These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4963#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 999 fasta sequence [CGAGGTTAAACAAACTAAACGCGCTCCGCTCGGTGCTGGAATNNAAACAACTTCAACACTCGAAAAAAGGTCATTTAAATAAAGGAAATCGATTGCTTTTAAAGGACAATCACAAAGCTTTCTGCGAAAAGCTTCGCCCTTACATCCACTGCCAGGCGAAACCCCTTCAAATACTACTATTGCAAAAAGATGGTACGCCCCACAACTTTACACTCCCATACTACGACCCAGGTAGAGTGTGTGCGAGGTGCAGTACAAAATAGGGNGTGCTCAATNTATGAAGTGACTCGGTACCTGTTCTACATACGGCCAGGACAATTGNGTGAAACACTCGTTACNGCACAGAGAATGAGACNTGTGTNAGCGATTGCCCGCAAATGCCACAGACAACGGCAACTGGAAGATGCTGGGACACATGACACATTAATCTGTGAACCAACCTGGGANCGGTCAGACGNGATGTAGCANNCGATACTAGTGGCCCAANCNGCGACTGNGCCAACAAAGCATNAAAGCAAAACAAGCGTGTAACCCTTGACCCTATGTAGCATCGTCCNGNACCCCGANACNGACTCCGTCATCCGTGGCGGGCCTGNCCGAAATACAGACNCACANGAAAGACTACTCNCCGNACAGACCCACTACTAACGCACACGCANATAATACGANCCTTGGCTTTANGGAAAGGCGGGAAGCCACGAGCGCATAANGCCACGCCCGNNACGAGCANAGCNGGCACCCCGGNACAAACACCCAGCACACAACCACCCACCNCAAGCNATTNGGGANCNGANAGCAGNCCCCACGAAANCCCAACAATANAAGCTNAACTCACGCCAAANCTACCCCACCCNCACCCCCAACNCCCCGNNNGGCAGCACTTCNCACCGCGCATCCCCGNCACACACCGCCAAACCNACGANTAACCTAANAAGNGCCGATGGCACATACCCCACACACGCATCACNAACNCCNCACNCAGCCACANCCCCCCCCCNN] [+] EMBL AL929925 [CGAGGTTAAACAAACTAAACGCGCTCCGCTCGGTGCTGGAATNNAAACAACTTCAACACTCGAAAAAAGGTCATTTAAATAAAGGAAATCGATTGCTTTTAAAGGACAATCACAAAGCTTTCTGCGAAAAGCTTCGCCCTTACATCCACTGCCAGGCGAAACCCCTTCAAATACTACTATTGCAAAAAGATGGTACGCCCCACAACTTTACACTCCCATACTACGACCCAGGTAGAGTGTGTGCGAGGTGCAGTACAAAATAGGGNGTGCTCAATNTATGAAGTGACTCGGTACCTGTTCTACATACGGCCAGGACAATTGNGTGAAACACTCGTTACNGCACAGAGAATGAGACNTGTGTNAGCGATTGCCCGCAAATGCCACAGACAACGGCAACTGGAAGATGCTGGGACACATGACACATTAATCTGTGAACCAACCTGGGANCGGTCAGACGNGATGTAGCANNCGATACTAGTGGCCCAANCNGCGACTGNGCCAACAAAGCATNAAAGCAAAACAAGCGTGTAACCCTTGACCCTATGTAGCATCGTCCNGNACCCCGANACNGACTCCGTCATCCGTGGCGGGCCTGNCCGAAATACAGACNCACANGAAAGACTACTCNCCGNACAGACCCACTACTAACGCACACGCANATAATACGANCCTTGGCTTTANGGAAAGGCGGGAAGCCACGAGCGCATAANGCCACGCCCGNNACGAGCANAGCNGGCACCCCGGNACAAACACCCAGCACACAACCACCCACCNCAAGCNATTNGGGANCNGANAGCAGNCCCCACGAAANCCCAACAATANAAGCTNAACTCACGCCAAANCTACCCCACCCNCACCCCCAACNCCCCGNNNGGCAGCACTTCNCACCGCGCATCCCCGNCACACACCGCCAAACCNACGANTAACCTAANAAGNGCCGATGGCACATACCCCACACACGCATCACNAACNCCNCACNCAGCCACANCCCCCCCCCNN] consensusID : consensus_4963#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 747 fasta sequence [GTTCGGTGCCGGAATAAAACAAGTTCAACACTCGAAAAAAGGTCATTTAAATAAAGGAAATCGATTGCTTTTAAAGGACAATCACAAAGCGTTCTGCGAAAAGCTTCGCCCTTACATCCACTGCCGGGCGAAAACTCTTCAAATCTCTTTACAAAAAGATGGTCGCCCCAAACTTTCACTCCCATCTCGCCCAGGTAGAGGTGTGCGAGGTGCAGTACAACATACGCGTGCTCAAGATGAAGGACTCGGTCCTGTTCTACATCGGCCAGAACAAGGCGGAAACGTTCGACGAGATGGCGGTAGCGATGCCGAACGCAAACAACGGCACGGAAGTGCTGGGCACGACCATTATCGGCCCACCGGACGGTAGCGGTGCGCAGGATCTGGCCCAGCGGCTGGCCAAAAGGCTCAAGAAACAGGTGTACCTGAGTCTTGGCTCGTCCGTCCCGAACGATCGTATTGTGCGGCCGTCGATCGAGAAGAAGATATTCGACGACATTAAAAACAATATCGAATGCTTTTGAAGCAGCGCAGGGATAGCAGCGTAGGAACCGCACGGAAACTGAATAACAGAGATGGAGAGAGCCAGAGCCAGATAATACTACAACTCCATTACCTCAAGGGAGATGAGGGATCGCTTTTTATCTTATACTAGGGCGCGTGATTTTTTACATATATGCTTGCTAAAGATGATTGATCGGATTATTATGCTGTGCCGTATAATATTTTTTGAAAATAAATACAATC] [+] EMBL BX623115 [GTTCGGTGCCGGAATAAAACAAGTTCAACACTCGAAAAAAGGTCATTTAAATAAAGGAAATCGATTGCTTTTAAAGGACAATCACAAAGCGTTCTGCGAAAAGCTTCGCCCTTACATCCACTGCCGGGCGAAAACTCTTCAAATCTCTTTACAAAAAGATGGTCGCCCCAAACTTTCACTCCCATCTCGCCCAGGTAGAGGTGTGCGAGGTGCAGTACAACATACGCGTGCTCAAGATGAAGGACTCGGTCCTGTTCTACATCGGCCAGAACAAGGCGGAAACGTTCGACGAGATGGCGGTAGCGATGCCGAACGCAAACAACGGCACGGAAGTGCTGGGCACGACCATTATCGGCCCACCGGACGGTAGCGGTGCGCAGGATCTGGCCCAGCGGCTGGCCAAAAGGCTCAAGAAACAGGTGTACCTGAGTCTTGGCTCGTCCGTCCCGAACGATCGTATTGTGCGGCCGTCGATCGAGAAGAAGATATTCGACGACATTAAAAACAATATCGAATGCTTTTGAAGCAGCGCAGGGATAGCAGCGTAGGAACCGCACGGAAACTGAATAACAGAGATGGAGAGAGCCAGAGCCAGATAATACTACAACTCCATTACCTCAAGGGAGATGAGGGATCGCTTTTTATCTTATACTAGGGCGCGTGATTTTTTACATATATGCTTGCTAAAGATGATTGATCGGATTATTATGCTGTGCCGTATAATATTTTTTGAAAATAAATACAATC] [+] EMBL AGA282088 [ ACCCTTCAAATCTCTTTACACAAAGATGGTCGCCCCAAACTTTCACTCCCATCTCGCCCAGGTAGAGGTGTGCGAGGTGCAGTACAACATACGCGTGCTCAAGATGAAGGACTCGGTCCTGTTCTACATCGGCCAGGACAAGGCGGAAACGTTCGACGAGATGGCGGTAGCGATGCCGAACGCAAACAACGGCACGGAAGTGCTGGGCACGACCATTATCGGCCCACCGGACGGTAGCGGTGCGCAGGATCTGGCCCAGCGGCTGGCCAAAAGGCTCAAGAAACAGGTGTACCTGAGTCTTGGCTCGTCCGTCCCGAACGATCGTATTGTGCGGCCGTCGATCGAGAAGAAGATATTCGACGACATTAAAAACAATATCGAATGCTTTTGAAGCAGCGCAGGGATAGCAGCGTAGGAACCGCACGGAAACTGAATA ] consensusID : consensus_4963#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 175 fasta sequence [AGGACAAGGCGGAAACGTACGACGAGAGGGCGGCAGCGAAGCCGAACGCAAACAACGGCACGGAAGTGCGGGGCACGACCATTATCGGCCCACCGGACGGGAGCGGAGCGCAGGAACTGGCCCAGCGGCGGGCCAAAAGGCGCAAGAAACAGGGGGACCTGAGTCCTGGCCCGGC] [+] EMBL BX611344 [AGGACAAGGCGGAAACGTACGACGAGAGGGCGGCAGCGAAGCCGAACGCAAACAACGGCACGGAAGTGCGGGGCACGACCATTATCGGCCCACCGGACGGGAGCGGAGCGCAGGAACTGGCCCAGCGGCGGGCCAAAAGGCGCAAGAAACAGGGGGACCTGAGTCCTGGCCCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4963#1 ---------------------------GTTCGGTGCCGGAATAAAA-CAAGTTCAACACT 32 consensus_4963#2 ------------------------------------------------------------ consensus_4963#0 CGAGGTTAAACAAACTAAACGCGCTCCGCTCGGTGCTGGAATNNAAACAACTTCAACACT 60 consensus_4963#1 CGAAAAAAGGTCATTTAAATAAAGGAAATCGATTGCTTTTAAAGGACAATCACAAAGCGT 92 consensus_4963#2 ------------------------------------------------------------ consensus_4963#0 CGAAAAAAGGTCATTTAAATAAAGGAAATCGATTGCTTTTAAAGGACAATCACAAAGCTT 120 consensus_4963#1 TCTGCGAAAAGCTTCGCCCTTACATCCACTGCCGGGCGAAAACTCTTCAAATCTCTTTA- 151 consensus_4963#2 ------------------------------------------------------------ consensus_4963#0 TCTGCGAAAAGCTTCGCCCTTACATCCACTGCCAGGCGAAACCCCTTCAAATACTACTAT 180 consensus_4963#1 --CAAAAAGATGGT---CGCCCCAAACTTTCACTCCCATCTCGC---CCAGGTAGAG-GT 202 consensus_4963#2 ------------------------------------------------------------ consensus_4963#0 TGCAAAAAGATGGTACGCCCCACAACTTTACACTCCCATACTACGACCCAGGTAGAGTGT 240 consensus_4963#1 GTGCGAGGTGCAGTACAACATACG-CGTGCTCAAGATG---AAGGACTCGGT-CCTGTTC 257 consensus_4963#2 ------------------------------------------------------------ consensus_4963#0 GTGCGAGGTGCAGTACAAAATAGGGNGTGCTCAATNTATGAAGTGACTCGGTACCTGTTC 300 consensus_4963#1 TACAT-CGGCCAGAACAA--GGCGGAAACGTTCGACGAGATGGCGGTAGCGATGCCGAAC 314 consensus_4963#2 -----------AGGACAA--GGCGGAAACGTACGACGAGAGGGCGGCAGCGAAGCCGAAC 47 consensus_4963#0 TACATACGGCCAGGACAATTGNGTGAAACACTCGTTACNGCACAGAGAATGA-GACNTGT 359 ** **** * ***** ** * * ** * * consensus_4963#1 GCAAACAACGGCACGGAAGTGCTGGGCACGACCATTATCGGCCCAC-------CGGACGG 367 consensus_4963#2 GCAAACAACGGCACGGAAGTGCGGGGCACGACCATTATCGGCCCAC-------CGGACGG 100 consensus_4963#0 GTNAGCGATTGCCCGCAAATGCCACAGACAACGGCAACTGGAAGATGCTGGGACACATGA 419 * * * * ** ** ** *** ** ** * ** * * * * consensus_4963#1 TAGCGGTGCGCAGGATCTGGCCCAGCGGCTGGCCAA-AAGGCTCAAGAAACAG----GTG 422 consensus_4963#2 GAGCGGAGCGCAGGAACTGGCCCAGCGGCGGGCCAA-AAGGCGCAAGAAACAG----GGG 155 consensus_4963#0 CACATTAATCTGTGAACCAACCTGGGANCGGTCAGACGNGATGTAGCANNCGATACTAGT 479 * ** * ** * * * * * * * * * consensus_4963#1 TACCTGAGTCTTGGCTCGTCCGTCCC-GAACGATCGTATTGTGCGGCCGTCGATCGAGAA 481 consensus_4963#2 GACCTGAGTCCTGGCCCGGC---------------------------------------- 175 consensus_4963#0 GGCCCAANCNGCGACTGNGCCAACAAAGCATNAAAGCAAAACAAGCGTGTAACCCTTGAC 539 ** * * * * consensus_4963#1 GAAGATATTCGACGACATTAAAAACAATATCGAATGCTTTTGAAGCAGCGCAGGGATAGC 541 consensus_4963#2 ------------------------------------------------------------ consensus_4963#0 CCTATGTAGCATCGTCCNGNACCCCGANACNGACTCCGTCATCCGTGGCGGGCCTGNCCG 599 consensus_4963#1 AGCGTAGGAACCGCACGGAA-ACTGAATAACAGAGATGGAGAGAGCCAGAGCCAGATAAT 600 consensus_4963#2 ------------------------------------------------------------ consensus_4963#0 AAATACAGACNCACANGAAAGACTACTCNCCGNACAGACCCACTACTAACGCACACGCAN 659 consensus_4963#1 ACTACAACTCCATTACCTCAAGGGAGATGAGGGATCGCTTTTTATCTTATACTAGGGCGC 660 consensus_4963#2 ------------------------------------------------------------ consensus_4963#0 ATAATACGANCCTTGGCTTTANGGAAAGGCGGGAAGCCACGAGCGCATAANGCCACGCCC 719 consensus_4963#1 GTGATTTTTTACATATATGCTTGCTAAAGATGATTGATCGGATTATTATGCTGTGCCGTA 720 consensus_4963#2 ------------------------------------------------------------ consensus_4963#0 GNNACGAGCANAGCNGGCACCCCGGNACAAACACCCAGCACACAACCACCCACCNCAAGC 779 consensus_4963#1 TAATATTTTTTGAAAATAAATACAATC--------------------------------- 747 consensus_4963#2 ------------------------------------------------------------ consensus_4963#0 NATTNGGGANCNGANAGCAGNCCCCACGAAANCCCAACAATANAAGCTNAACTCACGCCA 839 consensus_4963#1 ------------------------------------------------------------ consensus_4963#2 ------------------------------------------------------------ consensus_4963#0 AANCTACCCCACCCNCACCCCCAACNCCCCGNNNGGCAGCACTTCNCACCGCGCATCCCC 899 consensus_4963#1 ------------------------------------------------------------ consensus_4963#2 ------------------------------------------------------------ consensus_4963#0 GNCACACACCGCCAAACCNACGANTAACCTAANAAGNGCCGATGGCACATACCCCACACA 959 consensus_4963#1 ---------------------------------------- consensus_4963#2 ---------------------------------------- consensus_4963#0 CGCATCACNAACNCCNCACNCAGCCACANCCCCCCCCCNN 999 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||