cluster # 4959

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Anopheles gambiae
cluster # 4959 cluster # 4959 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4959#0 length = 869 sequences # 3

consensus_4959#1 length = 469 sequences # 1

consensusID : consensus_4959#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 869
fasta sequence

                              [TTTATTAGCTTATCGAATCATCCAATCTTTCCCTTCATTCGTTCTTGACGTGTTGAAATTGATGTAAAACAATGCAAATAAGTGCCAGAAGTGTTTGTGTTTAGTTTCATTAGTTATACACCGT-CCTTCGTATCGCTTGTATGTATATATCCTTACACGCTGCTACATTTAGTCTCTGAGGTCCGGGTCCGGGGACACGCGGGGAATTGTCAGAGGGGGGGTTGACTTGCTGACTAGGTGCGCTAGGTTTATATATAATTTACACTGCGTTGCGTTGCGTTGCGCTAGATCGCTAAAGTGGCGCCTTGCTCAGTGCAGAGGGATCCGAGTCTTCGGAAGCGTGTACGTGGCGGCTGGTGCTGGGTATTGCTAAAAAAAAAAGGGGAATTCATTTCCAATCACACTCGCACACACTGAGGAGGAGTCGTTCCAGCGATGTTTGTTTGATGCGGTTCGCAGCTA-------CTCGCCCACGTTTGCTTGCCACGCAACAGAACTGGGATTTGCTTTGCCGAGCCGGGGGTATGGTCCCCGGTTCGGTTTAAGTTAGACGGAGGAGGGAGAGGGTAAGGGGAATAAGGGAGGCTTTATGGAACGCGATGATGGAGCGATGGTCATTTGGCCGAATTAGCGTTTGCCCAGGCCAAAGTTGTACCGGTTCGGGAGTCGCTTGTTGAAGTCCTCCGCGTCGAAGTAGCGTTTGCCGAGACCGAAGTCGTAGGCGCGCCTCTTGCCCAGCCCAAAGTGGTAACGGTAGGCAGATCCAGCACCATTGCCCGAGGCAGTCCGCTTAGCAGCGTCTTTCTCCTTTTCCGCATCGTAATCGAACTGGCCATCCTTGGTGATCAGATTGGTGTAGTCGTTATCGTTCC]

[+] EMBL CNS096F2             [TTTATTAGCTTATCGAATCATCCAATCTTTCCCTTCATTCGTTCTTGACGTGTTGAAATTGATGTAAAACAATGCAAATAAGTGCCAGAAGTGTTTGTGTTTAGTTTCATTAGTTATACACCGTCCCTTCGTATCGCTTGTATGTATATATCCTTACACGCTGCTACATTTAGTCTCTGAGGTCCGGGTCCGGGGACACGCGGGGAATTGTCAGAGGGGGGGTTGACTTGCTGACTAGGTGCGCTAGGTTTATATATAATTTACACTGCGTTACGTTACGTTACACT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CNS09FSN             [ TTATTAGCTTATCGAATCATCCAATCTTTCCCTTCATTCGTTCTTGACGTGTTGAAATTGATGTAAAACAATGCAAATAAGTGCCAGAAGTGTTTGTGTTTAGTTTCATTAGTTATACACCGT CCTTCGTATCGCTTGTATGTATATATCCTTACACGCTGCTACATTTAGTCTCTGAGGTCCGGGTCCGGGGACACGCGGGGAATTGTCAGAGGGGGGGTTGACTTGCTGACTAGGTGCGCTAGGTTTATATATAATTTACACTGCGTTGCGTTGCGTTGCGCTAGATCGCTAAAGTGGCGCCTTGCTCAGTGCAGAGGGATCCGAGTCTTCGGAAGCGTGTACGTGGCGGCTGGTGCTGGGTATTGCTAAAAAAAAAAGGGGAATTCATTTCCAATCACACTCGCACACACTGAGGAGGAGTCGTTCCAGCGATGTTTGTTTGATGCGGTTCGCAGCTA       CTCGCCCACGTTTGCTTGCCACGCAACAGAACTGGGATTTGCTTTGCCGAGCCGGGGGTATGGTCCCCGGTTCGGTTTAAGTTAGACGGAGGAGGGAGAGGGTAAGGGGAATAAGGGAGGCTTTATGGAACGCGATGATGGAGCGATGGTCATTTGGCCGAATTAGCGTTTGCCCAGGCCAAAGTTGTACCGGTTCGGGAGTCGCTTGTTGAAGTCCTCCGCGTCGAAGTAGCGTTTGCCGAGACCGAAGTCGTAGGCGCGCCTCTTGCCCAGCCCAAAGTGGTAACGGTAGGCAGATCCAGCACCATTGCCCGAGGCAGTCCGCTTAGCAGCGTCTTTCTCCTTTTCCGCATCGTAATCGAACTGGCCATCCTTGGTGATCAGATTGGTGTAGTCGTTATCGTTCC]
[-] EMBL BX611503             [           ATCGAATCATCCAATCTTTCCCTTCATTCGTTCTTGACGTGTTGAAATTGATGTAAACCAATGCAAATAAGTGCAAGAAGTGTTTGTGTTTAGTTTCATTAGTTAAACACCGT CCTTCGTATCGCTTGTATGTATATATCCTTACACGCTGCTACATTTAGTCTCTGAGGTCCGGGTCCGGGGACACACGGGGAATTGTCAGAGGGGGGGTTGACTTGCTGACTAGGTGCGCTAGGTTTATATATAATTTACACTGCGTTGCGTTGCGTTGCGCTAGTCCGCTAGAGTGGCGACTTGCTCAGTGCAGAGGGATCCGAGTCTTCGGAAGCGTGTACGTGGCGGCTGGTGCTGGGTATTGCTAACGGGAGCGGGGGCATTCATTTCCAATCACACTCGCACACACTGAGGAAGAGTCGTTCCAGCGATATTTGTTTGATGCGGTTCGCAACTACTGGGAGCTCACTCACGTTTGCTTGCCACGCAACAGAACTGGG    G TTTGCCGAGCCGGAGGTATGGTCCCCGGTTCGGTTTAAGTTAGAGGGAGGAGGGGCAGGGTAAGGGGAATAAGGGAGGCTTTATGAAACGGGATGATGGCGCGATGGTCATTTGGCCGAATTAGCGTTTGCCCAGGCCAAAGTTGTACCGGTTCGGGAGTCGCTTGTTGAAGTCCTCCGCGTCGAAGTAGCGTTTGCCGAGACCGAAGTCGTAGGCGCGCCTCTTGCCC                                                                                                                                        ]




>consensus_4959#0
TTTATTAGCTTATCGAATCATCCAATCTTTCCCTTCATTCGTTCTTGACGTGTTGAAATT
GATGTAAAACAATGCAAATAAGTGCCAGAAGTGTTTGTGTTTAGTTTCATTAGTTATACA
CCGTCCTTCGTATCGCTTGTATGTATATATCCTTACACGCTGCTACATTTAGTCTCTGAG
GTCCGGGTCCGGGGACACGCGGGGAATTGTCAGAGGGGGGGTTGACTTGCTGACTAGGTG
CGCTAGGTTTATATATAATTTACACTGCGTTGCGTTGCGTTGCGCTAGATCGCTAAAGTG
GCGCCTTGCTCAGTGCAGAGGGATCCGAGTCTTCGGAAGCGTGTACGTGGCGGCTGGTGC
TGGGTATTGCTAAAAAAAAAAGGGGAATTCATTTCCAATCACACTCGCACACACTGAGGA
GGAGTCGTTCCAGCGATGTTTGTTTGATGCGGTTCGCAGCTACTCGCCCACGTTTGCTTG
CCACGCAACAGAACTGGGATTTGCTTTGCCGAGCCGGGGGTATGGTCCCCGGTTCGGTTT
AAGTTAGACGGAGGAGGGAGAGGGTAAGGGGAATAAGGGAGGCTTTATGGAACGCGATGA
TGGAGCGATGGTCATTTGGCCGAATTAGCGTTTGCCCAGGCCAAAGTTGTACCGGTTCGG
GAGTCGCTTGTTGAAGTCCTCCGCGTCGAAGTAGCGTTTGCCGAGACCGAAGTCGTAGGC
GCGCCTCTTGCCCAGCCCAAAGTGGTAACGGTAGGCAGATCCAGCACCATTGCCCGAGGC
AGTCCGCTTAGCAGCGTCTTTCTCCTTTTCCGCATCGTAATCGAACTGGCCATCCTTGGT
GATCAGATTGGTGTAGTCGTTATCGTTCC

consensusID : consensus_4959#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 469
fasta sequence

                              [CTTGTATCGGTTCCGCAATCTACTGGGAGCTCGCCTCACGTTTGCTTGCCACGCAAACAGCATNCTGGGGTTTGCTTTACCGAAGCCGGAGGTATGGTCCCCGGTTCAGGTTTAAGTTAGAGGGTGGAAGGGGAGGNTAAGGGGAATAAGGGAGGCTTTATGAAACGGGATGATGGCGCGCTGGTCATTTGCCCGAATTAGCGTTTGCCCAGGCCAAAGTTGTACCGGTTCGGGAGTCGCTTGTTGAAGTCCTCCGCGTCGAAGTAGCGTTTGCCGAGACCGAAGTCGTAGGCGCGCCTCTTGCACCAGCCCAAAGTGGTAACGGTAGGCAGAACCAGCACCATTGCCCGAGGCAGTCCGCTTAGCAGCGTCTTTCTCCTTTTCCGCATCGTAATCGAACTGGCCATCCCTTGGTGATCAGAATTTGGTGTAGTCGTTATCATTCCAGCTGAGCTGCCTGGGTGCCGAT]

[-] EMBL BX466419             [CTTGTATCGGTTCCGCAATCTACTGGGAGCTCGCCTCACGTTTGCTTGCCACGCAAACAGCATNCTGGGGTTTGCTTTACCGAAGCCGGAGGTATGGTCCCCGGTTCAGGTTTAAGTTAGAGGGTGGAAGGGGAGGNTAAGGGGAATAAGGGAGGCTTTATGAAACGGGATGATGGCGCGCTGGTCATTTGCCCGAATTAGCGTTTGCCCAGGCCAAAGTTGTACCGGTTCGGGAGTCGCTTGTTGAAGTCCTCCGCGTCGAAGTAGCGTTTGCCGAGACCGAAGTCGTAGGCGCGCCTCTTGCACCAGCCCAAAGTGGTAACGGTAGGCAGAACCAGCACCATTGCCCGAGGCAGTCCGCTTAGCAGCGTCTTTCTCCTTTTCCGCATCGTAATCGAACTGGCCATCCCTTGGTGATCAGAATTTGGTGTAGTCGTTATCATTCCAGCTGAGCTGCCTGGGTGCCGAT]




>consensus_4959#1
CTTGTATCGGTTCCGCAATCTACTGGGAGCTCGCCTCACGTTTGCTTGCCACGCAAACAG
CATNCTGGGGTTTGCTTTACCGAAGCCGGAGGTATGGTCCCCGGTTCAGGTTTAAGTTAG
AGGGTGGAAGGGGAGGNTAAGGGGAATAAGGGAGGCTTTATGAAACGGGATGATGGCGCG
CTGGTCATTTGCCCGAATTAGCGTTTGCCCAGGCCAAAGTTGTACCGGTTCGGGAGTCGC
TTGTTGAAGTCCTCCGCGTCGAAGTAGCGTTTGCCGAGACCGAAGTCGTAGGCGCGCCTC
TTGCACCAGCCCAAAGTGGTAACGGTAGGCAGAACCAGCACCATTGCCCGAGGCAGTCCG
CTTAGCAGCGTCTTTCTCCTTTTCCGCATCGTAATCGAACTGGCCATCCCTTGGTGATCA
GAATTTGGTGTAGTCGTTATCATTCCAGCTGAGCTGCCTGGGTGCCGAT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4959#0      TTTATTAGCTTATCGAATCATCCAATCTTTCCCTTCATTCGTTCTTGACGTGTTGAAATT 60
consensus_4959#1      ------------------------------------------------------------
                                                                                  

consensus_4959#0      GATGTAAAACAATGCAAATAAGTGCCAGAAGTGTTTGTGTTTAGTTTCATTAGTTATACA 120
consensus_4959#1      ------------------------------------------------------------
                                                                                  

consensus_4959#0      CCGTCCTTCGTATCGCTTGTATGTATATATCCTTACACGCTGCTACATTTAGTCTCTGAG 180
consensus_4959#1      ------------------------------------------------------------
                                                                                  

consensus_4959#0      GTCCGGGTCCGGGGACACGCGGGGAATTGTCAGAGGGGGGGTTGACTTGCTGACTAGGTG 240
consensus_4959#1      ------------------------------------------------------------
                                                                                  

consensus_4959#0      CGCTAGGTTTATATATAATTTACACTGCGTTGCGTTGCGTTGCGCTAGATCGCTAAAGTG 300
consensus_4959#1      ------------------------------------------------------------
                                                                                  

consensus_4959#0      GCGCCTTGCTCAGTGCAGAGGGATCCGAGTCTTCGGAAGCGTGTACGTGGCGGCTGGTGC 360
consensus_4959#1      ------------------------------------------------------------
                                                                                  

consensus_4959#0      TGGGTATTGCTAAAAAAAAAAGGGGAATTCATTTCCAATCACACTCGCACACACTGAGGA 420
consensus_4959#1      ------------------------------------------------------------
                                                                                  

consensus_4959#0      GGAGTCGTTCCAGCGATGTTTGTTTGATGCGGTTCGCAGCTA-CTCGCC-CACGTTTGCT 478
consensus_4959#1      ------------CTTGTATCGGTTC--CGCAATCTACTGGGAGCTCGCCTCACGTTTGCT 46
                                      * *  ***    **  *   * *  * ****** **********

consensus_4959#0      TGCCACGCAA-CAGAA--CTGGGATTTGCTTTGCCGA-GCCGGGGGTATGGTCCCCGGTT 534
consensus_4959#1      TGCCACGCAAACAGCATNCTGGGGTTTGCTTTACCGAAGCCGGAGGTATGGTCCCCGGTT 106
                      ********** *** *  ***** ******** **** ***** ****************

consensus_4959#0      C-GGTTTAAGTTAGACGGAGGAGGGAGAGGGTAAGGGGAATAAGGGAGGCTTTATGGAAC 593
consensus_4959#1      CAGGTTTAAGTTAGAGGGTGGAAGGGGAGGNTAAGGGGAATAAGGGAGGCTTTATGAAAC 166
                      * ************* ** *** ** **** ************************* ***

consensus_4959#0      GCGATGATGGAGCGATGGTCATTTGGCCGAATTAGCGTTTGCCCAGGCCAAAGTTGTACC 653
consensus_4959#1      GGGATGATGGCGCGCTGGTCATTTGCCCGAATTAGCGTTTGCCCAGGCCAAAGTTGTACC 226
                      * ******** *** ********** **********************************

consensus_4959#0      GGTTCGGGAGTCGCTTGTTGAAGTCCTCCGCGTCGAAGTAGCGTTTGCCGAGACCGAAGT 713
consensus_4959#1      GGTTCGGGAGTCGCTTGTTGAAGTCCTCCGCGTCGAAGTAGCGTTTGCCGAGACCGAAGT 286
                      ************************************************************

consensus_4959#0      CGTAGGCGCGCCTCTTGC-CCAGCCCAAAGTGGTAACGGTAGGCAGATCCAGCACCATTG 772
consensus_4959#1      CGTAGGCGCGCCTCTTGCACCAGCCCAAAGTGGTAACGGTAGGCAGAACCAGCACCATTG 346
                      ****************** **************************** ************

consensus_4959#0      CCCGAGGCAGTCCGCTTAGCAGCGTCTTTCTCCTTTTCCGCATCGTAATCGAACTGGCCA 832
consensus_4959#1      CCCGAGGCAGTCCGCTTAGCAGCGTCTTTCTCCTTTTCCGCATCGTAATCGAACTGGCCA 406
                      ************************************************************

consensus_4959#0      TCC-TTGGTGATCAGA--TTGGTGTAGTCGTTATCGTTCC-------------------- 869
consensus_4959#1      TCCCTTGGTGATCAGAATTTGGTGTAGTCGTTATCATTCCAGCTGAGCTGCCTGGGTGCC 466
                      *** ************  ***************** ****                    

consensus_4959#0      ---
consensus_4959#1      GAT 469