These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4955#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 756 fasta sequence [GAGAGAGAGAGAGGGAGAAATATTGTGAATTAACTAGTGATTGGTGCTAGCCCCGAACTTCTTTCCAGTCATTTCCCTCTTTTTTTAGTTTCTGAAAAGAACTCACAACGTGAATTTACACCGATATCGGAAGTGAACTTTCCCTTGCCCTTGTCTCTACTATTGCATTGTTTTCCCCCTTCCCGGTTGCAATAATTTCAACACAAATGGGCTGAAGCAGGGTGTAGAAGTATCAAAAAGCGGAAGGAATCGTACGCACGCACGCACACTTACACACATTCTCAAAGGATGTTGATAGCACTAGAAAGTAAGGAAGGTTTGCCCACTTGCGCTGCGTATTTAGTAGATCGAGTTTAGAGTTTTAGATACACACACATACATGAGATTGCTAGGAGCCCGAAAAGAAGGATCAGGAGAGGATGGAATTTTATGTCCCTAATTGAAGAGGAAAGCAAGCAAAGCATAATAATAAAGCAGGGCTATAGTAGTAGTATATGTATGTGTCGGAAGTAAGAAACAAAAATCAAAGTTGTGCAAAGGCAAATAAAAATGCAAAACAAAGGTTAATATCTAATGCGTGTTTGATAAGATATGTACGTAGAGGAAGAAGAAGAAGAAGAAGCATCAAACACACAACACTCACACACACACATAAACACAAAAAGTAGTTAAGAACGTGTGGTGTCTCTGCATAAAAAGAGAGAGAGAGAGCGAGANAAGGCGTGTGTCCGTGACCTTAGTGACCACCGCACGACG] [+] EMBL BX624722 [GAGAGAGAGAGAGGGAGAAATATTGTGAATTAACTAGTGATTGGTGCTAGCCCCGAACTTCTTTCCAGTCATTTCCCTCTTTTTTTAGTTTCTGAAAAGAACTCACAACGTGAATTTACACCGATATCGGAAGTGAACTTTCCCTTGCCCTTGTCTCTACTATTGCATTGTTTTCCCCCTTCCCGGTTGCAATAATTTCAACACAAATGGGCTGAAGCAGGGTGTAGAAGTATCAAAAAGCGGAAGGAATCGTACGCACGCACGCACACTTACACACATTCTCAAAGGATGTTGATAGCACTAGAAAGTAAGGAAGGTTTGCCCACTTGCGCTGCGTATTTAGTAGATCGAGTTTAGAGTTTTAGATACACACACATACATGAGATTGCTAGGAGCCCGAAAAGAAGGATCAGGAGAGGATGGAATTTTATGTCCCTAATTGAAGAGGAAAGCAAGCAAAGCATAATAATAAAGCAGGGCTATAGTAGTAGTATATGTATGTGTCGGAAGTAAGAAACAAAAATCAAAGTTGTGCAAAGGCAAATAAAAATGCAAAACAAAGGTTAATATCTAATGCGTGTTTGATAAGATATGTACGTAGAGGAAGAAGAAGAAGAAGAAGCATCAAACACACAACACTCACACACACACATAAACACAAAAAGTAGTTAAGAACGTGTGGTGTCTCTGCATAAAAAGAGAGAGAGAGAGCGAGANAAGGCGTGTGTCCGTGACCTTAGTGACCACCGCACGACG] consensusID : consensus_4955#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 607 fasta sequence [GAGGGCTAGATCAAAGTGTGCGGCAGCGGCGGGTGTGGTGCGGTGGAGAAAAAGCAAAAAAAAAAGCGTGCTGAGGTAATCTCTTAACGAGGGTGAGAAGATTTGTGCAAATGTATTGACGACCATCATCATCAGCAACAGCAGCAGCAGCAGCAGCACGGTCGGAATCATCGTCATCTACAAACTATCGGTGTCCCAATCGATTGGATGTGTGGTGCGCTTCATCACCATCGACAAAAGAATTCCGGTGCGGTGCGGTGGCCGTGTGTGTGCTGTGTCGTCGTCGGTCGTGACGGTTCACGGTTCCGCACAGTGTGTGTCGGAGTGTAGTCGGATGCAAAGTGTCAGGCGCAAGTGTGCCGTCGTCGTCGTCGTCGTTGTCGTCGTCAAAGCGGTGAGACTAGCGGTTAAAGCAACCCCGAGCACACATCCGGAAGCGCGAGTGGTGTGGTGCGGTGGAATTTATAGTCCCTAATTGAAGAGGAAAGCAAGCAAAGCATAATAATAAAGCAGGGCTATAGTAGTAGTATATGTATGTGTCGGAAGTAAGAAACAAAAATCAAAGTTGTGCAAAGGCAAATAAAAATGCAAAACAAAGGTTAATATC] [+] EMBL AL934814 [GAGGGCTAGATCAAAGTGTGCGGCAGCGGCGGGTGTGGTGCGGTGGAGAAAAAGCAAAAAAAAAAGCGTGCTGAGGTAATCTCTTAACGAGGGTGAGAAGATTTGTGCAAATGTATTGACGACCATCATCATCAGCAACAGCAGCAGCAGCAGCAGCACGGTCGGAATCATCGTCATCTACAAACTATCGGTGTCCCAATCGATTGGATGTGTGGTGCGCTTCATCACCATCGACAAAAGAATTCCGGTGCGGTGCGGTGGCCGTGTGTGTGCTGTGTCGTCGTCGGTCGTGACGGTTCACGGTTCCGCACAGTGTGTGTCGGAGTGTAGTCGGATGCAAAGTGTCAGGCGCAAGTGTGCCGTCGTCGTCGTCGTCGTTGTCGTCGTCAAAGCGGTGAGACTAGCGGTTAAAGCAACCCCGAGCACACATCCGGAAGCGCGAGTGGTGTGGTGCGGTGGAATTTATAGTCCCTAATTGAAGAGGAAAGCAAGCAAAGCATAATAATAAAGCAGGGCTATAGTAGTAGTATATGTATGTGTCGGAAGTAAGAAACAAAAATCAAAGTTGTGCAAAGGCAAATAAAAATGCAAAACAAAGGTTAATATC] consensusID : consensus_4955#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 593 fasta sequence [CCGCCCACGCGTCCGGTGAGGACAAACCCTTCCCTCCTGAACCTCCCACCTCTCCCCTTTGCAGCAGGGGGGCTAGAGGTGGGATGGTGGGTGGTGGTTACTTATGAGAGTAGACAGTAAGTGGTAACAATAATAGTAACAATAATAATAATTGCGCAAAGCAAGGGGGGGGGGGGTTGGTGGGTCGGTGGCGCACATTGTCTATTTCGAAAGCCCCTACACCCTACACACCAACACTAATAGATGAGGATAGATCCATAAGCGAGATACACACAGAAAAACACACACACAAAAGTACACAAATTCCAGTAGATACGTAAGAGTTAGAAGGGAGTGGGGGAGAGGTTTCCTTATTATTCATACAAACACAGCTACAGCTACACACACACATAGTTAGGAGGGGGTTTACCTGAATGATAAAGCCCCTGCAAGCGGAAGTAGTACTGCAAGAGACGATGCATACGATCATAGGCAAAAGTGCATCGGAGATGCTTGGAGGGGGAAGGGAGAGGGGATGGAATTTTATGTCCCTAATTGAAGAGGAAAGCAAGCAAAGCATAATAATAAAGCAGGGCTATAGTAGTAGTATATGT] [+] EMBL BM606773 [CCGCCCACGCGTCCGGTGAGGACAAACCCTTCCCTCCTGAACCTCCCACCTCTCCCCTTTGCAGCAGGGGGGCTAGAGGTGGGATGGTGGGTGGTGGTTACTTATGAGAGTAGACAGTAAGTGGTAACAATAATAGTAACAATAATAATAATTGCGCAAAGCAAGGGGGGGGGGGGTTGGTGGGTCGGTGGCGCACATTGTCTATTTCGAAAGCCCCTACACCCTACACACCAACACTAATAGATGAGGATAGATCCATAAGCGAGATACACACAGAAAAACACACACACAAAAGTACACAAATTCCAGTAGATACGTAAGAGTTAGAAGGGAGTGGGGGAGAGGTTTCCTTATTATTCATACAAACACAGCTACAGCTACACACACACATAGTTAGGAGGGGGTTTACCTGAATGATAAAGCCCCTGCAAGCGGAAGTAGTACTGCAAGAGACGATGCATACGATCATAGGCAAAAGTGCATCGGAGATGCTTGGAGGGGGAAGGGAGAGGGGATGGAATTTTATGTCCCTAATTGAAGAGGAAAGCAAGCAAAGCATAATAATAAAGCAGGGCTATAGTAGTAGTATATGT] consensusID : consensus_4955#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence [AGTGTCGGCGCAAGTGTGCCGTCGTCGTCGTCGTCGTTGTCGTCGTCAAAGCGTTAAAGCAACCCCCGAGCACACATCCGGAAGCGCGAGTGGTGTGGTGCGGTGGAGAAAAAGCAAAAAAAAAGCGTGCTGAGGTAATCTCTTAACGAGGGTGAGGAGAAGCAGATCAAAGTGTGCGGCAGCGGCGGTGGTGGAGCGGCTTCAAGATGACACTGAACGATGAGAATGGGGCCAGCAGCAATAATGTTGTCGTCACGGCAGCAAGTGGAACGGGACTGTCAGCGGCGGGAACCGGATCAGATCGACCAGCGCCAGCAGGTACGCAGCCGGTTGGGTTGGGTGGGTGGGGNGCANCCACCGGGCAAGCGACCGGCCCAAACGGGGGCATCGGGGCACCCATCAACAGTAGCGCGAAC] [+] EMBL AGA281713 [AGTGTCGGCGCAAGTGTGCCGTCGTCGTCGTCGTCGTTGTCGTCGTCAAAGCGTTAAAGCAACCCCCGAGCACACATCCGGAAGCGCGAGTGGTGTGGTGCGGTGGAGAAAAAGCAAAAAAAAAGCGTGCTGAGGTAATCTCTTAACGAGGGTGAGGAGAAGCAGATCAAAGTGTGCGGCAGCGGCGGTGGTGGAGCGGCTTCAAGATGACACTGAACGATGAGAATGGGGCCAGCAGCAATAATGTTGTCGTCACGGCAGCAAGTGGAACGGGACTGTCAGCGGCGGGAACCGGATCAGATCGACCAGCGCCAGCAGGTACGCAGCCGGTTGGGTTGGGTGGGTGGGGNGCANCCACCGGGCAAGCGACCGGCCCAAACGGGGGCATCGGGGCACCCATCAACAGTAGCGCGAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4955#1 ---------------------GAGGGCTAGATCAAAGTGTGCGGCAGCGGCGGGTGTGGT 39 consensus_4955#3 ------------------------------------------------------------ consensus_4955#0 ------------------------------------------------------------ consensus_4955#2 CCGCCCACGCGTCCGGTGAGGACAAACCCTTCCCTCCTGAACCTCCCACCTCTCCCCTTT 60 consensus_4955#1 GCGGTGGAGAAAAAGCAAAAAAAAAAGCGTGCTGAGGTAATCTCTTAACGAGGGTGAGAA 99 consensus_4955#3 ----------------------------------------------------------AG 2 consensus_4955#0 ----GAGAGAGAGAGAGGGAGAAATATTGTGAATTAACTAGTGATTGGTGCTAGCCCCGA 56 consensus_4955#2 GCAGCAGGGGGGCTAGAGGTGGGATGGTGGGTGGTGGTTACTTATGAGAG-TAGACAGTA 119 consensus_4955#1 GATTTGTGCAAATGTATTGACGACCATCATCATCAGCAACAGCAGCA-GCAGCAGCAGCA 158 consensus_4955#3 TGTCGGCGCAAGTGTGCCGTCG-TCGTCGTCGTCGTTGTCGTCGTCA-A-AGC------- 52 consensus_4955#0 ACTTCTTTCCAGTCATTTCCCTCTTTTTTTAGTTTCTGAAAAGAACTCACAACGTGA--- 113 consensus_4955#2 AGTGGTAACAATAATAGTAACAATAATAATAATTGCGCAAAGCAAGGGGGGGGGGGGTTG 179 * * * * * * * consensus_4955#1 C--GGTCGGAATCA-TCGTCATCTAC----AAACTATCGGTGTCC------CAATCGATT 205 consensus_4955#3 ----GTTAAAGCAA-CCCCCGAGCAC----ACATC--CGGAAGCG------CGAGTG--- 92 consensus_4955#0 ----ATTTACACCG-ATATCGGAAGT----GAACTTTCCCTTGCC------CTTGTCTCT 158 consensus_4955#2 GTGGGTCGGTGGCGCACATTGTCTATTTCGAAAGCCCCTACACCCTACACACCAACACTA 239 * * * * * consensus_4955#1 GGATGTGTGGTGCGCTTCATCACC-----ATCGACAAAAGAATTCCGGTGCGGTGCGGTG 260 consensus_4955#3 ----GTGTGGTGCGGTGGAGAAAA-----AGCAA-AAAAAAAGCGTGCTGAGGTAATCTC 142 consensus_4955#0 ACTATTGCATTGTTTTCCCCCTTC-----CCGGTTGCAATAATTTCAACACAAATGGGCT 213 consensus_4955#2 ATAGATGAGGATAGATCCATAAGCGAGATACACACAGAAAAACACACACACAAAAGTACA 299 ** * ** ** consensus_4955#1 GCCGT----GTGTGTGCTGTGTCGTCGTCGGTCGTGACGGTTCACGGTTCCGCACAGTGT 316 consensus_4955#3 TTAAC----GAGGGTGAGGAGAAGCAGATCAAAGTGTGCGGCAGCGGCGGTGGTGGAGCG 198 consensus_4955#0 GAAGC----A-GGGTGTAGAAGTATCAAAAAGCGGAAGGAATCGTACGCACGCAC-GCAC 267 consensus_4955#2 CAAATTCCAGTAGATACGTAAGAGTTAGAAGGGAGTGGGGGAGAGGTTTCCTTATTATTC 359 * consensus_4955#1 GTGTCGGAGTGTAGTCGGATGCAAAGTGTCAGGC--GCAAGTGTGCCGTCGTCGTCGTCG 374 consensus_4955#3 GCTTCAAGATGACACTGAACGATGAGAATGGGGCCAGCAGCAATAATGTTGTCGTCACGG 258 consensus_4955#0 ACTTACACACATTCTCAAAGGATGTTGATAGCACTAGAAAGTAAGGAAGGTTTGCCCACT 327 consensus_4955#2 ATACAAACACAGCTACAGCTACACACACACATAGTTAGGAGGGGGTTTACCTGAATGATA 419 * consensus_4955#1 TCGTTGTCGTCGTCAAAGCGGTGAGACTAGCGGTTAAAGCAACC--CCGAGCACACAT-- 430 consensus_4955#3 CAGCAAGTGGAACGGGACTGTCAGCGGCGGGAACCGGATCAGAT--CGACCAGCGCCA-- 314 consensus_4955#0 TGCGCTGCGTATTTAGTAGATCGAGTTTAGAGTTTTAGATACAC--ACACATACATGAGA 385 consensus_4955#2 AAGCCCCTGCAAGCGGAAGTAGTACTGCAAGAGACGATGCATACGATCATAGGCAAAAGT 479 * * * consensus_4955#1 ---CCGGAAGCGCGAGTGGTGTGGTGCG-G------TGGAATTTATAGTCCCTAATTGAA 480 consensus_4955#3 ---GCAGGTACGCAGCCGGTTGGGTTGG-G------TGGG--TGGGGNGCANCCACCGGG 362 consensus_4955#0 TTGCTAGGAGCCCGAAAAGAAGGATCAG-GAGAGGATGGAATTTTATGTCCCTAATTGAA 444 consensus_4955#2 GCATCGGAGATGCTTGGAGGGGGAAGGGAGAGGGGATGGAATTTTATGTCCCTAATTGAA 539 * * * * * * *** * * * * consensus_4955#1 GAGGAAAGCAAGCAAAGCATAATAATAAAGCAGGGCTATAGTAGTAGTATATGTATGTGT 540 consensus_4955#3 CAAGCGACCGGCCCAAACGGGGGCATCGGGGCACCCATCAACAGTAGCGCGAAC------ 416 consensus_4955#0 GAGGAAAGCAAGCAAAGCATAATAATAAAGCAGGGCTATAGTAGTAGTATATGTATGTGT 504 consensus_4955#2 GAGGAAAGCAAGCAAAGCATAATAATAAAGCAGGGCTATAGTAGTAGTATATGT------ 593 * * * * * ** * ** * * * ***** consensus_4955#1 CGGAAGTAAGAAACAAAAATCAAAGTTGTGCAAAGGCAAATAAAAATGCAAAACAAAGGT 600 consensus_4955#3 ------------------------------------------------------------ consensus_4955#0 CGGAAGTAAGAAACAAAAATCAAAGTTGTGCAAAGGCAAATAAAAATGCAAAACAAAGGT 564 consensus_4955#2 ------------------------------------------------------------ consensus_4955#1 TAATATC----------------------------------------------------- 607 consensus_4955#3 ------------------------------------------------------------ consensus_4955#0 TAATATCTAATGCGTGTTTGATAAGATATGTACGTAGAGGAAGAAGAAGAAGAAGAAGCA 624 consensus_4955#2 ------------------------------------------------------------ consensus_4955#1 ------------------------------------------------------------ consensus_4955#3 ------------------------------------------------------------ consensus_4955#0 TCAAACACACAACACTCACACACACACATAAACACAAAAAGTAGTTAAGAACGTGTGGTG 684 consensus_4955#2 ------------------------------------------------------------ consensus_4955#1 ------------------------------------------------------------ consensus_4955#3 ------------------------------------------------------------ consensus_4955#0 TCTCTGCATAAAAAGAGAGAGAGAGAGCGAGANAAGGCGTGTGTCCGTGACCTTAGTGAC 744 consensus_4955#2 ------------------------------------------------------------ consensus_4955#1 ------------ consensus_4955#3 ------------ consensus_4955#0 CACCGCACGACG 756 consensus_4955#2 ------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||