cluster # 4943

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Anopheles gambiae
cluster # 4943 cluster # 4943 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4943#0 length = 858 sequences # 2

consensus_4943#1 length = 546 sequences # 2

consensusID : consensus_4943#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 858
fasta sequence

                              [TTAATCGGATATTCTTCTTGTTCTATTTGCGTATGTGTGTGATCTGGTGTTTGATTATAATCGATTTATTTGTCCTTTTTTTTCTTCGATGCATTATCATTCATTATACTTACCTGTTTACTCCACCCCACCAATACCGGGAAACGAGTATCCCTGCGTTTAGTCAGACTGATCGTTGTTGTTTCCAACTTCTATTGCCTTATTAACTCGTAATGCTCGTTGTTTTTTTTACACTTGCGCGGCTGTTTTTCTTTGGAAGTCGCGAGAAACGACAAACTCGTTAGGTAGAGCGTGCCCACCCCGGCTGCTACCACCATGATTGTAGGACATACCAGGCAAACAGACAGACAGATAAAGATAGACAGGAGGGAGTAGAAAGCGTACATACTGTGTTCGGCATCGTTTCGGCCATAAATGTGATTCCTGTGTGGAGGAAAGCTATTAAAATTAAAGTTAAAATTATGTACACTGTAAAGGTGGAAGTGGTGGAAAAAGCTTACCCGCACGCTCTGTGTAGGTGAGCGTGAAACTAAGACATACACCACTGGACCGCACGTCAGTTAGGTAGGGGAGGAGAAAGGGTAATGTTTCGATCCTCGTTCCGGAGAAAAAGTTATTAAGCACATGGTGTATGTGTGTGGGTGCGTTGGTATGGGAAGGATATTTGGTTTGAATTTTGCCACCGTTGCGTGTGCCCCACTTCTCTTAACAAGCGAGCAAAACCAGGCATATAAGCAGGGATCGATCGGGGCGCAATGGCAGAATTTCTACATTATATTAAGAAAGCAGCTTACTGTGTAACCATTCTTTATCTTTATTATTACATTATCCTTATTATATTATGACATGTATTGATAT]

[+] EMBL BX616474             [TTAATCGGATATTCTTCTTGTTCTATTTGCGTATGTGTGTGATCTGGTGTTTGATTATAATCGATTTATTTGTCCTTTTTTTTCTTCGATGCATTATCATTCATTATACTTACCTGTTTACTCCACCCCACCAATACCGGGAAACGAGTATCCCTGCGTTTAGTCAGACTGATCGTTGTTGTTTCCAACTTCTATTGCCTTATTAACTCGTAATGCTCGTTGTTTTTTTTACACTTGCGCGGCTGTTTTTCTTTGGAAGTCGCGAGAAACGACAAACTCGTTAGGTAGAGCGTGCCCACCCCGGCTGCTACCACCATGATTGTAGGACATACCAGGCAAACAGACAGACAGATAAAGATAGACAGGAGGGAGTAGAAAGCGTACATACTGTGTTCGGCATCGTTTCGGCCATAAATGTGATTCCTGTGTGGAGGAAAGCTATTAAAATTAAAGTTAAAATTATGTACACTGTAAAGGTGGAAGTGGTGGAAAAAGCTTACCCGCACGCTCTGTGTAGGTGAGCGTGAAACTAAGACATACACCACTGGACCGCACGTCAGTTAGGT                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX625195             [                                                                                TTTCTTCGATGCATTATCATTCATTATACTTACCTGTTTACTCCACCCCACCAATACCGGGAAACGAGTATCCCTGCGTTTAGTCAGACTGATCGTTGTTGTTTCCAACTTCTATTGCCTTATTAACTCGTAATGCTCGTTGTTTTTTTTACACTTGCGCGGCTGTTTTTCTTTGGAAGTCGCGAGAAACGACAAACTCGTTAGGTAGAGCGTGCCCACCCCGGCTGCTACCACCATGATTGTAGGACATACCAGGCAAACAGACAGACAGATAAAGATAGACAGGAGGGAGTAGAAAGCGTACATACTGTGTTCGGCATCGTTTCGGCCATAAATGTGATTCCTGTGTGGAGGAAAGCTATTAAAATTAAAGTTAAAATTATGTACACTGTAAAGGTGGAAGTGGTGGAAAAAGCTTACCCGCACGCTCTGTGTAGGTGAGCGTGAAACTAAGACATACACCACTGGACCGCACGTCAGTTAGGTAGGGGAGGAGAAAGGGTAATGTTTCGATCCTCGTTCCGGAGAAAAAGTTATTAAGCACATGGTGTATGTGTGTGGGTGCGTTGGTATGGGAAGGATATTTGGTTTGAATTTTGCCACCGTTGCGTGTGCCCCACTTCTCTTAACAAGCGAGCAAAACCAGGCATATAAGCAGGGATCGATCGGGGCGCAATGGCAGAATTTCTACATTATATTAAGAAAGCAGCTTACTGTGTAACCATTCTTTATCTTTATTATTACATTATCCTTATTATATTATGACATGTATTGATAT]




>consensus_4943#0
TTAATCGGATATTCTTCTTGTTCTATTTGCGTATGTGTGTGATCTGGTGTTTGATTATAA
TCGATTTATTTGTCCTTTTTTTTCTTCGATGCATTATCATTCATTATACTTACCTGTTTA
CTCCACCCCACCAATACCGGGAAACGAGTATCCCTGCGTTTAGTCAGACTGATCGTTGTT
GTTTCCAACTTCTATTGCCTTATTAACTCGTAATGCTCGTTGTTTTTTTTACACTTGCGC
GGCTGTTTTTCTTTGGAAGTCGCGAGAAACGACAAACTCGTTAGGTAGAGCGTGCCCACC
CCGGCTGCTACCACCATGATTGTAGGACATACCAGGCAAACAGACAGACAGATAAAGATA
GACAGGAGGGAGTAGAAAGCGTACATACTGTGTTCGGCATCGTTTCGGCCATAAATGTGA
TTCCTGTGTGGAGGAAAGCTATTAAAATTAAAGTTAAAATTATGTACACTGTAAAGGTGG
AAGTGGTGGAAAAAGCTTACCCGCACGCTCTGTGTAGGTGAGCGTGAAACTAAGACATAC
ACCACTGGACCGCACGTCAGTTAGGTAGGGGAGGAGAAAGGGTAATGTTTCGATCCTCGT
TCCGGAGAAAAAGTTATTAAGCACATGGTGTATGTGTGTGGGTGCGTTGGTATGGGAAGG
ATATTTGGTTTGAATTTTGCCACCGTTGCGTGTGCCCCACTTCTCTTAACAAGCGAGCAA
AACCAGGCATATAAGCAGGGATCGATCGGGGCGCAATGGCAGAATTTCTACATTATATTA
AGAAAGCAGCTTACTGTGTAACCATTCTTTATCTTTATTATTACATTATCCTTATTATAT
TATGACATGTATTGATAT

consensusID : consensus_4943#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 546
fasta sequence

                              [CACCATGATTGTAGGACATACCAGGCAAACAGACAGACAGATAAAGATAGACAGGAGGGAGTAGAAAGCGTACATACTGTGTTCGGCATCGTTTCGGCCATAAATGTGATTCCTGTGTGGAGGAAAGCTATTAAAATTAAAGTTAAAATTATGTACACTGTAAAGGTGGAAGTGGTGGAAAAAGCTTACCCGCACGCTCTGTGTAGGTGAGCGTGAAACTAAGACATACACCACTGGACCGCACGTCAGTTAGGTAGGGGAGGAGAAAGGGTAATGTTTCGATCCTCGTTCCGGAGAAAAAGTTATTAAGCACATGGTGTATGTGTGTGGGTGCGTTGGTATGGGAAGGATATTTGGTTTGAATTTTGCCACCGTTGCGTGTGCCCCACTTCTCTTAACAAGCGAGCAAAACCAGGCATATAAGCAGGGATCGATCGGGGCGCAATGGCAGAATTTCTACATTATATTAAGAAAGCAGCTTACTGTGTAACCATTCTTATCTTTATTATTACATTATCCTTATTATATTATGAAAAAAAAAAAAAA]

[+] EMBL AGA282965            [CACCATGATTGTAGGACATACCAGGCAAACAGACAGACAGATAAAGATAGACAGGAGGGAGTAGAAAGCGTACATACTGTGTTCGGCATCGTTTCGGCCATAAATGTGATTCCTGTGTGGAGGAAAGCTATTAAAATTAAAGTTAAAATTATGTACACTGTAAAGGTGGAAGTGGTGGAAAAAGCTTACCCGCACGCTCTGTGTAGGTGAGCGTGAAACTAAGACATACACCACTGGACCGCACGTCAGTTAGGTAGGGGAGGAGAAAGGGTAATGTTTCGATCCTCGTTCCGGAGAAAAAGTTATTAAGCACATGGTGTATGTGTGTGGGTGCGTTGGTATGGGAAGGATATTTGGTTTGAATTTTGCCACCGTTGCGTGTGCCCCACTTCTCTTAACAAGCGAGCAAAACCAGGCATATAAGCAGGGATCGATCGGGGCGCAATGGCAGAATTTCTACATTATATTAAGAAAGCAGCTTACTGTGTAACCATTCTTATCTTTATTATTACATTATCCTTATTATATTATGAAAAAAAAAAAAAA]
[-] EMBL AGA281358            [ ACCATGATTGTAGGACATACCAGGCAAACAGACAGACAGATAAAGATAGACAGGAGGGAGTAGAAAGCGTACATACTGTGTTCGGCATCGTTTCGGCCATAAATGTGATTCCTGTGTGGAGGAAAGCTATTAAAATTAAAGTTAAAATTATGTACACTGTAAAGGTGGAAGTGGTGGAAAAAGCTTACCCGCACGCTCTGTGTAGGTGAGCGTGAAACTAAGACATACACCACTGGACCGCACGTCAGTTAGGTAGGGGAGGAGAAAGGGTAATGTTTCGATCCTCGTTCCGGAGAAAAAGTTATTAAGCACATGGTGTATGTGTGTGGGTGCGTTGGTATGGGAAGGATATTTGGTTTGAATTTTGCCACCGTTGCGTGTGCCCCACTTCTCTTAACAAGCGAGCAAAACCAGGCATATAAGCAGGGATCGATCGGGGCGCAATGGCAGAATTTCTACATTATATTAAGAAAGCAGCTTACTGTGTAACCATTCTTATCTTTATTATTACATTATCCTTATTATATTATGAAAAAAAAAA    ]




>consensus_4943#1
CACCATGATTGTAGGACATACCAGGCAAACAGACAGACAGATAAAGATAGACAGGAGGGA
GTAGAAAGCGTACATACTGTGTTCGGCATCGTTTCGGCCATAAATGTGATTCCTGTGTGG
AGGAAAGCTATTAAAATTAAAGTTAAAATTATGTACACTGTAAAGGTGGAAGTGGTGGAA
AAAGCTTACCCGCACGCTCTGTGTAGGTGAGCGTGAAACTAAGACATACACCACTGGACC
GCACGTCAGTTAGGTAGGGGAGGAGAAAGGGTAATGTTTCGATCCTCGTTCCGGAGAAAA
AGTTATTAAGCACATGGTGTATGTGTGTGGGTGCGTTGGTATGGGAAGGATATTTGGTTT
GAATTTTGCCACCGTTGCGTGTGCCCCACTTCTCTTAACAAGCGAGCAAAACCAGGCATA
TAAGCAGGGATCGATCGGGGCGCAATGGCAGAATTTCTACATTATATTAAGAAAGCAGCT
TACTGTGTAACCATTCTTATCTTTATTATTACATTATCCTTATTATATTATGAAAAAAAA
AAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4943#0      TTAATCGGATATTCTTCTTGTTCTATTTGCGTATGTGTGTGATCTGGTGTTTGATTATAA 60
consensus_4943#1      ------------------------------------------------------------
                                                                                  

consensus_4943#0      TCGATTTATTTGTCCTTTTTTTTCTTCGATGCATTATCATTCATTATACTTACCTGTTTA 120
consensus_4943#1      ------------------------------------------------------------
                                                                                  

consensus_4943#0      CTCCACCCCACCAATACCGGGAAACGAGTATCCCTGCGTTTAGTCAGACTGATCGTTGTT 180
consensus_4943#1      ------------------------------------------------------------
                                                                                  

consensus_4943#0      GTTTCCAACTTCTATTGCCTTATTAACTCGTAATGCTCGTTGTTTTTTTTACACTTGCGC 240
consensus_4943#1      ------------------------------------------------------------
                                                                                  

consensus_4943#0      GGCTGTTTTTCTTTGGAAGTCGCGAGAAACGACAAACTCGTTAGGTAGAGCGTGCCCACC 300
consensus_4943#1      ------------------------------------------------------------
                                                                                  

consensus_4943#0      CCGGCTGCTACCACCATGATTGTAGGACATACCAGGCAAACAGACAGACAGATAAAGATA 360
consensus_4943#1      -----------CACCATGATTGTAGGACATACCAGGCAAACAGACAGACAGATAAAGATA 49
                                 *************************************************

consensus_4943#0      GACAGGAGGGAGTAGAAAGCGTACATACTGTGTTCGGCATCGTTTCGGCCATAAATGTGA 420
consensus_4943#1      GACAGGAGGGAGTAGAAAGCGTACATACTGTGTTCGGCATCGTTTCGGCCATAAATGTGA 109
                      ************************************************************

consensus_4943#0      TTCCTGTGTGGAGGAAAGCTATTAAAATTAAAGTTAAAATTATGTACACTGTAAAGGTGG 480
consensus_4943#1      TTCCTGTGTGGAGGAAAGCTATTAAAATTAAAGTTAAAATTATGTACACTGTAAAGGTGG 169
                      ************************************************************

consensus_4943#0      AAGTGGTGGAAAAAGCTTACCCGCACGCTCTGTGTAGGTGAGCGTGAAACTAAGACATAC 540
consensus_4943#1      AAGTGGTGGAAAAAGCTTACCCGCACGCTCTGTGTAGGTGAGCGTGAAACTAAGACATAC 229
                      ************************************************************

consensus_4943#0      ACCACTGGACCGCACGTCAGTTAGGTAGGGGAGGAGAAAGGGTAATGTTTCGATCCTCGT 600
consensus_4943#1      ACCACTGGACCGCACGTCAGTTAGGTAGGGGAGGAGAAAGGGTAATGTTTCGATCCTCGT 289
                      ************************************************************

consensus_4943#0      TCCGGAGAAAAAGTTATTAAGCACATGGTGTATGTGTGTGGGTGCGTTGGTATGGGAAGG 660
consensus_4943#1      TCCGGAGAAAAAGTTATTAAGCACATGGTGTATGTGTGTGGGTGCGTTGGTATGGGAAGG 349
                      ************************************************************

consensus_4943#0      ATATTTGGTTTGAATTTTGCCACCGTTGCGTGTGCCCCACTTCTCTTAACAAGCGAGCAA 720
consensus_4943#1      ATATTTGGTTTGAATTTTGCCACCGTTGCGTGTGCCCCACTTCTCTTAACAAGCGAGCAA 409
                      ************************************************************

consensus_4943#0      AACCAGGCATATAAGCAGGGATCGATCGGGGCGCAATGGCAGAATTTCTACATTATATTA 780
consensus_4943#1      AACCAGGCATATAAGCAGGGATCGATCGGGGCGCAATGGCAGAATTTCTACATTATATTA 469
                      ************************************************************

consensus_4943#0      AGAAAGCAGCTTACTGTGTAACCATTCTTTATCTTTATTATTACATTATCCTTATTATAT 840
consensus_4943#1      AGAAAGCAGCTTACTGTGTAACCATTCTT-ATCTTTATTATTACATTATCCTTATTATAT 528
                      ***************************** ******************************

consensus_4943#0      TATGACATGTATTGATAT 858
consensus_4943#1      TATGAAAAAAAAAAAAAA 546
                      ***** *   *   * *