cluster # 490

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Anopheles gambiae
cluster # 490 cluster # 490 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_490#0 length = 655 sequences # 1

consensus_490#1 length = 199 sequences # 1

consensusID : consensus_490#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 655
fasta sequence

                              [CCGCCCACGCGTCCGGTACTGTACTCATGAAGGAAAAACTAATCTCCAGTTGGTTCTAGGTTTTGTTCGTCCTCATCGATTGGTTAGTTTATGTTTCGTTGCGCTGGTGAATTGTGTTTTACGTACGCGATTGCGTTTGTATCAGCATGAAAATCCACTTCCGCGAACAGTACTGCTCGAATGGAGAGGAAATTCTCTACGTCACGCCAGATCACCAAGACACTGTCGTTCGCGTAACAGTTAAGGGTGAACGGCCATCGATACGGAAGCGCTTCAGCTTAAAGCGGTTTTTCCAGCATCTCTTCCTGCCTGTTGGATATCCGGACAGTGTGAGCAGTGACTACTTATCATACCAAAAGTGGGACACGTTGCAGGCTTTCTGTAGCACCATAAGTGGAACGCTAACAACTCATGCAATCCTCAAAGGAGTTGGAGTCGGAAGCGATGCGGCCAACCCACTTTCAGCAACAATTACATGGGTGCTCAAGGATGGTACTGGACATTTGGGTAGAATACTGTTCGCCTGGTGGAAAGGTTCGGAATTAGATATCGATTCGAAAAAGTGGCGCATCCGCGCGGATATACTGAACGATGTTGCGATGGCTATTGATCTGTTCGTGCTGCCGTACTATCCGAAGGCGTCTACGTACATACT]

[+] EMBL BM589876             [CCGCCCACGCGTCCGGTACTGTACTCATGAAGGAAAAACTAATCTCCAGTTGGTTCTAGGTTTTGTTCGTCCTCATCGATTGGTTAGTTTATGTTTCGTTGCGCTGGTGAATTGTGTTTTACGTACGCGATTGCGTTTGTATCAGCATGAAAATCCACTTCCGCGAACAGTACTGCTCGAATGGAGAGGAAATTCTCTACGTCACGCCAGATCACCAAGACACTGTCGTTCGCGTAACAGTTAAGGGTGAACGGCCATCGATACGGAAGCGCTTCAGCTTAAAGCGGTTTTTCCAGCATCTCTTCCTGCCTGTTGGATATCCGGACAGTGTGAGCAGTGACTACTTATCATACCAAAAGTGGGACACGTTGCAGGCTTTCTGTAGCACCATAAGTGGAACGCTAACAACTCATGCAATCCTCAAAGGAGTTGGAGTCGGAAGCGATGCGGCCAACCCACTTTCAGCAACAATTACATGGGTGCTCAAGGATGGTACTGGACATTTGGGTAGAATACTGTTCGCCTGGTGGAAAGGTTCGGAATTAGATATCGATTCGAAAAAGTGGCGCATCCGCGCGGATATACTGAACGATGTTGCGATGGCTATTGATCTGTTCGTGCTGCCGTACTATCCGAAGGCGTCTACGTACATACT]




>consensus_490#0
CCGCCCACGCGTCCGGTACTGTACTCATGAAGGAAAAACTAATCTCCAGTTGGTTCTAGG
TTTTGTTCGTCCTCATCGATTGGTTAGTTTATGTTTCGTTGCGCTGGTGAATTGTGTTTT
ACGTACGCGATTGCGTTTGTATCAGCATGAAAATCCACTTCCGCGAACAGTACTGCTCGA
ATGGAGAGGAAATTCTCTACGTCACGCCAGATCACCAAGACACTGTCGTTCGCGTAACAG
TTAAGGGTGAACGGCCATCGATACGGAAGCGCTTCAGCTTAAAGCGGTTTTTCCAGCATC
TCTTCCTGCCTGTTGGATATCCGGACAGTGTGAGCAGTGACTACTTATCATACCAAAAGT
GGGACACGTTGCAGGCTTTCTGTAGCACCATAAGTGGAACGCTAACAACTCATGCAATCC
TCAAAGGAGTTGGAGTCGGAAGCGATGCGGCCAACCCACTTTCAGCAACAATTACATGGG
TGCTCAAGGATGGTACTGGACATTTGGGTAGAATACTGTTCGCCTGGTGGAAAGGTTCGG
AATTAGATATCGATTCGAAAAAGTGGCGCATCCGCGCGGATATACTGAACGATGTTGCGA
TGGCTATTGATCTGTTCGTGCTGCCGTACTATCCGAAGGCGTCTACGTACATACT

consensusID : consensus_490#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 199
fasta sequence

                              [CCGAACAAATGGAGCTGTCCGTACTGTACTCATGCAGGAAAAACTAATCTCCAGTTGGTTCTAGGTTTTGTTCGTCCTCATCGATTGGTTAGTTTATGTTTCGTTGCGCTGGTGAATTGTGTTTTACGTACGCGATTGCGTTTGTATCAGCATGAAAATCCACTTCCGCGAACAGTACTGCTCGAATGGAGAGGAAATT]

[+] EMBL BM600065             [CCGAACAAATGGAGCTGTCCGTACTGTACTCATGCAGGAAAAACTAATCTCCAGTTGGTTCTAGGTTTTGTTCGTCCTCATCGATTGGTTAGTTTATGTTTCGTTGCGCTGGTGAATTGTGTTTTACGTACGCGATTGCGTTTGTATCAGCATGAAAATCCACTTCCGCGAACAGTACTGCTCGAATGGAGAGGAAATT]




>consensus_490#1
CCGAACAAATGGAGCTGTCCGTACTGTACTCATGCAGGAAAAACTAATCTCCAGTTGGTT
CTAGGTTTTGTTCGTCCTCATCGATTGGTTAGTTTATGTTTCGTTGCGCTGGTGAATTGT
GTTTTACGTACGCGATTGCGTTTGTATCAGCATGAAAATCCACTTCCGCGAACAGTACTG
CTCGAATGGAGAGGAAATT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_490#0      -----CCGCCCACGCGTCCGGTACTGTACTCATGAAGGAAAAACTAATCTCCAGTTGGTT 55
consensus_490#1      CCGAACAAATGGAGCTGTCCGTACTGTACTCATGCAGGAAAAACTAATCTCCAGTTGGTT 60
                          *       **   * ************** *************************

consensus_490#0      CTAGGTTTTGTTCGTCCTCATCGATTGGTTAGTTTATGTTTCGTTGCGCTGGTGAATTGT 115
consensus_490#1      CTAGGTTTTGTTCGTCCTCATCGATTGGTTAGTTTATGTTTCGTTGCGCTGGTGAATTGT 120
                     ************************************************************

consensus_490#0      GTTTTACGTACGCGATTGCGTTTGTATCAGCATGAAAATCCACTTCCGCGAACAGTACTG 175
consensus_490#1      GTTTTACGTACGCGATTGCGTTTGTATCAGCATGAAAATCCACTTCCGCGAACAGTACTG 180
                     ************************************************************

consensus_490#0      CTCGAATGGAGAGGAAATTCTCTACGTCACGCCAGATCACCAAGACACTGTCGTTCGCGT 235
consensus_490#1      CTCGAATGGAGAGGAAATT----------------------------------------- 199
                     *******************                                         

consensus_490#0      AACAGTTAAGGGTGAACGGCCATCGATACGGAAGCGCTTCAGCTTAAAGCGGTTTTTCCA 295
consensus_490#1      ------------------------------------------------------------
                                                                                 

consensus_490#0      GCATCTCTTCCTGCCTGTTGGATATCCGGACAGTGTGAGCAGTGACTACTTATCATACCA 355
consensus_490#1      ------------------------------------------------------------
                                                                                 

consensus_490#0      AAAGTGGGACACGTTGCAGGCTTTCTGTAGCACCATAAGTGGAACGCTAACAACTCATGC 415
consensus_490#1      ------------------------------------------------------------
                                                                                 

consensus_490#0      AATCCTCAAAGGAGTTGGAGTCGGAAGCGATGCGGCCAACCCACTTTCAGCAACAATTAC 475
consensus_490#1      ------------------------------------------------------------
                                                                                 

consensus_490#0      ATGGGTGCTCAAGGATGGTACTGGACATTTGGGTAGAATACTGTTCGCCTGGTGGAAAGG 535
consensus_490#1      ------------------------------------------------------------
                                                                                 

consensus_490#0      TTCGGAATTAGATATCGATTCGAAAAAGTGGCGCATCCGCGCGGATATACTGAACGATGT 595
consensus_490#1      ------------------------------------------------------------
                                                                                 

consensus_490#0      TGCGATGGCTATTGATCTGTTCGTGCTGCCGTACTATCCGAAGGCGTCTACGTACATACT 655
consensus_490#1      ------------------------------------------------------------