These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4909#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 633 fasta sequence [GACCCACGCGTCCGCAGCAGGGACCAAACCACAACCAACCTTTCACGCAACGAAGATAGGCATACATGTTCTCAAAACGACCCTTTCGATTTTAATCCATAATTTTACTTACTTTGTTTTTATCGTGAAATGTTTCATGTTCTGTAAACGGCTAGTTCCATTGTTTCTATTTGTACTATCGTTTTATCCTCTCCCCTTACCACTTTGCTTCCTTCACACACAGAGACTAAGAACAGAAGAATAAAAAAAACATAAATATGATAGTTTAGTCAATATATAGTGTAGCGTTAGAGAAAGTAAGGATGTTGCTCGATGCAACGATCTGTGAGCAAACAAACAAACAAACAAAAATCTGAAACCCTGAATGCTAAAACGTACTCTACAGGAAACAAAGATTGTGCAGGCAAAACAAACATTAAGAAAGCATGTTCAACAGAGCAAAACAGCTAAAGAAAGATCGCACAGACTCGATGCGAAGCTTTCAGCTATTTTGTAGTTGTTGTTTCTAATTGTGCTCTGGTTTAAGGAAAAAAGCGGCAAAAACACGATGAGTATGAGGGAGGACTGGATAGGATCTGGATCAATAAAGTACACAGTGATCTTTGGAATTTTATTCCTTACACCGATAAAAAA] [+] EMBL BM600746 [GACCCACGCGTCCGCAGCAGGGACCAAACCACAACCAACCTTTCACGCAACGAAGATAGGCATACATGTTCTCAAAACGACCCTTTCGATTTTAATCCATAATTTTACTTACTTTGTTTTTATCGTGAAATGTTTCATGTTCTGTAAACGGCTAGTTCCATTGTTTCTATTTGTACTATCGTTTTATCCTCTCCCCTTACCACTTTGCTTCCTTCACACACAGAGACTAAGAACAGAAGAATAAAAAAAACATAAATATGATAGTTTAGTCAATATATAGTGTAGCGTTAGAGAAAGTAAGGATGTTGCTCGATGCAACGATCTGTGAGCAAACAAACAAACAAACAAAAATCTGAAACCCTGAATGCTAAAACGTACTCTACAGGAAACAAAGATTGTGCAGGCAAAACAAACATTAAGAAAGCATGTTCAACAGAGCAAAACAGCTAAAGAAAGATCGCACAGACTCGATGCGAAGCTTTCAGCTATTTTGTAGTTGTTGTTTCTAATTGTGCTCTGGTTTAAGGAAAAAAGCG ] [+] EMBL BM586447 [ GCAGGGACCAAACCACGACCAACCTTTCACGCAACGAAGATAGGCATACATGTTCTCAAAACGACCCTTTCGATTTTAATCCATAATTTTACTTACTTTGTTTTTATCGTGAAATGTATCATGTTCTGTAAACGGCTAGGTCCATTGTTTCTATTTGTACTATCGTTTTATCCTCTCCCCTTACCACTTTGCTTCCTTCACACACAGAGACTAAGAAAAGAAc ] [-] EMBL AGA280400 [ CAGAGCCTAGGAACAGAAGAATAAAAAAAACATAAATATGATAGTTTAGTCAATATATAGTGTAGCGTTAGAGAAAGTAAGGATGTTGCTCGATGCAACGATCTGTGAGCAAACAAACAAACAAACAAAAATCTGAAACCCTGAATGCTAAAACGTACTCTACAGGAAACAAAGATTGTGCAGGCAAAACAAACATTAAGAAAGCATGTTCAACAGAGCAAAACAGCTAAAGAAAGATCGCACAGACTCGATGCGAAGCTTTCAGCTATTTTGTAGTTGTTGTTTCTAATTGTGCTCTGGTTTAAGGAAAAAAGCGGCAAAAACACGATGAGTATGAGGGAGGACTGGATAGGATCTGGATCAATAAAGTACACAGTGATCTTTGGAATTTTATTCCTTACACCGATAAAAAA] consensusID : consensus_4909#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 221 fasta sequence [AAAATAAGTTGTATCCGGCGGCCCTGCACTGGAACAGTTTTTGGGAAGAAAGGTACGCTAACAAGGCGCGAACAGCAGGGACCAAACCACAACCAACCTTTCACGCAACGAAGATAGGCATACATGTTCTCAAAACGACCCTTTCGATTTTAATCCATAATTTTACTTACTTTGTTTTTATCGTGAAATGTTTCATGTTCTGTAAACGGCTAGTTCCATTG] [+] EMBL BX616748 [AAAATAAGTTGTATCCGGCGGCCCTGCACTGGAACAGTTTTTGGGAAGAAAGGTACGCTAACAAGGCGCGAACAGCAGGGACCAAACCACAACCAACCTTTCACGCAACGAAGATAGGCATACATGTTCTCAAAACGACCCTTTCGATTTTAATCCATAATTTTACTTACTTTGTTTTTATCGTGAAATGTTTCATGTTCTGTAAACGGCTAGTTCCATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4909#0 ----------------------------------------------------------GA 2 consensus_4909#1 AAAATAAGTTGTATCCGGCGGCCCTGCACTGGAACAGTTTTTGGGAAGAAAGGTACGCTA 60 * consensus_4909#0 CCCACGCGTCCGCAGCAGGGACCAAACCACAACCAACCTTTCACGCAACGAAGATAGGCA 62 consensus_4909#1 ACAAGGCGCGAACAGCAGGGACCAAACCACAACCAACCTTTCACGCAACGAAGATAGGCA 120 * * *** ************************************************ consensus_4909#0 TACATGTTCTCAAAACGACCCTTTCGATTTTAATCCATAATTTTACTTACTTTGTTTTTA 122 consensus_4909#1 TACATGTTCTCAAAACGACCCTTTCGATTTTAATCCATAATTTTACTTACTTTGTTTTTA 180 ************************************************************ consensus_4909#0 TCGTGAAATGTTTCATGTTCTGTAAACGGCTAGTTCCATTGTTTCTATTTGTACTATCGT 182 consensus_4909#1 TCGTGAAATGTTTCATGTTCTGTAAACGGCTAGTTCCATTG------------------- 221 ***************************************** consensus_4909#0 TTTATCCTCTCCCCTTACCACTTTGCTTCCTTCACACACAGAGACTAAGAACAGAAGAAT 242 consensus_4909#1 ------------------------------------------------------------ consensus_4909#0 AAAAAAAACATAAATATGATAGTTTAGTCAATATATAGTGTAGCGTTAGAGAAAGTAAGG 302 consensus_4909#1 ------------------------------------------------------------ consensus_4909#0 ATGTTGCTCGATGCAACGATCTGTGAGCAAACAAACAAACAAACAAAAATCTGAAACCCT 362 consensus_4909#1 ------------------------------------------------------------ consensus_4909#0 GAATGCTAAAACGTACTCTACAGGAAACAAAGATTGTGCAGGCAAAACAAACATTAAGAA 422 consensus_4909#1 ------------------------------------------------------------ consensus_4909#0 AGCATGTTCAACAGAGCAAAACAGCTAAAGAAAGATCGCACAGACTCGATGCGAAGCTTT 482 consensus_4909#1 ------------------------------------------------------------ consensus_4909#0 CAGCTATTTTGTAGTTGTTGTTTCTAATTGTGCTCTGGTTTAAGGAAAAAAGCGGCAAAA 542 consensus_4909#1 ------------------------------------------------------------ consensus_4909#0 ACACGATGAGTATGAGGGAGGACTGGATAGGATCTGGATCAATAAAGTACACAGTGATCT 602 consensus_4909#1 ------------------------------------------------------------ consensus_4909#0 TTGGAATTTTATTCCTTACACCGATAAAAAA 633 consensus_4909#1 ------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||