These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4912#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 875 fasta sequence [CCGCATCCATCCATAGCGGTCTTTCCAGAGCGGGAAACGGCGAGGGATAGTGCTTCATTCGTGCGAGTGTGTGTGTGAGAGAGAGAGAGAGAGTAGGAAGAAAAATGGGTCAAGCTGCGAGCCAGGAGGATGCGGAACAGGGTGGCGGCCAGGCCGGCGGCGGCGAGGAGGAGGAGGACGACGATGGAGGCATCATCCCGATGCGCTCGGATCGCTTCCTGGTGACGGACAGTGAAATTGCGTGCGAGGAGGCGGCACGATTGACGGCCGACACACAGGAATATACATCGCCGGACGATGACGATGGAGGGTGCGAGTACCACGATATGCCGCCCCCACCGGACGGAGGATACGGCTGGGTGATCGTATTCGCCTCGTTTATGTGCAACATGATCGTGGACGGCATCGCGTACACGTTCGGCGTGTTCCTGAACGAGTTCGTGGTGTACTTCGGCGAGGGCAAGGGTACGGTGGCCTGGGTGGGCAGCTTGCTCAGCGGTATGTA-CCTGAGCGCC-GGTCCGGTTGTGTCCGCGCTGGCCAACAAGTACGGCTG-CCGGGCGGTGGTGTATCGCGGGCAGCATCATCTCCT-GCGCGGCGTTTGCGCTCAGCACGCTCAGCACCTCCGTGACGATGCTGATGCTCACGTACGGCGTGAT-GGGCGGCA-TCGGGTTCGGGCTGATCTATCTGCCCGCGGTCGTGGCCGTCGGGTACTACTTCGAAACGAAGCGCTCGCTCGCCACCGGCATTGCCGTGTGCGGGTCCGGGTTCGGCACGTTCGCGTTCGCACCGCTCGCGAACATGCTGCTGGAAAACTTTGACTGGAAAAACTCCAACCTCATCCTGGCCGGGCTGATACTGAACTGTGCCGTGTTTGG] [+] EMBL BM616740 [CCGCATCCATCCATAGCGGTCTTTCCAGAGCGGGAAACGGCGAGGGATAGTGCTTCATTCGTGCGAGTGTGTGTGTGAGAGAGAGAGAGAGAGTAGGAAGAAAAATGGGTCAAGCTGCGAGCCAGGAGGATGCGGAACAGGGTGGCGGCCAGGCCGGCGGCGGCGAGGAGGAGGAGGACGACGATGGAGGCATCATCCCGATGCGCTCGGATCGCTTCCTGGTGACGGACAGTGAAATTGCGTGCGAGGAGGCGGCACGATTGACGGCCGACACACAGGAATATACATCGCCGGACGATGACGATGGAGGGTGCGAGTACCACGATATGCCGCCCCCACCGGACGGAGGATACGGCTGGGTGATCGTATTCGCCTCGTTTATGTGCAACATGATCGTGGACGGCATCGCGTACACGTTCGGCGTGTTCCTGAACGAGTTCGTGGTGTACTTCGGCGAGGGCAAGGGTACGGTGGCCTGGGTGGGCAGCTTGCTCAGCGGTATGTA CCTGAGCGCC GGTCCGGTTGTGTCCGCGCTGGCCAACAAGTACGGCTG CCGGGCGGTGGTGTATCGCGGGCAGCATCATCTCCT GCGCGGCGTTTGCGCTCAGCACGCTCAGCACCTCCGTGACGATGCTGATGCTCACGTACGGCGTGATGGGGCGGCA TCGGGTTCGGGCTGATCTATCTGCC ] [+] EMBL BM591431 [ ccgCAGGAGGATGCGGAACAGGGTGGCGGCCAGGCCGGCGGCGGCGAGGAGGAGGAGGACGACGATGGAGGCATCATCCCGATGCGCTCGGATCGCTTCCTGGTGACGGACAGTGAAATTGCGTGCGAGGAGGCGGCACGATTGACGGCCGACACACAGGAATATACATCGCCGGACGATGACGATGGAGGGTGCGAGTACCACGATATGCCGCCCCCACCGGACGGAGGATACGGCTGGGTGATCGTATTCGCCTCGTTTATGTGCAACATGATCGTGGACGGCATCGCGTACACGTTCGGCGTGTTCCTGAACGAGTTCGTGGTGTACTTCGGCGAGGGCAAGGGTACGGTGGCCTGGGTGGGCAGCTTGCTCAGCGGTATGTACCCTGAGCGCCGGGTCCGGTTGTGTCCGCGCTGGCCAACAAGTACGGCTGCCCGGGCGGTGGTGTATCGCGGGCAGCATCATCTCCTGGCGCGGCGTTTGCGCTCAGCACGCTCAGCACCTCCGTGACGATGCTGATGCTCACGTACGGCGTGAT GGGCGGCATTCGGGTTCGGGCTGATCTATCTGCCCGCGGTCGT ] [-] EMBL AGA280520 [ TGTACTTCGGCGAGGGCAAGGGTACGGTGGCCTGGGTGGGCAGCTTGCTCAGCGGTATGTA CCTGAGCGCC GGTCCGGTTGTGTCCGCGCTGGCCAACAAGTACGGCTG CCGGGCGGT GTGTATCGCGGGCAGCATCATCTCCT GCGCGGCGTTTGCGCTCAGCACGCTCAGCACCTCCGTGACGATGCTGATGCTCACGTACGGCGTGAT GGGTGGCA TCGGGTTCGGGCTGATCTATCTGCCCGCGGTCGTGGCCGTCGGGTACTACTTCGAAACGAAGCGCTCGCTCGCCACCGGCATTGCCGTGTGCGGGTCCGGGTTCGGCACGTTCGCGTTCGCACCGCTCGCGAACATGCTGCTGGAAAACTTTGACTGGAAAAACTCCAACCTCATCCTGGCCGGGCTGATACTGAACTGTGCCGTGTTTGG] consensusID : consensus_4912#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence [CCGGTTGCGTACCGATACACCATACTGTACAGTACAATACGCGACGGGTCGGGTTTAGTGTCTCCCGGTCTGAGCTCTGCTAGTAATACGGTGTAACCGCCCTGCGAACGCATCCGCATACTGTGCGTTCGGCCCGGCCGGGTGTGGGTGACTACCAAGTTCACTTTCGCATGTGCGATCAGTGTGGTGTGGATTGGGGTTTTGGGAAACGTAGATCAAGCGATTCCCCGGGCATTCTAGGTTGCTCTTAGTGATGTGTGAGGTTCAATAAGGTGTGAAATTGAAATAGTGGTGCTAGAGTTCCGTTTCGTCTTCACATAGCTTGGATTATAAGTTCGTGTAGCAGCGTGCAACAGTGTGTCCAGTGCCAACCATGACCAGTAAAGCGAGCAAAACCACGACGGACAGTGAAATTGCGTGCGAGGAGGCGGCACGATTGACGGCCGACACACAGGAATATACATCGCCGGACGATGACGATGGAGGGTGCGAGTACCACGATATGCCGCCCCCACCGGACGGAGGATACGGCTGGGTGATCGTATTCGCCTCGTTTATGTGCAACATGATCGTGGACGGCATC] [+] EMBL BM628639 [CCGGTTGCGTACCGATACACCATACTGTACAGTACAATACGCGACGGGTCGGGTTTAGTGTCTCCCGGTCTGAGCTCTGCTAGTAATACGGTGTAACCGCCCTGCGAACGCATCCGCATACTGTGCGTTCGGCCCGGCCGGGTGTGGGTGACTACCAAGTTCACTTTCGCATGTGCGATCAGTGTGGTGTGGATTGGGGTTTTGGGAAACGTAGATCAAGCGATTCCCCGGGCATTCTAGGTTGCTCTTAGTGATGTGTGAGGTTCAATAAGGTGTGAAATTGAAATAGTGGTGCTAGAGTTCCGTTTCGTCTTCACATAGCTTGGATTATAAGTTCGTGTAGCAGCGTGCAACAGTGTGTCCAGTGCCAACCATGACCAGTAAAGCGAGCAAAACCACGACGGACAGTGAAATTGCGTGCGAGGAGGCGGCACGATTGACGGCCGACACACAGGAATATACATCGCCGGACGATGACGATGGAGGGTGCGAGTACCACGATATGCCGCCCCCACCGGACGGAGGATACGGCTGGGTGATCGTATTCGCCTCGTTTATGTGCAACATGATCGTGGACGGCATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4912#0 CCGCATCCATCCATAGCGGTCTTTCCAGAGCGGGAAACGGCGAGGGATAGTGCTTCATTC 60 consensus_4912#1 ------------------------------------------------------------ consensus_4912#0 GTGCGAGTGTGTGTGTGAGAGAGAGAGAGAGAGTAGGAAGAAAAATGGGTCAAGCTGCGA 120 consensus_4912#1 ------------------------------------------------------------ consensus_4912#0 GCCAGGAGGATGCGGAACAGGGTGGCGGCCAGGCCGGCGGCGGCGAGGAGGAGGAGGACG 180 consensus_4912#1 ------------------------------------------------------------ consensus_4912#0 ACGATGGAGGCATCATCCCGATGCGCTCGGATCGCTTCCTGGTGACGGACAGTGAAATTG 240 consensus_4912#1 ------------------------------------------------------------ consensus_4912#0 CGTGCGAGGAGGCGGCACGATTGACGGCCGACACACAGGAATATACATCGCCGGACGATG 300 consensus_4912#1 ----------------CCGGTTGCGTACCGATACACCATACTGTACAGTACAATACG-CG 43 ** *** **** **** * * **** * *** * consensus_4912#0 ACGATGGAGGGTGCGAGTACCACGATATGC-CGCCCCCACCGGACGGAGGATACGGCTGG 359 consensus_4912#1 ACGGGTCGGGTTTAGTGTCTCCCGGTCTGAGCTCTGCTAGTAATACGGTGTAACCGCCCT 103 *** ** * * ** * ** * ** * * * * * * ** ** consensus_4912#0 GTGATCGTATTCGCCTCGTTTATGTGCAACATGATCGTGGACGGCATCGCGTACACGTTC 419 consensus_4912#1 GCGAACGCATCCGCATACTGTGCGTTCGGCCCGGCCGGGTGTGG-GTGACTACCAAGTTC 162 * ** ** ** *** * * * ** * * * ** * ** * * ** **** consensus_4912#0 GGCGTGTTCCTGAACGAGTT-CGTGGTGTACTTCGGCGAGGGCAAGGGTACGGTGGCCTG 478 consensus_4912#1 A-CTTTCGCATGTGCGATCAGTGTGGTGTGGATTGG---GGTTTTGGGAAACGTAGATCA 218 * * * ** *** ******* * ** ** *** * ** * consensus_4912#0 GGTGGGCAGCTTGCTCAGCGGTATGTACCTGAGCGCCGGTCCGGTTGTGTCCGCGCTGGC 538 consensus_4912#1 AGCGA-----TTCCCCGG----GCATTCTAGGTTGCTCTTAGTGATGTGTGAG-GTTCAA 268 * * ** * * * * * * ** * * ***** * * * consensus_4912#0 CAACAAGTACGGCTGCCGGGCGGTGGTGTATCGCGGGCAGCATCATCTCCTGCGCGGCGT 598 consensus_4912#1 TAAGGTGTGAAATTG--AAATAGTGGTGC-TAGAGTTCCGTTTCGTCTTC-ACATAGCTT 324 ** ** ** ****** * * * * * ** *** * * ** * consensus_4912#0 TTGCGCTCAGCACGCTCAGCACCTCCGTGACGATG---CTGATGCT---CACGTACGGCG 652 consensus_4912#1 GGATTATAAGTTCGTGTAGCAGCGT-GCAACAGTGTGTCCAGTGCCAACCATGACCAGTA 383 * ** ** **** * * ** ** * *** ** * * * consensus_4912#0 TGATGGGCGGCATCGGGTTCGGGCTGATCTATCTGCCCGCGGTCGTGGCCGTCGGGTACT 712 consensus_4912#1 AAGCGAGCAAAACCACGAC--GGACAGTGAAATTGCGTGCGAG-GAGGCGGCACGATTGA 440 * ** * * * ** * * *** *** * *** * * * consensus_4912#0 ACTTCGAAACGAAGCGCTCGCTCGCCACCGG-CATTGCCGTGTGCGGGTCCGGGTTCGGC 771 consensus_4912#1 CGGCCGACACACAGGAAT-ATACATCGCCGGACGATGACGATGGAGGGTGCGAGTACCAC 499 *** ** ** * * * **** * ** ** * **** ** ** * * consensus_4912#0 ACGTTCGCGTTCGCACCGCTCGCGAACATGCTGCTGGAAAAC----TTTGACTGGAAAAA 827 consensus_4912#1 GATATGCCGCCCCCACCGGACG-GAGGATACGGCTGGGTGATCGTATTCGCCTCGTTTAT 558 * ** * ***** ** ** ** * ***** * ** * ** * * consensus_4912#0 CTCCAACCTCATCCTGGCCGGGCTGATACTGAACTGTGCCGTGTTTGG 875 consensus_4912#1 GTGCAACATGATCGTGGACGGCATC----------------------- 583 * **** * *** *** *** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||