These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4969#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 643 fasta sequence [GTGTGATATTGTTTGTAGCAGTAAAAACACAGCAAAAGTAATAGAAAAAGCGCCAGTTTTGATTGTTTTTTTGTTACACCTGTCGAGCCAACTGATTTTTCAACCATGAACGCACCACCGACCTTCGAATCTTTCCTTCTGTACGAAGGAGAGAAGAAAATTATCAAAGAACTGGACATGAAAGTTCCAAACGCTGCCATATTCACCGTCAACAAGGAAGATCACACGCTAGGAAACATGATTCGCAACCAGCTGCTGAAGGATCCGAACGTGCTGTTCGCTGGCTACAAACTTCCCCACCCGCTCGAGCACAAGTTCGTACTGCGCATCCAGACGACGTCGGAATATTCCCCTCACGAAGCGTTCATGAACGCCATCACCGATCTGCTGTCCGAGCTGTCCCTGTTCGAGGAACGGTTCCGGGAGGCGATGAAGGAAAAGAAGGAGGGTGGCGATTAGGATTATTTCGGATACACCAAATGGCGGGAGGGGAGAGTAGGTGAGCAGAGGGAC--AGAGAGAGAGGGTTCACGGTCCGTTTTTACCCTCTTGGAATGTC---GTGCGAACAGGCAGGCTTTTTAATGTTTAAGAATGTGTGACCTATATTGGATTCAGTATAAATATTGAATTAATCCTGAAAAAAAA] [+] EMBL BX621663 [GTGTGATATTGTTTGTAGCAGTAAAAACACAGCAAAAGTAATAGAAAAAGCGCCAGTTTTGATTGTTTTTTTGTTACACCTGTCGAGCCAACTGATTTTTCAACCATGAACGCACCACCGACCTTCGAATCTTTCCTTCTGTACGAAGGAGAGAAGAAAATTATCAAAGAACTGGACATGAAAGTTCCAAACGCTGCCATATTCACCGTCAACAAGGAAGATCACACGCTAGGAAACATGATTCGCAACCAGCTGCTGAAGGATCCGAACGTGCTGTTCGCTGGCTACAAACTTCCCCACCCGCTCGAGCACAAGTTCGTACTGCGCATCCAGACGACGTCGGAATATTCCCCTCACGAAGCGTTCATGAACGCCATCACCGATCTGCTGTCCGAGCTGTCCCTGTTCGAGGAACGGTTCCGGGAGGCGATGAAGGAAAAGAAGGAGGGTGGCGATTAGGATTATTTCGGATACACCAAATGGCGGGAGGGGAGAGTAGGTGAGCAGAGGGAC AGAGAGAGAGGGTTCACGGTCCGTTTTTACCCTCTTGGAATGTC GTGCGAACAGGCAGGCTTTTTAATGTTTAAGAATGTGTGACCTATATT ] [+] EMBL AGA282114 [ AATCTTTCCTTCTGTACCCCCGAGAGAAGAAAATTAACAAAGAACTGGACATGAAAGTTCCAAACGCTGCCATATTCACCGTCAACAAGGAAGATCACACGCTGGGAAACATGATTCGCAACCAGCTGCTGAAGGATCCGAACGTGCTGTTCGCTGGCTACAAACTTCCCCACCCGCTCGAGCACAAGTTCGTACTGCGCATCCAGACGACGTCGGAATATTCCCCTCACGAAGCGTTCATGAACGCCATCACCGATCTGCTGTCCGAGCTGTCCCTGTTCGAGGAACGGTTCCGGG ] [-] EMBL AGA284391 [ TGTTCGAGGAACGGTTCCGGGAGGCGATGAAGGAAAAGAAGGAGGGTGGTGATTAGGATTATTTCGGATACACCAAATGGCGGGAGGGGAGAGTAGGTGAGCAGCGGGACAGAGAGAGAGAGGGTTCACGGTCCGTTTTTACCCTCTTGGAATGTCGGTGTGCGAACAGGCAGGCTTTTTAATGTTTAAGAATGTGTGACCTATATTGGATTCAGTATAAATATTGAATTAATCCTGAAAAAAAA] consensusID : consensus_4969#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 337 fasta sequence [GAATCTTTCCTTCTGTACGAAGGAGAGAAGAAAATTATCAAAGAACTGGACATGAAAGTTCCAAACGCTGCCATATTCACCGTCAACAAGGAAGATCACACGCTGGGAAACATGATTCGCAAGTGAGTATTTCATTGAGCGGCTTTTTCGGGCCATTGATGAACCATGCCACGGGATTTTGATTTACATGCGCACACCTTCTTTTCTTTCTCGCGCCCATCCTGTATGGCTTCTCCTCCTCTTCATCCTTCCGCGCCCCCTGCAGCCAGCTGCTGAAGGATCCGAACGTGCTGTTCGCTGGCTACAAACTTCCCCACCCGCTCGAGCACAAGTTCGT] [+] EMBL AGA285697 [GAATCTTTCCTTCTGTACGAAGGAGAGAAGAAAATTATCAAAGAACTGGACATGAAAGTTCCAAACGCTGCCATATTCACCGTCAACAAGGAAGATCACACGCTGGGAAACATGATTCGCAAGTGAGTATTTCATTGAGCGGCTTTTTCGGGCCATTGATGAACCATGCCACGGGATTTTGATTTACATGCGCACACCTTCTTTTCTTTCTCGCGCCCATCCTGTATGGCTTCTCCTCCTCTTCATCCTTCCGCGCCCCCTGCAGCCAGCTGCTGAAGGATCCGAACGTGCTGTTCGCTGGCTACAAACTTCCCCACCCGCTCGAGCACAAGTTCGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4969#0 GTGTGATATTGTTTGTAGCAGTAAAAACACAGCAAAAGTAATAGAAAAAGCGCCAGTTTT 60 consensus_4969#1 ------------------------------------------------------------ consensus_4969#0 GATTGTTTTTTTGTTACACCTGTCGAGCCAACTGATTTTTCAACCATGAACGCACCACCG 120 consensus_4969#1 ------------------------------------------------------------ consensus_4969#0 ACCTTCGAATCTTTCCTTCTGTACGAAGGAGAGAAGAAAATTATCAAAGAACTGGACATG 180 consensus_4969#1 ------GAATCTTTCCTTCTGTACGAAGGAGAGAAGAAAATTATCAAAGAACTGGACATG 54 ****************************************************** consensus_4969#0 AAAGTTCCAAACGCTGCCATATTCACCGTCAACAAGGAAGATCACACGCTAGGAAACATG 240 consensus_4969#1 AAAGTTCCAAACGCTGCCATATTCACCGTCAACAAGGAAGATCACACGCTGGGAAACATG 114 ************************************************** ********* consensus_4969#0 ATTCGCAACCAGCTGCTGAAGGATCCGAACGTGCTGTTCGCTGGCTACAAACTTCCCCAC 300 consensus_4969#1 ATTCGCAAGTGAGTATTTCA----TTGAGCGGCTTTTTCG--GGCCATTGATGAACCATG 168 ******** * * * ** ** * **** *** * * ** consensus_4969#0 CCGCTCGAGCACAAGTTCGTACTGCGCATCCAGACGACGTCGGAATATTCCCCTCACGAA 360 consensus_4969#1 CCACGGGATTTTGA-TTTACA-TGCGCACACCTTCTTTTCTTTCTCGCGCCCATCCTGTA 226 ** * ** * ** * ****** * * *** ** * * consensus_4969#0 GCGTTCATGAACGCCATCACCGATCTGCTGTCCGAGCTGTCCCTGTTCGAGGAACGGTTC 420 consensus_4969#1 TGGCTTCTCCTCCTCTTCATCCTTCCGCGCCCC---CTGCAGCCAGCTGCTGAAGGATCC 283 * * * * * *** * ** ** ** *** * * *** * * * consensus_4969#0 CGGGAGGCGATGAAGGAAAAGAAGGAGGGTGGCGATTAGGATTATTTCGGATACACCAAA 480 consensus_4969#1 --GAACGTGCTGTTCGCTGGCTACAAACTTCCCCACCCGCTCGAGCACAAGTTCGT---- 337 * * * * ** * * * * * * * * * * * consensus_4969#0 TGGCGGGAGGGGAGAGTAGGTGAGCAGAGGGACAGAGAGAGAGGGTTCACGGTCCGTTTT 540 consensus_4969#1 ------------------------------------------------------------ consensus_4969#0 TACCCTCTTGGAATGTCGTGCGAACAGGCAGGCTTTTTAATGTTTAAGAATGTGTGACCT 600 consensus_4969#1 ------------------------------------------------------------ consensus_4969#0 ATATTGGATTCAGTATAAATATTGAATTAATCCTGAAAAAAAA 643 consensus_4969#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||