These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4932#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 843 fasta sequence [CCGCCCACGCGTCCGGTCTAGAGCTGCTGCAAAGCTTCATCCGGCGCAAGCAGGTGGGAACGCGCAGCAGCGACACGGAGCAGGTAGAGCTGCTGATTCAGCTGATCGATCCGATCGTGCCCACGCTGGTGGAATCGCTCGATTCGAAGCACTCGAAAATCATTTGCCATTCGATCAACTGCTTTAGCGCGCTGTTGGCCACAGAGTGGCCACTGAAAAGTTTCCAGCAGCCCGAAACGCTCGACGCGATCGTGGCGGCGATCTTCACCATACTGCACCGCTACAACACGGTCGCGCTCGACGTGAACAATCCCAACATCGGCATGGTGCGGGCGAGCTTCCGGGCGATCGTCGCCGTGCTGAAGTACGCCAACGCGTCGTACAGCTTCACGGAGGAGCAGCTGCGCCTGGCTGGTGATGTACATCGAGCAGGGATTTGGCGGTCGGTGGAGGTCGCCAAACGACTGCGTTCGTGCTGTTGCGTTCGCTGCTCGGCCGGCGCTACAGCTTCCCCGAGCTGCAGCAGCTGATGAGCAAGGTGTTTGAAATGTGCGTGCGGTCGGAAAGCGATACAGAGCGAGCGGAATGTCGGCAAAACATAGTAGATTATGTCATGAACTACCCAACGAGCAAGAAGGTAAAGAACTATCTGCTTTTCTTTGTCGATCAACTGCCATACGAAGTGCAGTCGGGACGTGAATCTGCTTGCCTGCTGCTGAAAACGCTGTTCCAGAAGTTGCCCAAGTCGACAATCGACCAAAACAACAGTGCGCTGTTCTTTGCGCTCGGCGTCCGGCTGGTCAACGAGGACGACACCGACATCCGAACGCTCGTGGCCGAATG] [+] EMBL BM592105 [CCGCCCACGCGTCCGGTCTAGAGCTGCTGCAAAGCTTCATCCGGCGCAAGCAGGTGGGAACGCGCAGCAGCGACACGGAGCAGGTAGAGCTGCTGATTCAGCTGATCGATCCGATCGTGCCCACGCTGGTGGAATCGCTCGATTCGAAGCACTCGAAAATCATTTGCCATTCGATCAACTGCTTTAGCGCGCTGTTGGCCACAGAGTGGCCACTGAAAAGTTTCCAGCAGCCCGAAACGCTCGACGCGATCGTGGCGGCGATCTTCACCATACTGCACCGCTACAACACGGTCGCGCTCGACGTGAACAATCCCAACATCGGCATGGTGCGGGCGAGCTTCCGGGCGATCGTCGCCGTGCTGAAGTACGCCAACGCGTCGTACAGCTTCACGGAGGAGCAGCTGCGCCTGGCTGGTGATGTACATCGAGCAGGGATTTGGCGGTCGGTGGAGGTCGCCAAACGACTGCGTTCGTGCTGTTGCGTTCGCTGCTCGGCCGGCGCTACAGCTTCCCCGAGCTGCAGCAGCTGATGAGCAAGGTGTTTGAAATGTGCGTGCGGTCGGAAAGCGATACAGAGCGAGCGGAATGTCGGCAAAACATAGTAGATTATGTCATGAACTACCCAACGAG ] [+] EMBL BX606762 [ GATCGTGGCGGCGATCTTCACCATACTGCACCGCTACAACACGGTCGCACTCGACGTGAACAATCCCAACATCGGCATGGTGCGGGCGAGCTTCCGGGCGATCGTCGCCGTGCTGAAGTACGCCAACGCGTCGTACAGCTTCACGGAGGAGCAGCTGCGCCT GCTGGTGATGTACATCGAGCA GGATTTGGCGGTCGGTGGAGGTCGCCAAACGACTGCGTTCGTGCTGTTGCGTTCGCTGCTCGGCCGGCGCTACAGCTTCCCCGAGCTGCAGCAGCTGATGAGCAAGGTGTTTGAAATGTGCGTGCGGTCGGAAAGCGATACAGAGCGAGCGGAATGTCGGCAAAACATAGTAGATTATGTCATGAACTACCCAACGAGCAAGAAGGTAAAGAACTATCTGCTTTTCTTTGTCGATCAACTGCCATACGAAG ] [-] EMBL AGA282700 [ TCGGTGGAGGTCCCCAAACGACTGCGTTCGTGCTGTTGCGTTCGCTGCTCGGCCGGCGCTACAGCTTCCCCGAGCTGCAGCAGCTGATGAGCAAGGTGTTTGAAATGTGCGTGCGGTCGGAAAGCGATACAGAGCGAGCGGAATGTCGGCAAAACATAGTAGATTATGTCATGAACTACCCAACGAGCAAGAAGGTAAAGAACTATCTGCTTTTCTTTGTCGATCAACTGCAATACGAAGTGCAGTCGGGACGTGAATCTGCTTGCCTGCTGCTGAAAACGCTGTTCCAGAAGTTGCCCAAGTCGACAATCGACCAAAACAACAGTGCGCTGTTCTTTGCGCTCGGCGTCCGGCTGGTCAACGAGGACGACACCGACATCCGAACGCTCGTGGCCGAATG] consensusID : consensus_4932#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 271 fasta sequence [GCTGGATCTGATCCTGGCAAAGACGGAAGGCAACGATCCCACCTTCCTGGAGTGTGGTCTAGAGCTGCTGCAAAGCTTCATCCGGCGCAAGCAGGTGGGAACGCGCAGCAGCGACACGGAGCAGGTAGAGCTGCTGATTCAGCTGATCGATCCGATCGTGCCCACGCTGGTGGAATCGCTCGATTCGAAGCACTCGAAAATCATTTGCCATTCGATCAACTGCTTTAGCGCACTGTTGGCCACAGAGTGGCCACTGAAAAGTTTCCAGCAG] [+] EMBL AGA281072 [GCTGGATCTGATCCTGGCAAAGACGGAAGGCAACGATCCCACCTTCCTGGAGTGTGGTCTAGAGCTGCTGCAAAGCTTCATCCGGCGCAAGCAGGTGGGAACGCGCAGCAGCGACACGGAGCAGGTAGAGCTGCTGATTCAGCTGATCGATCCGATCGTGCCCACGCTGGTGGAATCGCTCGATTCGAAGCACTCGAAAATCATTTGCCATTCGATCAACTGCTTTAGCGCACTGTTGGCCACAGAGTGGCCACTGAAAAGTTTCCAGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4932#0 -----------------------------------------CCGCCCACGCGTCCGGTCT 19 consensus_4932#1 GCTGGATCTGATCCTGGCAAAGACGGAAGGCAACGATCCCACCTTCCTGGAGTGTGGTCT 60 ** ** * ** ***** consensus_4932#0 AGAGCTGCTGCAAAGCTTCATCCGGCGCAAGCAGGTGGGAACGCGCAGCAGCGACACGGA 79 consensus_4932#1 AGAGCTGCTGCAAAGCTTCATCCGGCGCAAGCAGGTGGGAACGCGCAGCAGCGACACGGA 120 ************************************************************ consensus_4932#0 GCAGGTAGAGCTGCTGATTCAGCTGATCGATCCGATCGTGCCCACGCTGGTGGAATCGCT 139 consensus_4932#1 GCAGGTAGAGCTGCTGATTCAGCTGATCGATCCGATCGTGCCCACGCTGGTGGAATCGCT 180 ************************************************************ consensus_4932#0 CGATTCGAAGCACTCGAAAATCATTTGCCATTCGATCAACTGCTTTAGCGCGCTGTTGGC 199 consensus_4932#1 CGATTCGAAGCACTCGAAAATCATTTGCCATTCGATCAACTGCTTTAGCGCACTGTTGGC 240 *************************************************** ******** consensus_4932#0 CACAGAGTGGCCACTGAAAAGTTTCCAGCAGCCCGAAACGCTCGACGCGATCGTGGCGGC 259 consensus_4932#1 CACAGAGTGGCCACTGAAAAGTTTCCAGCAG----------------------------- 271 ******************************* consensus_4932#0 GATCTTCACCATACTGCACCGCTACAACACGGTCGCGCTCGACGTGAACAATCCCAACAT 319 consensus_4932#1 ------------------------------------------------------------ consensus_4932#0 CGGCATGGTGCGGGCGAGCTTCCGGGCGATCGTCGCCGTGCTGAAGTACGCCAACGCGTC 379 consensus_4932#1 ------------------------------------------------------------ consensus_4932#0 GTACAGCTTCACGGAGGAGCAGCTGCGCCTGGCTGGTGATGTACATCGAGCAGGGATTTG 439 consensus_4932#1 ------------------------------------------------------------ consensus_4932#0 GCGGTCGGTGGAGGTCGCCAAACGACTGCGTTCGTGCTGTTGCGTTCGCTGCTCGGCCGG 499 consensus_4932#1 ------------------------------------------------------------ consensus_4932#0 CGCTACAGCTTCCCCGAGCTGCAGCAGCTGATGAGCAAGGTGTTTGAAATGTGCGTGCGG 559 consensus_4932#1 ------------------------------------------------------------ consensus_4932#0 TCGGAAAGCGATACAGAGCGAGCGGAATGTCGGCAAAACATAGTAGATTATGTCATGAAC 619 consensus_4932#1 ------------------------------------------------------------ consensus_4932#0 TACCCAACGAGCAAGAAGGTAAAGAACTATCTGCTTTTCTTTGTCGATCAACTGCCATAC 679 consensus_4932#1 ------------------------------------------------------------ consensus_4932#0 GAAGTGCAGTCGGGACGTGAATCTGCTTGCCTGCTGCTGAAAACGCTGTTCCAGAAGTTG 739 consensus_4932#1 ------------------------------------------------------------ consensus_4932#0 CCCAAGTCGACAATCGACCAAAACAACAGTGCGCTGTTCTTTGCGCTCGGCGTCCGGCTG 799 consensus_4932#1 ------------------------------------------------------------ consensus_4932#0 GTCAACGAGGACGACACCGACATCCGAACGCTCGTGGCCGAATG 843 consensus_4932#1 -------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||