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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4955#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 756 fasta sequence
[GAGAGAGAGAGAGGGAGAAATATTGTGAATTAACTAGTGATTGGTGCTAGCCCCGAACTTCTTTCCAGTCATTTCCCTCTTTTTTTAGTTTCTGAAAAGAACTCACAACGTGAATTTACACCGATATCGGAAGTGAACTTTCCCTTGCCCTTGTCTCTACTATTGCATTGTTTTCCCCCTTCCCGGTTGCAATAATTTCAACACAAATGGGCTGAAGCAGGGTGTAGAAGTATCAAAAAGCGGAAGGAATCGTACGCACGCACGCACACTTACACACATTCTCAAAGGATGTTGATAGCACTAGAAAGTAAGGAAGGTTTGCCCACTTGCGCTGCGTATTTAGTAGATCGAGTTTAGAGTTTTAGATACACACACATACATGAGATTGCTAGGAGCCCGAAAAGAAGGATCAGGAGAGGATGGAATTTTATGTCCCTAATTGAAGAGGAAAGCAAGCAAAGCATAATAATAAAGCAGGGCTATAGTAGTAGTATATGTATGTGTCGGAAGTAAGAAACAAAAATCAAAGTTGTGCAAAGGCAAATAAAAATGCAAAACAAAGGTTAATATCTAATGCGTGTTTGATAAGATATGTACGTAGAGGAAGAAGAAGAAGAAGAAGCATCAAACACACAACACTCACACACACACATAAACACAAAAAGTAGTTAAGAACGTGTGGTGTCTCTGCATAAAAAGAGAGAGAGAGAGCGAGANAAGGCGTGTGTCCGTGACCTTAGTGACCACCGCACGACG]
[+] EMBL BX624722 [GAGAGAGAGAGAGGGAGAAATATTGTGAATTAACTAGTGATTGGTGCTAGCCCCGAACTTCTTTCCAGTCATTTCCCTCTTTTTTTAGTTTCTGAAAAGAACTCACAACGTGAATTTACACCGATATCGGAAGTGAACTTTCCCTTGCCCTTGTCTCTACTATTGCATTGTTTTCCCCCTTCCCGGTTGCAATAATTTCAACACAAATGGGCTGAAGCAGGGTGTAGAAGTATCAAAAAGCGGAAGGAATCGTACGCACGCACGCACACTTACACACATTCTCAAAGGATGTTGATAGCACTAGAAAGTAAGGAAGGTTTGCCCACTTGCGCTGCGTATTTAGTAGATCGAGTTTAGAGTTTTAGATACACACACATACATGAGATTGCTAGGAGCCCGAAAAGAAGGATCAGGAGAGGATGGAATTTTATGTCCCTAATTGAAGAGGAAAGCAAGCAAAGCATAATAATAAAGCAGGGCTATAGTAGTAGTATATGTATGTGTCGGAAGTAAGAAACAAAAATCAAAGTTGTGCAAAGGCAAATAAAAATGCAAAACAAAGGTTAATATCTAATGCGTGTTTGATAAGATATGTACGTAGAGGAAGAAGAAGAAGAAGAAGCATCAAACACACAACACTCACACACACACATAAACACAAAAAGTAGTTAAGAACGTGTGGTGTCTCTGCATAAAAAGAGAGAGAGAGAGCGAGANAAGGCGTGTGTCCGTGACCTTAGTGACCACCGCACGACG]
consensusID : consensus_4955#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence
[GAGGGCTAGATCAAAGTGTGCGGCAGCGGCGGGTGTGGTGCGGTGGAGAAAAAGCAAAAAAAAAAGCGTGCTGAGGTAATCTCTTAACGAGGGTGAGAAGATTTGTGCAAATGTATTGACGACCATCATCATCAGCAACAGCAGCAGCAGCAGCAGCACGGTCGGAATCATCGTCATCTACAAACTATCGGTGTCCCAATCGATTGGATGTGTGGTGCGCTTCATCACCATCGACAAAAGAATTCCGGTGCGGTGCGGTGGCCGTGTGTGTGCTGTGTCGTCGTCGGTCGTGACGGTTCACGGTTCCGCACAGTGTGTGTCGGAGTGTAGTCGGATGCAAAGTGTCAGGCGCAAGTGTGCCGTCGTCGTCGTCGTCGTTGTCGTCGTCAAAGCGGTGAGACTAGCGGTTAAAGCAACCCCGAGCACACATCCGGAAGCGCGAGTGGTGTGGTGCGGTGGAATTTATAGTCCCTAATTGAAGAGGAAAGCAAGCAAAGCATAATAATAAAGCAGGGCTATAGTAGTAGTATATGTATGTGTCGGAAGTAAGAAACAAAAATCAAAGTTGTGCAAAGGCAAATAAAAATGCAAAACAAAGGTTAATATC]
[+] EMBL AL934814 [GAGGGCTAGATCAAAGTGTGCGGCAGCGGCGGGTGTGGTGCGGTGGAGAAAAAGCAAAAAAAAAAGCGTGCTGAGGTAATCTCTTAACGAGGGTGAGAAGATTTGTGCAAATGTATTGACGACCATCATCATCAGCAACAGCAGCAGCAGCAGCAGCACGGTCGGAATCATCGTCATCTACAAACTATCGGTGTCCCAATCGATTGGATGTGTGGTGCGCTTCATCACCATCGACAAAAGAATTCCGGTGCGGTGCGGTGGCCGTGTGTGTGCTGTGTCGTCGTCGGTCGTGACGGTTCACGGTTCCGCACAGTGTGTGTCGGAGTGTAGTCGGATGCAAAGTGTCAGGCGCAAGTGTGCCGTCGTCGTCGTCGTCGTTGTCGTCGTCAAAGCGGTGAGACTAGCGGTTAAAGCAACCCCGAGCACACATCCGGAAGCGCGAGTGGTGTGGTGCGGTGGAATTTATAGTCCCTAATTGAAGAGGAAAGCAAGCAAAGCATAATAATAAAGCAGGGCTATAGTAGTAGTATATGTATGTGTCGGAAGTAAGAAACAAAAATCAAAGTTGTGCAAAGGCAAATAAAAATGCAAAACAAAGGTTAATATC]
consensusID : consensus_4955#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence
[CCGCCCACGCGTCCGGTGAGGACAAACCCTTCCCTCCTGAACCTCCCACCTCTCCCCTTTGCAGCAGGGGGGCTAGAGGTGGGATGGTGGGTGGTGGTTACTTATGAGAGTAGACAGTAAGTGGTAACAATAATAGTAACAATAATAATAATTGCGCAAAGCAAGGGGGGGGGGGGTTGGTGGGTCGGTGGCGCACATTGTCTATTTCGAAAGCCCCTACACCCTACACACCAACACTAATAGATGAGGATAGATCCATAAGCGAGATACACACAGAAAAACACACACACAAAAGTACACAAATTCCAGTAGATACGTAAGAGTTAGAAGGGAGTGGGGGAGAGGTTTCCTTATTATTCATACAAACACAGCTACAGCTACACACACACATAGTTAGGAGGGGGTTTACCTGAATGATAAAGCCCCTGCAAGCGGAAGTAGTACTGCAAGAGACGATGCATACGATCATAGGCAAAAGTGCATCGGAGATGCTTGGAGGGGGAAGGGAGAGGGGATGGAATTTTATGTCCCTAATTGAAGAGGAAAGCAAGCAAAGCATAATAATAAAGCAGGGCTATAGTAGTAGTATATGT]
[+] EMBL BM606773 [CCGCCCACGCGTCCGGTGAGGACAAACCCTTCCCTCCTGAACCTCCCACCTCTCCCCTTTGCAGCAGGGGGGCTAGAGGTGGGATGGTGGGTGGTGGTTACTTATGAGAGTAGACAGTAAGTGGTAACAATAATAGTAACAATAATAATAATTGCGCAAAGCAAGGGGGGGGGGGGTTGGTGGGTCGGTGGCGCACATTGTCTATTTCGAAAGCCCCTACACCCTACACACCAACACTAATAGATGAGGATAGATCCATAAGCGAGATACACACAGAAAAACACACACACAAAAGTACACAAATTCCAGTAGATACGTAAGAGTTAGAAGGGAGTGGGGGAGAGGTTTCCTTATTATTCATACAAACACAGCTACAGCTACACACACACATAGTTAGGAGGGGGTTTACCTGAATGATAAAGCCCCTGCAAGCGGAAGTAGTACTGCAAGAGACGATGCATACGATCATAGGCAAAAGTGCATCGGAGATGCTTGGAGGGGGAAGGGAGAGGGGATGGAATTTTATGTCCCTAATTGAAGAGGAAAGCAAGCAAAGCATAATAATAAAGCAGGGCTATAGTAGTAGTATATGT]
consensusID : consensus_4955#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence
[AGTGTCGGCGCAAGTGTGCCGTCGTCGTCGTCGTCGTTGTCGTCGTCAAAGCGTTAAAGCAACCCCCGAGCACACATCCGGAAGCGCGAGTGGTGTGGTGCGGTGGAGAAAAAGCAAAAAAAAAGCGTGCTGAGGTAATCTCTTAACGAGGGTGAGGAGAAGCAGATCAAAGTGTGCGGCAGCGGCGGTGGTGGAGCGGCTTCAAGATGACACTGAACGATGAGAATGGGGCCAGCAGCAATAATGTTGTCGTCACGGCAGCAAGTGGAACGGGACTGTCAGCGGCGGGAACCGGATCAGATCGACCAGCGCCAGCAGGTACGCAGCCGGTTGGGTTGGGTGGGTGGGGNGCANCCACCGGGCAAGCGACCGGCCCAAACGGGGGCATCGGGGCACCCATCAACAGTAGCGCGAAC]
[+] EMBL AGA281713 [AGTGTCGGCGCAAGTGTGCCGTCGTCGTCGTCGTCGTTGTCGTCGTCAAAGCGTTAAAGCAACCCCCGAGCACACATCCGGAAGCGCGAGTGGTGTGGTGCGGTGGAGAAAAAGCAAAAAAAAAGCGTGCTGAGGTAATCTCTTAACGAGGGTGAGGAGAAGCAGATCAAAGTGTGCGGCAGCGGCGGTGGTGGAGCGGCTTCAAGATGACACTGAACGATGAGAATGGGGCCAGCAGCAATAATGTTGTCGTCACGGCAGCAAGTGGAACGGGACTGTCAGCGGCGGGAACCGGATCAGATCGACCAGCGCCAGCAGGTACGCAGCCGGTTGGGTTGGGTGGGTGGGGNGCANCCACCGGGCAAGCGACCGGCCCAAACGGGGGCATCGGGGCACCCATCAACAGTAGCGCGAAC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4955#1 ---------------------GAGGGCTAGATCAAAGTGTGCGGCAGCGGCGGGTGTGGT 39
consensus_4955#3 ------------------------------------------------------------
consensus_4955#0 ------------------------------------------------------------
consensus_4955#2 CCGCCCACGCGTCCGGTGAGGACAAACCCTTCCCTCCTGAACCTCCCACCTCTCCCCTTT 60
consensus_4955#1 GCGGTGGAGAAAAAGCAAAAAAAAAAGCGTGCTGAGGTAATCTCTTAACGAGGGTGAGAA 99
consensus_4955#3 ----------------------------------------------------------AG 2
consensus_4955#0 ----GAGAGAGAGAGAGGGAGAAATATTGTGAATTAACTAGTGATTGGTGCTAGCCCCGA 56
consensus_4955#2 GCAGCAGGGGGGCTAGAGGTGGGATGGTGGGTGGTGGTTACTTATGAGAG-TAGACAGTA 119
consensus_4955#1 GATTTGTGCAAATGTATTGACGACCATCATCATCAGCAACAGCAGCA-GCAGCAGCAGCA 158
consensus_4955#3 TGTCGGCGCAAGTGTGCCGTCG-TCGTCGTCGTCGTTGTCGTCGTCA-A-AGC------- 52
consensus_4955#0 ACTTCTTTCCAGTCATTTCCCTCTTTTTTTAGTTTCTGAAAAGAACTCACAACGTGA--- 113
consensus_4955#2 AGTGGTAACAATAATAGTAACAATAATAATAATTGCGCAAAGCAAGGGGGGGGGGGGTTG 179
* * * * * * *
consensus_4955#1 C--GGTCGGAATCA-TCGTCATCTAC----AAACTATCGGTGTCC------CAATCGATT 205
consensus_4955#3 ----GTTAAAGCAA-CCCCCGAGCAC----ACATC--CGGAAGCG------CGAGTG--- 92
consensus_4955#0 ----ATTTACACCG-ATATCGGAAGT----GAACTTTCCCTTGCC------CTTGTCTCT 158
consensus_4955#2 GTGGGTCGGTGGCGCACATTGTCTATTTCGAAAGCCCCTACACCCTACACACCAACACTA 239
* * * * *
consensus_4955#1 GGATGTGTGGTGCGCTTCATCACC-----ATCGACAAAAGAATTCCGGTGCGGTGCGGTG 260
consensus_4955#3 ----GTGTGGTGCGGTGGAGAAAA-----AGCAA-AAAAAAAGCGTGCTGAGGTAATCTC 142
consensus_4955#0 ACTATTGCATTGTTTTCCCCCTTC-----CCGGTTGCAATAATTTCAACACAAATGGGCT 213
consensus_4955#2 ATAGATGAGGATAGATCCATAAGCGAGATACACACAGAAAAACACACACACAAAAGTACA 299
** * ** **
consensus_4955#1 GCCGT----GTGTGTGCTGTGTCGTCGTCGGTCGTGACGGTTCACGGTTCCGCACAGTGT 316
consensus_4955#3 TTAAC----GAGGGTGAGGAGAAGCAGATCAAAGTGTGCGGCAGCGGCGGTGGTGGAGCG 198
consensus_4955#0 GAAGC----A-GGGTGTAGAAGTATCAAAAAGCGGAAGGAATCGTACGCACGCAC-GCAC 267
consensus_4955#2 CAAATTCCAGTAGATACGTAAGAGTTAGAAGGGAGTGGGGGAGAGGTTTCCTTATTATTC 359
*
consensus_4955#1 GTGTCGGAGTGTAGTCGGATGCAAAGTGTCAGGC--GCAAGTGTGCCGTCGTCGTCGTCG 374
consensus_4955#3 GCTTCAAGATGACACTGAACGATGAGAATGGGGCCAGCAGCAATAATGTTGTCGTCACGG 258
consensus_4955#0 ACTTACACACATTCTCAAAGGATGTTGATAGCACTAGAAAGTAAGGAAGGTTTGCCCACT 327
consensus_4955#2 ATACAAACACAGCTACAGCTACACACACACATAGTTAGGAGGGGGTTTACCTGAATGATA 419
*
consensus_4955#1 TCGTTGTCGTCGTCAAAGCGGTGAGACTAGCGGTTAAAGCAACC--CCGAGCACACAT-- 430
consensus_4955#3 CAGCAAGTGGAACGGGACTGTCAGCGGCGGGAACCGGATCAGAT--CGACCAGCGCCA-- 314
consensus_4955#0 TGCGCTGCGTATTTAGTAGATCGAGTTTAGAGTTTTAGATACAC--ACACATACATGAGA 385
consensus_4955#2 AAGCCCCTGCAAGCGGAAGTAGTACTGCAAGAGACGATGCATACGATCATAGGCAAAAGT 479
* * *
consensus_4955#1 ---CCGGAAGCGCGAGTGGTGTGGTGCG-G------TGGAATTTATAGTCCCTAATTGAA 480
consensus_4955#3 ---GCAGGTACGCAGCCGGTTGGGTTGG-G------TGGG--TGGGGNGCANCCACCGGG 362
consensus_4955#0 TTGCTAGGAGCCCGAAAAGAAGGATCAG-GAGAGGATGGAATTTTATGTCCCTAATTGAA 444
consensus_4955#2 GCATCGGAGATGCTTGGAGGGGGAAGGGAGAGGGGATGGAATTTTATGTCCCTAATTGAA 539
* * * * * * *** * * * *
consensus_4955#1 GAGGAAAGCAAGCAAAGCATAATAATAAAGCAGGGCTATAGTAGTAGTATATGTATGTGT 540
consensus_4955#3 CAAGCGACCGGCCCAAACGGGGGCATCGGGGCACCCATCAACAGTAGCGCGAAC------ 416
consensus_4955#0 GAGGAAAGCAAGCAAAGCATAATAATAAAGCAGGGCTATAGTAGTAGTATATGTATGTGT 504
consensus_4955#2 GAGGAAAGCAAGCAAAGCATAATAATAAAGCAGGGCTATAGTAGTAGTATATGT------ 593
* * * * * ** * ** * * * *****
consensus_4955#1 CGGAAGTAAGAAACAAAAATCAAAGTTGTGCAAAGGCAAATAAAAATGCAAAACAAAGGT 600
consensus_4955#3 ------------------------------------------------------------
consensus_4955#0 CGGAAGTAAGAAACAAAAATCAAAGTTGTGCAAAGGCAAATAAAAATGCAAAACAAAGGT 564
consensus_4955#2 ------------------------------------------------------------
consensus_4955#1 TAATATC----------------------------------------------------- 607
consensus_4955#3 ------------------------------------------------------------
consensus_4955#0 TAATATCTAATGCGTGTTTGATAAGATATGTACGTAGAGGAAGAAGAAGAAGAAGAAGCA 624
consensus_4955#2 ------------------------------------------------------------
consensus_4955#1 ------------------------------------------------------------
consensus_4955#3 ------------------------------------------------------------
consensus_4955#0 TCAAACACACAACACTCACACACACACATAAACACAAAAAGTAGTTAAGAACGTGTGGTG 684
consensus_4955#2 ------------------------------------------------------------
consensus_4955#1 ------------------------------------------------------------
consensus_4955#3 ------------------------------------------------------------
consensus_4955#0 TCTCTGCATAAAAAGAGAGAGAGAGAGCGAGANAAGGCGTGTGTCCGTGACCTTAGTGAC 744
consensus_4955#2 ------------------------------------------------------------
consensus_4955#1 ------------
consensus_4955#3 ------------
consensus_4955#0 CACCGCACGACG 756
consensus_4955#2 ------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||