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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4894#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1052 fasta sequence
[AGGCAGAATCGCNCACGAGGTTGCTCATTGTCTGTTCCGTTTAGTGCAGCGTAACATAAATATATAGATTGAATTATTGCACTCACACACACAAAAAAAAACACAGTATGTTAACGAATTGTGCCGACGCATTAGGGCGAAACAGAGAGAAACGCTTGGCATAATATAAATGTATACATAAATACACAACAAAACAGCGTAACAGCATAGCAGCACACAGCATATAGAGCAGCGAATCCCTCTTTCCCCCCACACACGCCACAGCTACAATGCACTACGAACCACAATTATAGGAGAAAGAGCAGAAGAAGAAGGTATTAGAATGTGTTTGCAAAACAAAAAAGAACCCTTAAAATAGTAACGGTAGACCTCAGCAACCAGATAACTGATGATGTATGGCAAAAAGCGTATTAGAGAAGATGAGGGAGAAATGTATTGTCATTTATGAAAAAACAAANAGATTTAACAGAATTGCCCCCCTCCTTTCTTATCCTTCGACAAAACGCAAGCTCGTTAAAGTATCGAACCACACACAAGTTGATAGTGATAGACGACATCCTTTAGATCATATTGCAAGAGAATTTAATCACCCTTTAACAACAACAAAAAAAGCGTTAGTACAGATTGCGAACTACAAAAGCGAAAACGAAAGGAGAAACAGAGCAGAGTAGCATGGCNTTAAAAAGTGGTAAAACACCCTCTTAGAAGAGCCAAGTATAGNAGGTAAGAACCAAGAAGATTGAGANACACNCATNGTTTTTGGAAAAAAAAACGACCAAAAAGGTTCCCATGGGTTTGAATTNAAGGGNGTCTNANACCAAAAGACCNCAGGAGAAAGGCAACAGAGCAGGGGGCAAANTCACTTTACCAGGGAACNGNCAAACACAAAAGGGCCCCGGGTTGTGAAGCNCATTTTTAACCACCACAGANGNNACAGAACCTCCNGTTTGAGTCCCACCGTGTCATCCGCAGTTTGAGAGCGANCCNTGTCACAAGCCAGAGTGGTAAGCCACAGANACACAGAGANTTCGCAAGCGGGACAACCACAGCCG]
[+] EMBL BX467476 [AGGCAGAATCGCNCACGAGGTTGCTCATTGTCTGTTCCGTTTAGTGCAGCGTAACATAAATATATAGATTGAATTATTGCACTCACACACACAAAAAAAAACACAGTATGTTAACGAATTGTGCCGACGCATTAGGGCGAAACAGAGAGAAACGCTTGGCATAATATAAATGTATACATAAATACACAACAAAACAGCGTAACAGCATAGCAGCACACAGCATATAGAGCAGCGAATCCCTCTTTCCCCCCACACACGCCACAGCTACAATGCACTACGAACCACAATTATAGGAGAAAGAGCAGAAGAAGAAGGTATTAGAATGTGTTTGCAAAACAAAAAAGAACCCTTAAAATAGTAACGGTAGACCTCAGCAACCAGATAACTGATGATGTATGGCAAAAAGCGTATTAGAGAAGATGAGGGAGAAATGTATTGTCATTTATGAAAAAACAAANAGATTTAACAGAATTGCCCCCCTCCTTTCTTATCCTTCGACAAAACGCAAGCTCGTTAAAGTATCGAACCACACACAAGTTGATAGTGATAGACGACATCCTTTAGATCATATTGCAAGAGAATTTAATCACCCTTTAACAACAACAAAAAAAGCGTTAGTACAGATTGCGAACTACAAAAGCGAAAACGAAAGGAGAAACAGAGCAGAGTAGCATGGCNTTAAAAAGTGGTAAAACACCCTCTTAGAAGAGCCAAGTATAGNAGGTAAGAACCAAGAAGATTGAGANACACNCATNGTTTTTGGAAAAAAAAACGACCAAAAAGGTTCCCATGGGTTTGAATTNAAGGGNGTCTNANACCAAAAGACCNCAGGAGAAAGGCAACAGAGCAGGGGGCAAANTCACTTTACCAGGGAACNGNCAAACACAAAAGGGCCCCGGGTTGTGAAGCNCATTTTTAACCACCACAGANGNNACAGAACCTCCNGTTTGAGTCCCACCGTGTCATCCGCAGTTTGAGAGCGANCCNTGTCACAAGCCAGAGTGGTAAGCCACAGANACACAGAGANTTCGCAAGCGGGACAACCACAGCCG]
consensusID : consensus_4894#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 868 fasta sequence
[GTATTAGAGAAGATGAGGGAGAAATGTATTGTCATTTATGAAAAAAAAAAGATTTAACAGAATTGCCCCCCTCCTTTCTTATCCTTCGACAAAACGCAAGCTCGTTAAAGTATCGAACCACACACAAGTTGATAGTGATAGACGACTCCTTTAGATAATATTGCAGAGAATTTAATCACCCTTTAACAACAACAAAAAAAACGTTTAGTACAGATTGCGAACTACAAAAGCGAAAACAAAAGAGAAACAGAGAGAGTAGCATTGCATTAAAAAGTGGTAAAACACCCTCTTAGAAGAGCCAAGTATAGAGTAGAACAAGAGATGAGAACACATGTTGAAAACAACTCTGTTATAGGTTACAAAACAGAGCAACAGGAATATAAAGAAGAAAAAGGCCGCTAAGCATTACACAAAAAAAAACTCGTTATTCACTTCTCTTTAGTACTTCAAACAGTACACAAAAAAAACTACAAAAAGCAAACAACATTGAAAGGAAAAGCCCCCACACACAAACACACACTAACATTAGAAGAAGAGAATTAGAGCGATAGAGTATAATAATAGCTTAACAAACAAACAAAAAAAAACATTTCACAACCCCTTTTCGCCCGCGTCCGTTGTTTGTGAAATTGGCAAATATGAAAGCAAAATTGGATTGGACTGGAACAAAAAAACATTAGAAAATTTAACAACTTTCGCTGAATCTCTCCCACTCTCTCTCTCTCTTTTTACGACTAACTCGCAATTTTTGGCGACACGAGTGGGGATGGGGGAAAAGAAGAATGAAGAAATGATAAAATGAGGTTGGTGCGCAGTAAAACAAAACCAAGAATACAATATACGAAATGATACGATGAAGCAAAAAAAA]
[+] EMBL AGA281728 [GTATTAGAGAAGATGAGGGAGAAATGTATTGTCATTTATGAAAAAAAAAAGATTTAACAGAATTGCCCCCCTCCTTTCTTATCCTTCGACAAAACGCAAGCTCGTTAAAGTATCGAACCACACACAAGTTGATAGTGATAGACGACTCCTTTAGATAATATTGCAGAGAATTTAATCACCCTTTAACAACAACAAAAAAAACGTTTAGTACAGATTGCGAACTACAAAAGCGAAAACAAAAGAGAAACAGAGAGAGTAGCATTGCATTAAAAAGTGGTAAAACACCCTCTTAGAAGAGCCAAGTATAGAGTAGAACAAGAGATGAGAACACATGTTGAAAACAACTCTGTTATAGGTTACAAAACAGAGCAACAGGAATATAAAGAAGAAAAAGGCCGCTAAGCATTACACAAAAAAAAACTCGTTATTCACTTCTCTTTAGTACTTCAAACAGTACACAA ]
[+] EMBL BX623223 [ TTTCTTATCCTTCGACTAANCGCAAGCTCGTTAAAGTATCGAACCACACACAAGTTGATAGTGATAGACGACTCCTTTAGATAATATTGCAGAGAATTTAATCACCCTTTAACAACAACAAAAAAAACGTTTAGTACAGATTGCGAACTACAAAAGCGAAAACAAAAGAGAAACAGAGAGAGTAGCATTGCATTAAAAAGTGGTAAAACACCCTCTTAGAAGAGCCAAGTATAGAGTAGAACAAGAGATGAGAACACATGTTGAAAACAACTCTGTTATAGGTTACAAAAGAGAGCAACAGGAATATAAAGAAGAAAAAGCCCGCTAAGCATTACACAAAAAAAAACTCGTTATTCACTTCTCTTTAGTACTTCAAACAGTAAACAAAAAAAACTACAAAAAGCAAACAACATTGAAAGGAAAAGCCCCCACACACAAACACACACTAACATTAGAAGAAGAGAATTAGAGCGATAGAGTATAATAATAGCTTAACAAACAAACAAAAAAAAACATTTCACAACCCCTTTTCGCCCGCGTCCGTTGTTTGTGAAATTGGCAAATATGAAAGCAAAATTGGATTGGACTGGAA ]
[-] EMBL AGA280032 [ TAATAGCTTAACAAACAAACAAAAAAAAACATTTCACAACCCCTTTTCGCCCGCGTCCGTTGTTTGTGAAATTGGCAAATATGAAAGCAAAATTGGATTGGACTGGAACAAAAAAACATTAGAAAATTTAACAACTTTCGCTGAATCTCTCCCACTCTCTCTCTCTCTTTTTACGACTAACTCGCAATTTTTGGCGACACGAGTGGGGATGGGGGAAAAGAAGAATGAAGAAATGATAAAATGAGGTTGGTGCGCAGTAAAACAAAACCAAGAATACAATATACGAAATGATACGATGAAGCAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4894#0 AGGCAGAATCGCNCACGAGGTTGCTCATTGTCTGTTCCGTTTAGTGCAGCGTAACATAAA 60
consensus_4894#1 ------------------------------------------------------------
consensus_4894#0 TATATAGATTGAATTATTGCACTCACACACACAAAAAAAAACACAGTATGTTAACGAATT 120
consensus_4894#1 ------------------------------------------------------------
consensus_4894#0 GTGCCGACGCATTAGGGCGAAACAGAGAGAAACGCTTGGCATAATATAAATGTATACATA 180
consensus_4894#1 ------------------------------------------------------------
consensus_4894#0 AATACACAACAAAACAGCGTAACAGCATAGCAGCACACAGCATATAGAGCAGCGAATCCC 240
consensus_4894#1 ------------------------------------------------------------
consensus_4894#0 TCTTTCCCCCCACACACGCCACAGCTACAATGCACTACGAACCACAATTATAGGAGAAAG 300
consensus_4894#1 ------------------------------------------------------------
consensus_4894#0 AGCAGAAGAAGAAGGTATTAGAATGTGTTTGCAAAACAAAAAAGAACCCTTAAAATAGTA 360
consensus_4894#1 ------------------------------------------------------------
consensus_4894#0 ACGGTAGACCTCAGCAACCAGATAACTGATGATGTATGGCAAAAAGCGTATTAGAGAAGA 420
consensus_4894#1 -----------------------------------------------GTATTAGAGAAGA 13
*************
consensus_4894#0 TGAGGGAGAAATGTATTGTCATTTATGAAAAAACAAANAGATTTAACAGAATTGCCCCCC 480
consensus_4894#1 TGAGGGAGAAATGTATTGTCATTTATGAAAAAA--AAAAGATTTAACAGAATTGCCCCCC 71
********************************* ** **********************
consensus_4894#0 TCCTTTCTTATCCTTCGACAAAACGCAAGCTCGTTAAAGTATCGAACCACACACAAGTTG 540
consensus_4894#1 TCCTTTCTTATCCTTCGACAAAACGCAAGCTCGTTAAAGTATCGAACCACACACAAGTTG 131
************************************************************
consensus_4894#0 ATAGTGATAGACGACATCCTTTAGATCATATTGCAAGAGAATTTAATCACCCTTTAACAA 600
consensus_4894#1 ATAGTGATAGACGAC-TCCTTTAGATAATATTGCA-GAGAATTTAATCACCCTTTAACAA 189
*************** ********** ******** ************************
consensus_4894#0 CAACAAAAAAAGCGTT-AGTACAGATTGCGAACTACAAAAGCGAAAACGAAAGGAGAAAC 659
consensus_4894#1 CAACAAAAAAAACGTTTAGTACAGATTGCGAACTACAAAAGCGAAAAC-AAAAGAGAAAC 248
*********** **** ******************************* *** *******
consensus_4894#0 AGAGCAGAGTAGCATGGCNTTAAAAAGTGGTAAAACACCCTCTTAGAAGAGCCAAGTATA 719
consensus_4894#1 AGAG-AGAGTAGCATTGCATTAAAAAGTGGTAAAACACCCTCTTAGAAGAGCCAAGTATA 307
**** ********** ** *****************************************
consensus_4894#0 GNA---GGTAAGAACCAAGAAGA----TTGAGANACACNC----ATNGTTTTTGGAAAAA 768
consensus_4894#1 GAGTAGAACAAGAGATGAGAACACATGTTGAAAACAACTCTGTTATAGGTTACAAAACAG 367
* **** **** * **** * ** * ** * ** ** *
consensus_4894#0 AA------------AACGACCAAAAAGGTTCCCATGGGTTTGAATTNAAGGGNGTCTNAN 816
consensus_4894#1 AGCAACAGGAATATAAAGAAGAAAAAGGCCGCTAAGCATTACACAAAAAAAAACTCGTTA 427
* ** ** ******* * * * ** * ** **
consensus_4894#0 ACCA-----------------AAAGACCNCAGGAGAAAGGCAACAGAG------------ 847
consensus_4894#1 TTCACTTCTCTTTAGTACTTCAAACAGTACACAAAAAAAACTACAAAAAGCAAACAACAT 487
** *** * ** * *** * *** *
consensus_4894#0 CAGGGGGCAAANTCACTTTACCAGGGAACNGNCAAACAC-----AAAAGGGCCCCGGGTT 902
consensus_4894#1 TGAAAGGAAAAGCCCCCACACACAAACACACACTAACATTAGAAGAAGAGAATTAGAGCG 547
** *** * * ** ** * **** ** * * *
consensus_4894#0 GTGAAGCNCATT-----TTTAACCACCACAGANGNNACAGAACCTCCNGTTTGAGTCCCA 957
consensus_4894#1 ATAGAGTATAATAATAGCTTAACAAACAAACAAAAAAAAACATTTCACAACCCCTTTTCG 607
* ** * * ***** * ** * * * * * ** * *
consensus_4894#0 CCGTGTCATCCGCAGTTTGAGAGCGANCCNTGTCACAAGCCAGAGTGGTAAGCCACAGAN 1017
consensus_4894#1 CCCG--CGTCCGTTGTTTGTGAAATTGGCAAATATGAAAGCAAAATTGGATTGGACTGGA 665
** * **** ***** ** * * ** ** * * * * ** *
consensus_4894#0 ACACAGAGAN-TTCGCAAGCGGGACAACCACAGCCG------------------------ 1052
consensus_4894#1 ACAAAAAAACATTAGAAAATTTAACAACTTTCGCTGAATCTCTCCCACTCTCTCTCTCTC 725
*** * * * ** * ** ***** ** *
consensus_4894#0 ------------------------------------------------------------
consensus_4894#1 TTTTTACGACTAACTCGCAATTTTTGGCGACACGAGTGGGGATGGGGGAAAAGAAGAATG 785
consensus_4894#0 ------------------------------------------------------------
consensus_4894#1 AAGAAATGATAAAATGAGGTTGGTGCGCAGTAAAACAAAACCAAGAATACAATATACGAA 845
consensus_4894#0 -----------------------
consensus_4894#1 ATGATACGATGAAGCAAAAAAAA 868
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||