Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 4971 cluster # 4971       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_4971#0 length = 706 sequences # 2  
consensus_4971#1 length = 665 sequences # 1  
consensus_4971#2 length = 543 sequences # 1  

consensusID : consensus_4971#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 706
fasta sequence
                              [CCGGGGCTTTCCGCTAGTTCGTGCGTTCAGTGCGTTTTTTACAAACCTTGCCATTGTCTAATTGTGATTAAACGTTTTGGGAGGTTTTTCCAATAAAAATCTGACCTAATTCATTACGAACCGTGTGTGCAAACGTGTATTTAGCTGCATCAAAAACAAACTGCCTCGGGCCACAATCCAAGCACCCATTGCCCCAGTTGGGACTACAGCAGTCGTGCGTCTCTTTGCAGCGTTTTCTTGCAGCAACACAAAGGAAAAGGAACTTCACAGGTGTGACTTCTCCAACTGATCTGTGTGGCTTCCGCAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAAGCACAGGCACACATACACCATACCCGAGCAACATTGGTGCTGCTGCTACTGCTGCCGTTGGTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCCATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGGCATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGTCGCTTCTTCCACCTCGCTCGCTTTTCGCCCGTGAACAAAAGGATGGAGTTTGATTCGGGTTCCGCTGAGCTGAACCAACGAATAGCCGAATGGTTGCGCTGGGATAAGAATGAAAAGACTTTGGAGGAGG]

[+] EMBL BM606167             [CCGGGGCTTTCCGCTAGTTCGTGCGTTCAGTGCGTTTTTTACAAACCTTGCCATTGTCTAATTGTGATTAAACGTTTTGGGAGGTTTTTCCAATAAAAATCTGACCTAATTCATTACGAACCGTGTGTGCAAACGTGTATTTAGCTGCATCAAAAACAAACTGCCTCGGGCCACAATCCAAGCACCCATTGCCCCAGTTGGGACTACAGCAGTCGTGCGTCTCTTTGCAGCGTTTTCTTGCAGCAACACAAAGGAAAAGGAACTTCACAGGTGTGACTTCTCCAACTGATCTGTGTGGCTTCCGCAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAAGCACAGGCACACATACACCATACCCGAGCAACATTGGTGCTGCTGCTACTGCTGCCGTTGGTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCCATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGGCATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGTCGCTTCTTCCACCTCGCTCGCTTTTCGCCCGTGAACAAAAGGATGGAGTTTGATTCGGGTTCCGCTGAGCTGAACCAACGAATAGCCGAATGGTTGCGCTGGGATAAGAATGAAAAGACTTTGGAGGAGG]
[+] EMBL AGA282128            [                                                                                                                                                                                                                        GCGTCTCTTTGCAGCGTTTTCTTGCAGCAACACAAAGGAAAAGGAACTTCACAGGTGTGACTCCACCAACTGATCTGTGTGGCTTCCGCAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAAGCACAGGCACACATACACCATACCCGAGCAACATTGGTG         CTGCTGCCGTTGGTCAGACCGAGCCCGAAATTTGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCCATCGCACGATTCACGAAGCGGACGTGAACGAGCAACCCCCCGGGGACCATAATCCATCGGCATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGTCGCTTCTTCCACCGCGCTCGCTTTTCGCCCGTGAACAAAAGGATG                                                                                     ]


>consensus_4971#0 CCGGGGCTTTCCGCTAGTTCGTGCGTTCAGTGCGTTTTTTACAAACCTTGCCATTGTCTA ATTGTGATTAAACGTTTTGGGAGGTTTTTCCAATAAAAATCTGACCTAATTCATTACGAA CCGTGTGTGCAAACGTGTATTTAGCTGCATCAAAAACAAACTGCCTCGGGCCACAATCCA AGCACCCATTGCCCCAGTTGGGACTACAGCAGTCGTGCGTCTCTTTGCAGCGTTTTCTTG CAGCAACACAAAGGAAAAGGAACTTCACAGGTGTGACTTCTCCAACTGATCTGTGTGGCT TCCGCAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAAGCA CAGGCACACATACACCATACCCGAGCAACATTGGTGCTGCTGCTACTGCTGCCGTTGGTC AGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCCATC GCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGGCAT ATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGTCGCTTCTTCCACCTCGCTCGCTTT TCGCCCGTGAACAAAAGGATGGAGTTTGATTCGGGTTCCGCTGAGCTGAACCAACGAATA GCCGAATGGTTGCGCTGGGATAAGAATGAAAAGACTTTGGAGGAGG



consensusID : consensus_4971#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 665
fasta sequence
                              [CCGCATTTGCTCACGATTTTGATTGCGGCAGATTGCGTTGTGAATGGTCATTTAACGACGGCAGGCAAAAGCATTAAAACGAGCCTGGGTGGGAGTCAATGATTCGTTGAGTTTTTTCCGCAAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAAGCACAGGCACACATACACCATACCCGAGCGACACTGGTGCTGCTGCTGCCGTTGGTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCCATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGGCATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGTCGCTTCTTCCACCTCGCTCGCTTTTCGCCCGTGAACAAAAGGATGGAGTTTGATTCGGGTTCCGCTGAGCTGAACCAACGAATAGCCGAATGGTTGCGCTGGGATAAGAATGAAAAGACTTTGGAGGAGGTACGCGAGCTGGCACGGCGCAGTGAGTGGAAGGTGCTCGGGGACCGGTTGCTGCAGCGGCTCACCTTCGGCACGGCCGGGCTGCGCGGCGTGATGCAGGCCGGGTTTAATGCGATGAACGATCTGGTGGTCATACAGTCGGCGCAAGG]

[+] EMBL BM624217             [CCGCATTTGCTCACGATTTTGATTGCGGCAGATTGCGTTGTGAATGGTCATTTAACGACGGCAGGCAAAAGCATTAAAACGAGCCTGGGTGGGAGTCAATGATTCGTTGAGTTTTTTCCGCAAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAAGCACAGGCACACATACACCATACCCGAGCGACACTGGTGCTGCTGCTGCCGTTGGTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCCATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGGCATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGTCGCTTCTTCCACCTCGCTCGCTTTTCGCCCGTGAACAAAAGGATGGAGTTTGATTCGGGTTCCGCTGAGCTGAACCAACGAATAGCCGAATGGTTGCGCTGGGATAAGAATGAAAAGACTTTGGAGGAGGTACGCGAGCTGGCACGGCGCAGTGAGTGGAAGGTGCTCGGGGACCGGTTGCTGCAGCGGCTCACCTTCGGCACGGCCGGGCTGCGCGGCGTGATGCAGGCCGGGTTTAATGCGATGAACGATCTGGTGGTCATACAGTCGGCGCAAGG]


>consensus_4971#1 CCGCATTTGCTCACGATTTTGATTGCGGCAGATTGCGTTGTGAATGGTCATTTAACGACG GCAGGCAAAAGCATTAAAACGAGCCTGGGTGGGAGTCAATGATTCGTTGAGTTTTTTCCG CAAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAAGCACAG GCACACATACACCATACCCGAGCGACACTGGTGCTGCTGCTGCCGTTGGTCAGACCGAGC CCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCCATCGCACGATTC ACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGGCATATCAAACTT GCTGTGAACGCGGCGAAACCGCACTGTCGCTTCTTCCACCTCGCTCGCTTTTCGCCCGTG AACAAAAGGATGGAGTTTGATTCGGGTTCCGCTGAGCTGAACCAACGAATAGCCGAATGG TTGCGCTGGGATAAGAATGAAAAGACTTTGGAGGAGGTACGCGAGCTGGCACGGCGCAGT GAGTGGAAGGTGCTCGGGGACCGGTTGCTGCAGCGGCTCACCTTCGGCACGGCCGGGCTG CGCGGCGTGATGCAGGCCGGGTTTAATGCGATGAACGATCTGGTGGTCATACAGTCGGCG CAAGG



consensusID : consensus_4971#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 543
fasta sequence
                              [CCGCCCACGCGTCCGCGTGCGTTCAGTGCGTTTTTTACAAACCTTGCCATTGTCTAATTGTGATTAAACGTTTTGGGAGGTTTTTCCAATAAAAATCTGACCTAATTCATTACGAACCGTGTGTGCAAACGTGTATTTAGCTGCATCAAAAACAAACTGCCTCGGGCCACAATCCAAGCACCCATTGCCCCAGTTGGGACTACAGCAGTCGTGCGTCTCTTTGCAGCGTTTTCTTGCAGCAACACAAAGGAAAAGGAACTTCACAGTTCCGCAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAAGCACAGGCACACATACACCATACCCGAGCAACATTGGTGCTGCTGCTACTGCTGCCGTTGGTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCCATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGGCATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGT]

[+] EMBL BM617735             [CCGCCCACGCGTCCGCGTGCGTTCAGTGCGTTTTTTACAAACCTTGCCATTGTCTAATTGTGATTAAACGTTTTGGGAGGTTTTTCCAATAAAAATCTGACCTAATTCATTACGAACCGTGTGTGCAAACGTGTATTTAGCTGCATCAAAAACAAACTGCCTCGGGCCACAATCCAAGCACCCATTGCCCCAGTTGGGACTACAGCAGTCGTGCGTCTCTTTGCAGCGTTTTCTTGCAGCAACACAAAGGAAAAGGAACTTCACAGTTCCGCAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAAGCACAGGCACACATACACCATACCCGAGCAACATTGGTGCTGCTGCTACTGCTGCCGTTGGTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCCATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGGCATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGT]


>consensus_4971#2 CCGCCCACGCGTCCGCGTGCGTTCAGTGCGTTTTTTACAAACCTTGCCATTGTCTAATTG TGATTAAACGTTTTGGGAGGTTTTTCCAATAAAAATCTGACCTAATTCATTACGAACCGT GTGTGCAAACGTGTATTTAGCTGCATCAAAAACAAACTGCCTCGGGCCACAATCCAAGCA CCCATTGCCCCAGTTGGGACTACAGCAGTCGTGCGTCTCTTTGCAGCGTTTTCTTGCAGC AACACAAAGGAAAAGGAACTTCACAGTTCCGCAAAACACGGCTCTAATCGTGAGTAGCAT CGCGCGTCCCCGCGTGTTCAACAAGCACAGGCACACATACACCATACCCGAGCAACATTG GTGCTGCTGCTACTGCTGCCGTTGGTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCA TCGCCTGACTGCACACAGAGTGCCATCGCACGATTCACGAAGCGGACGTGAACGAGCAAA CACCCGGGGACCATAATCCATCGGCATATCAAACTTGCTGTGAACGCGGCGAAACCGCAC TGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4971#0      CCGGGGCTTTCCGCTAGTTCG--TGCGTTCAGTGCGTTTTTTACAAACCTTGCCATTGTC 58
consensus_4971#2      ------CCGCCCACGCGTCCGCGTGCGTTCAGTGCGTTTTTTACAAACCTTGCCATTGTC 54
consensus_4971#1      ------------------------------------------------------------
                                                                                  

consensus_4971#0      TAATTGTGATTAAACGTTTTGGGAGGTTTTTCCAATAAAAATCTGACCTAATTCATTACG 118
consensus_4971#2      TAATTGTGATTAAACGTTTTGGGAGGTTTTTCCAATAAAAATCTGACCTAATTCATTACG 114
consensus_4971#1      ------------------------------------------------------------
                                                                                  

consensus_4971#0      AACCGTGTGTGCAAACGTGTATTTAGCTGCATCAAAAACAAACTGCCTCGGGCCACAATC 178
consensus_4971#2      AACCGTGTGTGCAAACGTGTATTTAGCTGCATCAAAAACAAACTGCCTCGGGCCACAATC 174
consensus_4971#1      ------------------------------------------CCGCATTTGCTCACGATT 18
                                                                * ** *  *  *** ** 

consensus_4971#0      CAAGCACCCATTGCCCCAGTTGGGACTACAGCAGTCGTGCGTCTCTTTGCAGCGTTTTCT 238
consensus_4971#2      CAAGCACCCATTGCCCCAGTTGGGACTACAGCAGTCGTGCGTCTCTTTGCAGCGTTTTCT 234
consensus_4971#1      T------TGATTGCGGCAGATTGCGTTGTG--AATGGT-CATTTAACGACGGCAGGCAAA 69
                               *****  *** * *   *     * * ** * * *     * **       

consensus_4971#0      TGCAGCAACACAAAGGAAAAGGAACTTCACAGGTGTGACTTCTCCAACTGATCTGTGTGG 298
consensus_4971#2      TGCAGCAACACAAAGGAAAAGGAACTTCACAG---------------------------- 266
consensus_4971#1      AGCATTAAAACGAGCCTGGGTGGGAGTCAATGATTCG---------------TTGAGTTT 114
                       ***  ** ** *        *    ***  *                            

consensus_4971#0      CTTCCGCAAAA-CACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAA 357
consensus_4971#2      -TTCCGCAAAA-CACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAA 324
consensus_4971#1      TTTCCGCAAAAACACGGCTCTAATCGTGAGTAGCATCGCGCGTCCCCGCGTGTTCAACAA 174
                       ********** ************************************************

consensus_4971#0      GCACAGGCACACATACACCATACCCGAGCAACATTGGTGCTGCTGCTACTGCTGCCGTTG 417
consensus_4971#2      GCACAGGCACACATACACCATACCCGAGCAACATTGGTGCTGCTGCTACTGCTGCCGTTG 384
consensus_4971#1      GCACAGGCACACATACACCATACCCGAGCGACACTGGTGCTGCT------GCTGCCGTTG 228
                      ***************************** *** **********      **********

consensus_4971#0      GTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCC 477
consensus_4971#2      GTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCC 444
consensus_4971#1      GTCAGACCGAGCCCGAAATTCGTGTGGGATTAACCATCGCCTGACTGCACACAGAGTGCC 288
                      ************************************************************

consensus_4971#0      ATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGG 537
consensus_4971#2      ATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGG 504
consensus_4971#1      ATCGCACGATTCACGAAGCGGACGTGAACGAGCAAACACCCGGGGACCATAATCCATCGG 348
                      ************************************************************

consensus_4971#0      CATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGTCGCTTCTTCCACCTCGCTCGC 597
consensus_4971#2      CATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGT--------------------- 543
consensus_4971#1      CATATCAAACTTGCTGTGAACGCGGCGAAACCGCACTGTCGCTTCTTCCACCTCGCTCGC 408
                      ***************************************                     

consensus_4971#0      TTTTCGCCCGTGAACAAAAGGATGGAGTTTGATTCGGGTTCCGCTGAGCTGAACCAACGA 657
consensus_4971#2      ------------------------------------------------------------
consensus_4971#1      TTTTCGCCCGTGAACAAAAGGATGGAGTTTGATTCGGGTTCCGCTGAGCTGAACCAACGA 468
                                                                                  

consensus_4971#0      ATAGCCGAATGGTTGCGCTGGGATAAGAATGAAAAGACTTTGGAGGAGG----------- 706
consensus_4971#2      ------------------------------------------------------------
consensus_4971#1      ATAGCCGAATGGTTGCGCTGGGATAAGAATGAAAAGACTTTGGAGGAGGTACGCGAGCTG 528
                                                                                  

consensus_4971#0      ------------------------------------------------------------
consensus_4971#2      ------------------------------------------------------------
consensus_4971#1      GCACGGCGCAGTGAGTGGAAGGTGCTCGGGGACCGGTTGCTGCAGCGGCTCACCTTCGGC 588
                                                                                  

consensus_4971#0      ------------------------------------------------------------
consensus_4971#2      ------------------------------------------------------------
consensus_4971#1      ACGGCCGGGCTGCGCGGCGTGATGCAGGCCGGGTTTAATGCGATGAACGATCTGGTGGTC 648
                                                                                  

consensus_4971#0      -----------------
consensus_4971#2      -----------------
consensus_4971#1      ATACAGTCGGCGCAAGG 665
                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)