGCACGTTTTTGTCGTCATGCT-TAGCAGGCGTTGCTTACTGCTATAACCTTTGTTCGTGGAAAGGATTTTGTTCCCCACCCTTTCCATAGCTCCGGTTTCAACAAACGGCAAGAAGAGAGCAAAAGAGAGAGAGAGAGAGACACTGTTGAGACTCACAGAGTGCTTTACTTCTCGCTGCTACCGCCGCGGGCGATTTTGCGCAACATTCGATTGCCGCAGATGAACGTGAACAGGGCCAGCGGGATCAGGTAGCGGATCGTGTCGAACATGTTCAACCGCAGCCAGAAGATGCCAAACAGCACCAGGATAGCACCGAGCCCGAGATGGAACCCGATCGCACCGAGCGACAGCGGGAAGTTCTTCACGG] [-] EMBL CF541682 [TTTTTTTTTTCCTCCGTTTTTCAAATCAATTGGTTTTGTTTCCAGTGTTTATTTTTCACACGACAACCAAGGGGTGACCTCTGTACAGAGATCGCCTTGGAGACTCCCGCGCTTGACGGGGGAAGTAGTATCGCCTACAATGTTCAGTTCCATACGCGGCCTTCTGCGCTATTAAAACCCTAACTTTTGTGATTCACCTCATATTGCTCGCTTCCCTTGCGTCATTTCACGGTAATTCTTACAATTTAAAGAAAAGGGCACCACCGTCGTCCTCCCTCTTTGTCTGTCTGTCTGTCCGTCTGACCCATCGCGATGATGGTGTAGTGGTATTCGATGGCGGGACTCTATGTGTACGGAATTCATGTATTTCTTCCCCTTTTGTTTTTGCAAATGGTTGCGATGTTCGGCAGGGAAAGGGAATGGTTTTTTGGTTCTCCTGCGCTAATAAATGCGTTCTCTCTATCTTCTCAGCCGCTTCtc ] [-] EMBL BM603540 [ CCTCTTTGTCTGTCTGTCCGTCCGTCTGACCCATCGCGATGATGGTGTAGTGGTATTCGATGGCGGGACTCTATGTGTACGGAATTCATGTATTTCTTCCCCTTTTGTTTTTGCAAATGGTTGCGATGTTCGGCAGGGAAAGGGAATGGTTTTTTGGTTCTCCTGCGCTAATAAATGCGTTCTCTCCATCTTCTCAGCCGCTTCGCTGTTTGTTGTGGTTCGTTTTGTTGCACGTTTTTGTCGTCATGCT TAGCAGGCGTTGCTTACTGCTATAACCTTTGTTCGTGGAAAGGATTTTGTTCCCCACCCTTTCCATAGCTCCGGTTTCAACAAACGGCAAGAAGAGAGCAAAAGAGAGAGAGAGAGAGACACTGTTGAGACTCACAGAGTGCTTTACTTCTCGCTGCTACCGCCGCGGGCGATTTTGCGCAACATTCGATTGCCGCAGATGAACGTGAACAGGGCCAGCGGGATCAGGTAGCGGATCGTGTCGAACATGTTCAACCGCAGCCAGAAGATGCCAAACAGCACCAGGATAGCACCGAGCCCGAGATGGAACCCGATCGCACCGAGCGACAGCGGGAAGTTCTTCACGG] [-] EMBL CF541784 [ tTGTNTGTCCGTGCGTCTGACCCATCGCGGTGATGGTGTGGTGGTATTCGATGGCGGGACTCTATGTGTACGGAATTCATGTATTTCTTCCCCTTTTGTTTTTGCAAATGGTTGCGATGTTCGGCAGGGAAAGGGAATGGTTTTTTGGTTCTCCTGCGCTAATAAATGCGTTCTCTCCATCTTCTCAGTCGCTTCGCTGTTTGTTGTGGTTCGTTTTGTTGCACGTTTTTGTCGTCATGCTCTAGCAGGCGTTGCTTACTGCTAAAACCTTTGTTCGTGGAAAGGATTTTGTTCCCCACCCTTTCCATAGCTCCGGTTTCAACAAACGGCGAG AG GAG AAAGAG G GAGAGAGAGACACTGTTGAGACTCACAGAGTGCTTTACTTCTCGCTGCTACCGCCGCGGGCGATTTTGCGCAACATTCGATTGCCGCAGATGAACGTAAACAGGGCCAGCGGGATCAGGTAGCGGATCGTGTCGAACATGTTCA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4891#0 CCCGCGGTTATTTTTTTTTTTTTCCGGTTNTTCAAATCCAATTGGTTTTGTTTCCAGTGT 60 consensus_4891#1 -----------TTTTTTTTTTCCTCCGTTTTTCAAATC-AATTGGTTTTGTTTCCAGTGT 48 ********** * *** ******** ********************* consensus_4891#0 TTATTTTTCACACGACAACCAAGGGGTGACCTCTGTACAGAGATCGCCTTGGAGACTCCC 120 consensus_4891#1 TTATTTTTCACACGACAACCAAGGGGTGACCTCTGTACAGAGATCGCCTTGGAGACTCCC 108 ************************************************************ consensus_4891#0 GCGCTTGACGGGGGAAGTAGTATCGCCTACAATGTTCAGTTCCATACGCGGCCTTCTGCG 180 consensus_4891#1 GCGCTTGACGGGGGAAGTAGTATCGCCTACAATGTTCAGTTCCATACGCGGCCTTCTGCG 168 ************************************************************ consensus_4891#0 CTATTAAAACCCTAACTTATTGTGATTACACCTCATATTNTGCTCGCTTCCCTATGCGTA 240 consensus_4891#1 CTATTAAAACCCTAACTT-TTGTGATT-CACCTCATATT--GCTCGCTTCCCT-TGCGT- 222 ****************** ******** *********** ************ ***** consensus_4891#0 CATTATCACNGGTAATTCTTACAATTTAACAGAACAAGGGCGACACACCGTTCGTCCTAC 300 consensus_4891#1 CATT-TCACGG-TAATTCTTACAATTTAA-AGAA-AAGGGCACCAC------CGTCGTCC 272 **** **** * ***************** **** ****** *** **** * * consensus_4891#0 CCTCTCTATGTCTAGTCTGTCTGTACCGTCTGACCCATCC--GCGATGGNNTAGCGTTNG 358 consensus_4891#1 TCCCTCTTTGTCT-GTCTGTCCGT-CCGTCTGACCCATCGCGATGATGGTGTAGTGGTAT 330 * **** ***** ******* ** ************** ***** *** * * consensus_4891#0 GTAAATGTGTAATTCCGAANTAGGGACGGGGACTACCTAANTTGTNGTAACNCGGAAATA 418 consensus_4891#1 TCGATGGCGGGACTCT---ATGTGTACGGAATTCATGTATTTCTTCCCCTTTTGTT--TT 385 * * * * ** * * **** * ** * * * * consensus_4891#0 TCATAGTAATTTTATTACNCCACTATATCNAGTACAACACAGGACAAAAATTGGTTTG-G 477 consensus_4891#1 TGCAAATGGTTGCGATGTTCGGCAG----GGAAAGGGAATGGTTTTTTGGTTCTCCTGCG 441 * * * ** * * * * * * ** ** * consensus_4891#0 CCAATAGANNAACNGGGACAAGCGGCNAAAAGGGGCACATAGGCGTTANTAAAGGGAATA 537 consensus_4891#1 CTAATAAATGCGTTCTCTCCATCTTCTCAGCCGCTTCGCTGTTTGTTGTGGTTCGTTTTG 501 * **** * * * * * * * * *** * * consensus_4891#0 ACTCNCACCTTTGTCGCTAAACTAACAAAATTGGCGTATCTACCCTNCTTAAATACCNTA 597 consensus_4891#1 TTGCACGTTTTTGTCGTCATGCT--------TAGCAGGCGTTGCTTACTGCTATAACCTT 553 * * ******* * ** * ** * * * ** *** * * consensus_4891#0 TAACTACCAAGACCAGANNCATACTANCTAGGACACNNGATNAGGATGGGNTCCCCGCNA 657 consensus_4891#1 TGTTCGTGGAAA---GGATTTTGTTCCC-----CACCCTTTCCATA----GCTCCGGTTT 601 * * * * * * * *** * * ** * consensus_4891#0 CACTAGGTNCGGCCAACCGGTAAAAAGGNACAAGAACAATAGCATCCTTAAAGCCNACGG 717 consensus_4891#1 CAACAAACGGCAAGAAGAGAGCAAAAGAGAGAGAGAGAGAGACACTGTTGAGACTCACAG 661 ** * ** * ***** * * * * ** ** * * ** * consensus_4891#0 AGCGATCANGGACT-ANAACNANGGACTCACACAACA--GCCCTACATCGNAACCCGNNG 774 consensus_4891#1 AGTGCTTTACTTCTCGCTGCTACCGCCGCGGGCGATTTTGCGCAACATTCGATTGCCGCA 721 ** * * ** * * * * * * * ** * **** * * consensus_4891#0 GCCANAAAGGCATAACAANGGNCGAACCGACCAAACCCACCNNAACTACCCCAAANCAAN 834 consensus_4891#1 GATGAACGTGAACAGGGCCAGCGGGATCAGGTAG-CGGATCGTGTCGAA--CATGTTCAA 778 * * * * * * * * * * * * * * * ** * consensus_4891#0 CCCTACCCGCGGGTCANACCAACGCNACACACCAGGGACGAGNCNAGNAANAGGGAAGNA 894 consensus_4891#1 CCGCAGCCAGAAGATGCCAAACAGCACCAGGATAGCACCGAGCCCGAGATGGAACCCGAT 838 ** * ** * * ** ** ** **** * * * consensus_4891#0 NCCACNG-GCAACAGCAAGANGGANGGCAAAACAAAGCANGCAAGGACGCACANCCCATC 953 consensus_4891#1 CGCACCGAGCGACAGCGGGAAGTTCTTCACGG---------------------------- 870 *** * ** ***** ** * ** consensus_4891#0 GGAGGCACAGGAAAANAAACAACGAAGCTGCGNAAAACATAACCNCAGGCAACTGCCAAN 1013 consensus_4891#1 ------------------------------------------------------------ consensus_4891#0 CCAGCCCACGACGAGGAGCANGAACGAGCGGGACANAGAAATCCAGACANGGCCGGCCNG 1073 consensus_4891#1 ------------------------------------------------------------ consensus_4891#0 ACATCAACACGCAAANACNCGGGGCCACCGGGGN 1107 consensus_4891#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||