cluster # 4909

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4909 cluster # 4909 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4909#0 length = 633 sequences # 3

consensus_4909#1 length = 221 sequences # 1

consensusID : consensus_4909#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 633
fasta sequence

                              [GACCCACGCGTCCGCAGCAGGGACCAAACCACAACCAACCTTTCACGCAACGAAGATAGGCATACATGTTCTCAAAACGACCCTTTCGATTTTAATCCATAATTTTACTTACTTTGTTTTTATCGTGAAATGTTTCATGTTCTGTAAACGGCTAGTTCCATTGTTTCTATTTGTACTATCGTTTTATCCTCTCCCCTTACCACTTTGCTTCCTTCACACACAGAGACTAAGAACAGAAGAATAAAAAAAACATAAATATGATAGTTTAGTCAATATATAGTGTAGCGTTAGAGAAAGTAAGGATGTTGCTCGATGCAACGATCTGTGAGCAAACAAACAAACAAACAAAAATCTGAAACCCTGAATGCTAAAACGTACTCTACAGGAAACAAAGATTGTGCAGGCAAAACAAACATTAAGAAAGCATGTTCAACAGAGCAAAACAGCTAAAGAAAGATCGCACAGACTCGATGCGAAGCTTTCAGCTATTTTGTAGTTGTTGTTTCTAATTGTGCTCTGGTTTAAGGAAAAAAGCGGCAAAAACACGATGAGTATGAGGGAGGACTGGATAGGATCTGGATCAATAAAGTACACAGTGATCTTTGGAATTTTATTCCTTACACCGATAAAAAA]

[+] EMBL BM600746             [GACCCACGCGTCCGCAGCAGGGACCAAACCACAACCAACCTTTCACGCAACGAAGATAGGCATACATGTTCTCAAAACGACCCTTTCGATTTTAATCCATAATTTTACTTACTTTGTTTTTATCGTGAAATGTTTCATGTTCTGTAAACGGCTAGTTCCATTGTTTCTATTTGTACTATCGTTTTATCCTCTCCCCTTACCACTTTGCTTCCTTCACACACAGAGACTAAGAACAGAAGAATAAAAAAAACATAAATATGATAGTTTAGTCAATATATAGTGTAGCGTTAGAGAAAGTAAGGATGTTGCTCGATGCAACGATCTGTGAGCAAACAAACAAACAAACAAAAATCTGAAACCCTGAATGCTAAAACGTACTCTACAGGAAACAAAGATTGTGCAGGCAAAACAAACATTAAGAAAGCATGTTCAACAGAGCAAAACAGCTAAAGAAAGATCGCACAGACTCGATGCGAAGCTTTCAGCTATTTTGTAGTTGTTGTTTCTAATTGTGCTCTGGTTTAAGGAAAAAAGCG                                                                                                 ]
[+] EMBL BM586447             [                GCAGGGACCAAACCACGACCAACCTTTCACGCAACGAAGATAGGCATACATGTTCTCAAAACGACCCTTTCGATTTTAATCCATAATTTTACTTACTTTGTTTTTATCGTGAAATGTATCATGTTCTGTAAACGGCTAGGTCCATTGTTTCTATTTGTACTATCGTTTTATCCTCTCCCCTTACCACTTTGCTTCCTTCACACACAGAGACTAAGAAAAGAAc                                                                                                                                                                                                                                                                                                                                                                                                          ]
[-] EMBL AGA280400            [                                                                                                                                                                                                                            CAGAGCCTAGGAACAGAAGAATAAAAAAAACATAAATATGATAGTTTAGTCAATATATAGTGTAGCGTTAGAGAAAGTAAGGATGTTGCTCGATGCAACGATCTGTGAGCAAACAAACAAACAAACAAAAATCTGAAACCCTGAATGCTAAAACGTACTCTACAGGAAACAAAGATTGTGCAGGCAAAACAAACATTAAGAAAGCATGTTCAACAGAGCAAAACAGCTAAAGAAAGATCGCACAGACTCGATGCGAAGCTTTCAGCTATTTTGTAGTTGTTGTTTCTAATTGTGCTCTGGTTTAAGGAAAAAAGCGGCAAAAACACGATGAGTATGAGGGAGGACTGGATAGGATCTGGATCAATAAAGTACACAGTGATCTTTGGAATTTTATTCCTTACACCGATAAAAAA]




>consensus_4909#0
GACCCACGCGTCCGCAGCAGGGACCAAACCACAACCAACCTTTCACGCAACGAAGATAGG
CATACATGTTCTCAAAACGACCCTTTCGATTTTAATCCATAATTTTACTTACTTTGTTTT
TATCGTGAAATGTTTCATGTTCTGTAAACGGCTAGTTCCATTGTTTCTATTTGTACTATC
GTTTTATCCTCTCCCCTTACCACTTTGCTTCCTTCACACACAGAGACTAAGAACAGAAGA
ATAAAAAAAACATAAATATGATAGTTTAGTCAATATATAGTGTAGCGTTAGAGAAAGTAA
GGATGTTGCTCGATGCAACGATCTGTGAGCAAACAAACAAACAAACAAAAATCTGAAACC
CTGAATGCTAAAACGTACTCTACAGGAAACAAAGATTGTGCAGGCAAAACAAACATTAAG
AAAGCATGTTCAACAGAGCAAAACAGCTAAAGAAAGATCGCACAGACTCGATGCGAAGCT
TTCAGCTATTTTGTAGTTGTTGTTTCTAATTGTGCTCTGGTTTAAGGAAAAAAGCGGCAA
AAACACGATGAGTATGAGGGAGGACTGGATAGGATCTGGATCAATAAAGTACACAGTGAT
CTTTGGAATTTTATTCCTTACACCGATAAAAAA

consensusID : consensus_4909#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 221
fasta sequence

                              [AAAATAAGTTGTATCCGGCGGCCCTGCACTGGAACAGTTTTTGGGAAGAAAGGTACGCTAACAAGGCGCGAACAGCAGGGACCAAACCACAACCAACCTTTCACGCAACGAAGATAGGCATACATGTTCTCAAAACGACCCTTTCGATTTTAATCCATAATTTTACTTACTTTGTTTTTATCGTGAAATGTTTCATGTTCTGTAAACGGCTAGTTCCATTG]

[+] EMBL BX616748             [AAAATAAGTTGTATCCGGCGGCCCTGCACTGGAACAGTTTTTGGGAAGAAAGGTACGCTAACAAGGCGCGAACAGCAGGGACCAAACCACAACCAACCTTTCACGCAACGAAGATAGGCATACATGTTCTCAAAACGACCCTTTCGATTTTAATCCATAATTTTACTTACTTTGTTTTTATCGTGAAATGTTTCATGTTCTGTAAACGGCTAGTTCCATTG]




>consensus_4909#1
AAAATAAGTTGTATCCGGCGGCCCTGCACTGGAACAGTTTTTGGGAAGAAAGGTACGCTA
ACAAGGCGCGAACAGCAGGGACCAAACCACAACCAACCTTTCACGCAACGAAGATAGGCA
TACATGTTCTCAAAACGACCCTTTCGATTTTAATCCATAATTTTACTTACTTTGTTTTTA
TCGTGAAATGTTTCATGTTCTGTAAACGGCTAGTTCCATTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4909#0      ----------------------------------------------------------GA 2
consensus_4909#1      AAAATAAGTTGTATCCGGCGGCCCTGCACTGGAACAGTTTTTGGGAAGAAAGGTACGCTA 60
                                                                                 *

consensus_4909#0      CCCACGCGTCCGCAGCAGGGACCAAACCACAACCAACCTTTCACGCAACGAAGATAGGCA 62
consensus_4909#1      ACAAGGCGCGAACAGCAGGGACCAAACCACAACCAACCTTTCACGCAACGAAGATAGGCA 120
                       * * ***    ************************************************

consensus_4909#0      TACATGTTCTCAAAACGACCCTTTCGATTTTAATCCATAATTTTACTTACTTTGTTTTTA 122
consensus_4909#1      TACATGTTCTCAAAACGACCCTTTCGATTTTAATCCATAATTTTACTTACTTTGTTTTTA 180
                      ************************************************************

consensus_4909#0      TCGTGAAATGTTTCATGTTCTGTAAACGGCTAGTTCCATTGTTTCTATTTGTACTATCGT 182
consensus_4909#1      TCGTGAAATGTTTCATGTTCTGTAAACGGCTAGTTCCATTG------------------- 221
                      *****************************************                   

consensus_4909#0      TTTATCCTCTCCCCTTACCACTTTGCTTCCTTCACACACAGAGACTAAGAACAGAAGAAT 242
consensus_4909#1      ------------------------------------------------------------
                                                                                  

consensus_4909#0      AAAAAAAACATAAATATGATAGTTTAGTCAATATATAGTGTAGCGTTAGAGAAAGTAAGG 302
consensus_4909#1      ------------------------------------------------------------
                                                                                  

consensus_4909#0      ATGTTGCTCGATGCAACGATCTGTGAGCAAACAAACAAACAAACAAAAATCTGAAACCCT 362
consensus_4909#1      ------------------------------------------------------------
                                                                                  

consensus_4909#0      GAATGCTAAAACGTACTCTACAGGAAACAAAGATTGTGCAGGCAAAACAAACATTAAGAA 422
consensus_4909#1      ------------------------------------------------------------
                                                                                  

consensus_4909#0      AGCATGTTCAACAGAGCAAAACAGCTAAAGAAAGATCGCACAGACTCGATGCGAAGCTTT 482
consensus_4909#1      ------------------------------------------------------------
                                                                                  

consensus_4909#0      CAGCTATTTTGTAGTTGTTGTTTCTAATTGTGCTCTGGTTTAAGGAAAAAAGCGGCAAAA 542
consensus_4909#1      ------------------------------------------------------------
                                                                                  

consensus_4909#0      ACACGATGAGTATGAGGGAGGACTGGATAGGATCTGGATCAATAAAGTACACAGTGATCT 602
consensus_4909#1      ------------------------------------------------------------
                                                                                  

consensus_4909#0      TTGGAATTTTATTCCTTACACCGATAAAAAA 633
consensus_4909#1      -------------------------------