These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4930#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 809 fasta sequence [CCGATATTTTTGAACATCATCGTTGAGTTTAAGTAGACTATTTGCTACCCCTTATTTTACCGTGTGGACAGTGGACACACACACGTAAAGAGAGAGAGAGATAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGACAAAGAGCGGAAGTGCACCACCACCTTCACGCCTGCACAGCCACCTGCCCAGGGCAAACGGTGGGGTCAGTTCGGTTCGGTCCGGTTCGGTGTGCGCTGAATCATCCGCAGAGAATCTTATTCTATCGTGAAAAGCAGTATAGTGTTATTAAGGGTCGGTTTTACTCAGCCGATGTTATGGACATTTCAATCACGTACCATTAATGGTAGTTTTTTGAAACAAAACTCAGAGAGCGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAAAGGGGACGCTGTTATAGATGTGTTAACCCCCTAGACCGCAGCTAGACG---ATGTTTATTTTTATATACCTTAATTTATCGGCGAACCCCGATTAATGTTATCTTCCACAAGCCGAACCAAGACTCACGCATCCTCACCGTCGAGATTCGCATCATCATGCGCGATAGACAGTTCCACGTGAAAATGATGGGTGTTCCCACTAGCGAAAAAGAAAAACTGAGTGTACAGATCCAACAGTTGGCACAGTCCAAACTCTCGGCAATCCTTACCTTGTGCTGCACTTTTCGGCAGTGAATTTCGTAAGACATTCTGTTAATTTGTACGGCACGATGTGCGCCACTGTACGATTGAAATGGAATACACAAAATGCGGCGGAATTTTGCTGAATGGAAAAGAAA] [+] EMBL BM592174 [CCGATATTTTTGAACATCATCGTTGAGTTTAAGTAGACTATTTGCTACCCCTTATTTTACCGTGTGGACAGTGGACACACACACGTAAAGAGAGAGAGAGATAAAGAGAAAGAGAGAGAGAGAGAGAGAGAGAGACAAAGAGCGGAAGTGCACCACCACCTTCACGCCTGCACAGCCACCTGCCCAGGGCAAACGGTGGGGTCAGTTCGGTTCGGTCCGGTTCGGTGTGCGCTGAATCATCCGCAGAGAATCTTATTCTATCGTGAAAAGCAGTATAGTGTTATTAAGGGTCGGTTTTACTCAGCCGATGTTATGGACATTTCAATCACGTACCATTAATGGTAGTTTTTTGAAACAAAACTCAGAGAGCGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAAAGGGGACGCTGTTATAGATGTGTTAACCCCCTAGACCGCAGCTAGACG ATGTTTATTTTTATATACCTTAATTTATCGGCGAACCCCGATTAATGTTATCTTCCACAAGCCGAACCAAGACTCACGCATCCTCACCGTCGAGATTCGCATCATCATGCGCGATAGACAGTTCCACGTGAAAATGATGGGTGTTCCCACTAGCGAAAAAGAAAAACTGA ] [-] EMBL AGA281063 [ AAAGGGGACGCTGTTATAGATGTGTTATTACCCTAGACCGCAGCTAGACGATTATTTTTATTTTTATATACCTTAATTTAACGGCGAACCCCGATTAATGTTATCTTCCACAAGCCGAACCAAGACTCAAGCATCCTCCCCGTCGAGATTCGCATCATCATGCGCAATAGACAGTTCCACGTG GAATGATGGGTGTTCCCACTAGCGAAAAAGAAAAACTGAGTGTACAGATCCAACAGTTGGCACAGTCCAAACTCTCGGCAATCCTTACCTTGTGCTGCACTTTTCGGCAGTGAATTTCGTAAGACATTCTGTTAATTTGTACGGCACGATGTGCGCCACTGTACGATTGAAATGGAATACACAAAATGCGGCGGAATTTTGCTGAATGGAAAAGAAA] consensusID : consensus_4930#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 388 fasta sequence [ATTTTACCGCGTGGTCGTGTGTGGACAGTGGACATACACACACACACGGACGTACACAGAGAGAGAGAGAGAGAGAGATAACGAGCGGAGGTGCACCACCACTTTCACGCCTGCACAGCCACCTGCCCAGGGCAAACGGTGGGGTCAGTTCTGTTCGGTCCGGTTCGGTGCGCGCTGAATCATCCGCAGAGAATCTTATTCTATCGTGAAAACAAGTTTAGTGTTATTAAGGGTCGGTTTTACTCAGCCGATGTTACGGACATTTCAATCACGTACCATGTATGGTAGTTTTTTGAAACAAAACATATAGAGCGAGAGAGAGAGAGATAGAGAGAGCGAAAGGGGACGCTGTTATAGATGTGTTATTACCCTAGACCGCAGCTAGACG] [+] EMBL AGA282691 [ATTTTACCGCGTGGTCGTGTGTGGACAGTGGACATACACACACACACGGACGTACACAGAGAGAGAGAGAGAGAGAGATAACGAGCGGAGGTGCACCACCACTTTCACGCCTGCACAGCCACCTGCCCAGGGCAAACGGTGGGGTCAGTTCTGTTCGGTCCGGTTCGGTGCGCGCTGAATCATCCGCAGAGAATCTTATTCTATCGTGAAAACAAGTTTAGTGTTATTAAGGGTCGGTTTTACTCAGCCGATGTTACGGACATTTCAATCACGTACCATGTATGGTAGTTTTTTGAAACAAAACATATAGAGCGAGAGAGAGAGAGATAGAGAGAGCGAAAGGGGACGCTGTTATAGATGTGTTATTACCCTAGACCGCAGCTAGACG] [+] EMBL AGA282692 [ATTTTACCGCGTGGTCGTGTGTGGACAGTGGACATACACACACACACGGACGTGCACAGAGAGAGAGAGAGAGAGAGATAACGAGCGGAGGTGCACCACCACTTTCACGCCTGCACAGCCACCTGCCCAGGGCAAACGGTGGGGTCAGTTCTGTTCGGTCCGGTTCGGTGCGCGCTGAATCATCCGCAGAGAATCTTATTCTATCGTGAAAACAAGTTTAGTGTTATTAAGGGTCGGTTTTACTCAGCCGATGTTACGGACATTTCAATCACGTACCATGTATGGTAGTTTTTTGAAACAAAACATANAGAGCGAGAGAGAGAGAGATAGAGAGAGCGAAAGGGGACGCTGTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4930#0 CCGATATTTTTGAACATCATCGTTGAGTTTAAGTAGACTATTTGCTACCCCTTATTTTAC 60 consensus_4930#1 -----------------------------------------------------ATTTTAC 7 ******* consensus_4930#0 CGTGTGGACAGTGGACACACACACGTAAAGAGAGAGAGAGATAAAGAGAAAGAGAGAGAG 120 consensus_4930#1 CGCGTGGTC-GTGTGTGGACA---GTGGACATACACACACACACGGACGTACACAGAGAG 63 ** **** * *** *** ** * * * * * * * * ** * * ****** consensus_4930#0 AGAGAGAGAGAGAGACAAAGAGCGGAAGTGCACCACCACCTTCACGCCTGCACAGCCACC 180 consensus_4930#1 AGAGAGAGAGAGAGATAACGAGCGGAGGTGCACCACCACTTTCACGCCTGCACAGCCACC 123 *************** ** ******* ************ ******************** consensus_4930#0 TGCCCAGGGCAAACGGTGGGGTCAGTTCGGTTCGGTCCGGTTCGGTGTGCGCTGAATCAT 240 consensus_4930#1 TGCCCAGGGCAAACGGTGGGGTCAGTTCTGTTCGGTCCGGTTCGGTGCGCGCTGAATCAT 183 **************************** ****************** ************ consensus_4930#0 CCGCAGAGAATCTTATTCTATCGTGAAAAGCAGTATAGTGTTATTAAGGGTCGGTTTTAC 300 consensus_4930#1 CCGCAGAGAATCTTATTCTATCGTGAAAACAAGTTTAGTGTTATTAAGGGTCGGTTTTAC 243 ***************************** *** ************************* consensus_4930#0 TCAGCCGATGTTATGGACATTTCAATCACGTACCATTAATGGTAGTTTTTTGAAACAAAA 360 consensus_4930#1 TCAGCCGATGTTACGGACATTTCAATCACGTACCATGTATGGTAGTTTTTTGAAACAAAA 303 ************* ********************** ********************** consensus_4930#0 CTCAGAGAGCGAGAAAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAGCGAAAGGGGAC 420 consensus_4930#1 CATATAGAGCGAGA----------------GAGAGAGAGATAGAGAGAGCGAAAGGGGAC 347 * * ********* ********** ******************* consensus_4930#0 GCTGTTATAGATGTGTTAACCCCCTAGACCGCAGCTAGACGATGTTTATTTTTATATACC 480 consensus_4930#1 GCTGTTATAGATGTGTTATTACCCTAGACCGCAGCTAGACG------------------- 388 ****************** ******************** consensus_4930#0 TTAATTTATCGGCGAACCCCGATTAATGTTATCTTCCACAAGCCGAACCAAGACTCACGC 540 consensus_4930#1 ------------------------------------------------------------ consensus_4930#0 ATCCTCACCGTCGAGATTCGCATCATCATGCGCGATAGACAGTTCCACGTGAAAATGATG 600 consensus_4930#1 ------------------------------------------------------------ consensus_4930#0 GGTGTTCCCACTAGCGAAAAAGAAAAACTGAGTGTACAGATCCAACAGTTGGCACAGTCC 660 consensus_4930#1 ------------------------------------------------------------ consensus_4930#0 AAACTCTCGGCAATCCTTACCTTGTGCTGCACTTTTCGGCAGTGAATTTCGTAAGACATT 720 consensus_4930#1 ------------------------------------------------------------ consensus_4930#0 CTGTTAATTTGTACGGCACGATGTGCGCCACTGTACGATTGAAATGGAATACACAAAATG 780 consensus_4930#1 ------------------------------------------------------------ consensus_4930#0 CGGCGGAATTTTGCTGAATGGAAAAGAAA 809 consensus_4930#1 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||