These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4974#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 949 fasta sequence [TACAATCACACACGCTTTTTCTTTCACACCGACACTCTGGCTCGTCGTTCCTTCAGCGCAGTACCGCTAGTTTCATCCCGTCTGTGTGCGTGTGTGTTTGCAAGGAGCTGTAGTTAAGATTTCATCCGTTTGCTTGTATAGATGCTGCAAACGTAAGGCCATTTTAGTTCACGTGCTATTTTTAAAACTATATATATACACACCGGTCGAAGGGATATATACATATAGAGATATAGAGTGGTAGGATGTATTAGCAAACCATAATTATGTGCCAATCCAGTTGTGTTAGATTTCTTTACTATTTCTTGGTTTTTATTAGATTTCATGTACATGTGTGTGCGTGCGTGTGTGTATGAGCCCCATTATACAATATGCCATAAGAAGGATGAGACAACAATTGTACAAAGTGGTAATAGTAGTAAATAGTACCGTTCATGTGGCCATTACGTAGGTTTTGTTTTTCTGTTTAATTTCTACACTCGATCGACACCGCGTTCTGCCGTGGTTTAGTACCTTTTTTGTAGCCAAGTGTTTTTTTAGATCGCATTACTTATACTTTACTGCAAACATTAAGGCTAGCAGGAGCGATAGCAAACTGGGCTAAGAAATTGCTCACACACACATCCGTGCACACATGCAACTTACATACCGGATGGTGGAATATTTATTGTATAGAATAGAGAGCCGAAAATAAGGAGAGGGGAGGAGAGAAAAGGGCCAGAGAGGAAAGGTGACAAAATGAAACTAGCATACCGATCAAAGCAATCGGTCCTCCCTTTACTTGTGTGTGTTCGTGTCGTTTGTGGTCGATCGCGGAGCAAAAACGTAGGAATGGCACCACACGCGTGAATCAGCGAAACCCATCATTACCGAGACGTGCAAGGCCGTGAGCGTGCGTGTGTGTGTATTTCTGACGTGCATAATGAAATAAACGTATTGTTTTTTGATA] [+] EMBL CNS08J77 [TACAATCACACACGCTTTTTCTTTCACACCGACACTCTGGCTCGTCGTTCCTTCAGCGCAGTACCGCTAGTTTCATCCCGTCTGTGTGCGTGTGTGTTTGCAAGGAGCTGTAGTTAAGATTTCATCCGTTTGCTTGTATAGATGCTGCAAACGTAAGGCCATTTTAGTTCACGTGCTATTTTTAAAACTATATATATACACACCGGTCGAAGGGATATATACATATAGAGATATAGAGTGGTAGGATGTATTAGCAAACCATAATTATGTGCCAATCCAGTTGTGTTAGATTTCTTTACTATTTCTTGGTTTTTATTAGATTTCATGTACATGTGTGTGCGTGCGTGTGTGTATGAGCCCCATTATACAATATGCCATAAGAAGGATGAGACAACAATTGTACAAAGTGGTAATAGTAGTAAATAGTACCGTTCATGTGGCCATTACGTAGGTTTTGTTTTTCTGTTTAATTTCTACACTCGATCGACACCGCGTTCTGCCGTGGTTTAGTACCTTTTTTGTAGCCAAGTGTTTTTTTAGATCGCATTACTTATACTTTACTGCAAACATTAAGGCTAGCAGGAGCGATAGCAAACTGGGCTAAGAAATTGCTCACACACACATCCGTGCACACATGCAACTTACATACCGGATGGTGGAATATTTATTGTATAGAATAGAGAGCCGAAAATAAGGAGAGGGGAGGAGAGAAAAGGGCCAGAGAGGAAAGGTGACAAAATGAAACTAGCATACCGATCAAAGCAATCGGTCCTCCCTTTACTTGTGTGTGTTCG ] [-] EMBL CNS08J78 [ AAACCATAATTATGTGCCAATCCAGTTGTGTTAGATTTCTTTACTATTTCTTGGTTTTTATTAGATTTCATGTACATGTGTGTGCGTGCGTGTGTGTATGAGCCCCATTATACAATATGCCATAAGAAGGATGAGACAACAATTGTACAAAGTGGTAATAGTAGTAAATAGTACCGTTCATGTGGCCATTACGTAGGTTTTGTTTTTCTGTTTAATTTCTAAACTCGATCGACACCG GTTCTGCCGTGGTTTAGTACCTTTTTTGTAGCCAAGTGTTTTTTTAGATCGCATTACTTATACTTTACTGCAAACATTAAGGCTAGCAGGAGCGATAGCAAACTGGGCTAAGAAATTGTTTAAAAAAACATCCGTGAAAACATGCAACTTACATACCGGATGGTGGAATATTTATTGTATAGAATAGAGAGCCGAAAATAAGGAGAGGGGAGGAGAGAAAAGGGCCAGAGAGGAAAGGTGACAAAATGAAACTAGCATACCGATCAAAGCAATCGGTCCTCCCTTTACTTGTGTGTGTGCGTGTCGTTTGTGGTCGATCGCGGAGCAAAAACGTAGGAATGGCACCACACGCGTGAATCAGCGAAACCCATCATTACCGAGACGTGCAAGGCCGTGAGCGTGCGTGTGTGTGTATTTCTGACGTGCATAATGAAATAAACGTATTGTTTTTTGATA] consensusID : consensus_4974#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 617 fasta sequence [ATGAGACAACAATTGTACAAAGTGGTAATAGTAGTAAATAGTACCGTTCATGTGGCCATTACGTAGGTTTTGTTTTTCTGTTTAATTTCTACACTCGATCGACACCGGTTCTGCCGTGGTTCAGTACCTTTTTTGTAGCCAAGTGTTTTTTTAGAGCGCAATACTTATACTTTACTGCAAACATTAAGGCTAGCAGGAGCGATAGCAAACTGGGCTAAGAAATTGCTCACACACACATACGTGCACACATACAACTTACATACCGGATGGTGGAATATTTATTGTATAGAATAGAGAGCCGAAAATAAGGAGAGGGAAGGAGAGAAAAGGGGAGAGCATGTGACAAAATGAAGCTAGCATACCGATCAAAGCAATCGGTCCTCCCTTTACTTGTGCGATGTACTTATTGGTTGAAAATTGGAACACAAATACACATCCATACACACACATCACTGAACCACTGAAACTAGCGTGGTAAATAGGCTGAGCGAATGGTGGGTGGATGGTAGGTTACGCACTCCAGTTTGTACGATACTTGTCTAGAATAAACTTCCCCCTCCCCGCTCTTTTCCGCTGATAAATATAAAACATTCAGACATGAAAGTGTGTGTGTGTGC] [+] EMBL BX616337 [ATGAGACAACAATTGTACAAAGTGGTAATAGTAGTAAATAGTACCGTTCATGTGGCCATTACGTAGGTTTTGTTTTTCTGTTTAATTTCTACACTCGATCGACACCGGTTCTGCCGTGGTTCAGTACCTTTTTTGTAGCCAAGTGTTTTTTTAGAGCGCAATACTTATACTTTACTGCAAACATTAAGGCTAGCAGGAGCGATAGCAAACTGGGCTAAGAAATTGCTCACACACACATACGTGCACACATACAACTTACATACCGGATGGTGGAATATTTATTGTATAGAATAGAGAGCCGAAAATAAGGAGAGGGAAGGAGAGAAAAGGGGAGAGCATGTGACAAAATGAAGCTAGCATACCGATCAAAGCAATCGGTCCTCCCTTTACTTGTGCGATGTACTTATTGGTTGAAAATTGGAACACAAATACACATCCATACACACACATCACTGAACCACTGAAACTAGCGTGGTAAATAGGCTGAGCGAATGGTGGGTGGATGGTAGGTTACGCACTCCAGTTTGTACGATACTTGTCTAGAATAAACTTCCCCCTCCCCGCTCTTTTCCGCTGATAAATATAAAACATTCAGACATGAAAGTGTGTGTGTGTGC] consensusID : consensus_4974#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 416 fasta sequence [CAAGAATCCCGCNACGAGTGTACATANGGCATCTTTAGTTCCACNTCGCCTACTTCTTTAAAACTATATATATACATACACCGGTCGAAAGGATATATACATATAGAGATATAAAGTGGGTAGATGTATTAGCAAACCATAATTATGTGCCAATCCANGTTGTGTTAAGATTTCTTTACTAATTTCTTGGGTTTTTATTNAGATTTCACTGTACACTGGTGTGTGCGTGCGTGTGTTGTATGAGCCCCGGTGTATACACATATGCCATAAGGAAGGATGAGACAACAATTGTACCAAAGTGGTAATAGTAGTAAATAGTACCGTTCATGTGGGCATTACGTAGTTTTGTANTATTCTGTTTTAATTTCTATCAGCTCGATCGACACCGGGTTCTGCCGTGGTTCAGGTANCGTTTA] [+] EMBL BX466467 [CAAGAATCCCGCNACGAGTGTACATANGGCATCTTTAGTTCCACNTCGCCTACTTCTTTAAAACTATATATATACATACACCGGTCGAAAGGATATATACATATAGAGATATAAAGTGGGTAGATGTATTAGCAAACCATAATTATGTGCCAATCCANGTTGTGTTAAGATTTCTTTACTAATTTCTTGGGTTTTTATTNAGATTTCACTGTACACTGGTGTGTGCGTGCGTGTGTTGTATGAGCCCCGGTGTATACACATATGCCATAAGGAAGGATGAGACAACAATTGTACCAAAGTGGTAATAGTAGTAAATAGTACCGTTCATGTGGGCATTACGTAGTTTTGTANTATTCTGTTTTAATTTCTATCAGCTCGATCGACACCGGGTTCTGCCGTGGTTCAGGTANCGTTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4974#0 -------------------------TACAATCACACACGCTTTTTCTTTCACACCGACAC 35 consensus_4974#2 ------------------------------------------------------------ consensus_4974#1 ATGAGACAACAATTGTACAAAGTGGTAATAGTAGTAAATAGTACCGTTCATGTGGCCATT 60 consensus_4974#0 TCTGGCTCGTCGTTCCTTCAGCGCAGTACCGCTAGTTTCATCCCGTCTGTGTGCGTGTGT 95 consensus_4974#2 ------------------------------------------------------------ consensus_4974#1 ACGTAGGTTTTGTTTTTCTGTTTAATTTCTACACTCGATCGACACCGGTTCTGCCGTGGT 120 consensus_4974#0 GTTTGCAAGGAGCTGTAGTTAAGATTTCATCC----GTTTGCTTGTATAGAT-GCTGCA- 149 consensus_4974#2 -------------------CAAGA----ATCC----CGCNACGAGTGTACAT-ANGGCA- 31 consensus_4974#1 TCAGTACCTTTTTTGTAGCCAAGTGTTTTTTTAGAGCGCAATACTTATACTTTACTGCAA 180 *** * * ** * *** consensus_4974#0 -AACGTAAGGCCATTTTAGT--TCACGTGCTA-TTTTTAAAACTATATATATACA--CAC 203 consensus_4974#2 -TCTTTAG-----TTCCACN--TCGCCTACT--TCTTTAAAACTATATATATACATACAC 81 consensus_4974#1 ACATTAAGGCTAGCAGGAGCGATAGCAAACTGGGCTAAGAAATTGCTCACACACACATAC 240 * * * * ** * *** * * * *** ** consensus_4974#0 CGGTCGAAGGGATATATACATATAGAGATATAGAGTG---GTAGGATGTATTAGCAAACC 260 consensus_4974#2 CGGTCGAAAGGATATATACATATAGAGATATAAAGTG---GGTAGATGTATTAGCAAACC 138 consensus_4974#1 GTGCACACATACAACTTACATACCGGATGGTGGAATATTTATTGTATAGAATAGAGAGCC 300 * * * ****** * * * * ** * *** * ** consensus_4974#0 ATAATTATGT---GCCAATCCAG-TTGTGTTA-GATTTCTTTACTA-TTT---CTTGG-T 310 consensus_4974#2 ATAATTATGT---GCCAATCCANGTTGTGTTAAGATTTCTTTACTAATTT---CTTGGGT 192 consensus_4974#1 GAAAATAAGGAGAGGGAAGGAGAGAAAAGGGGAGAGCATGTGACAAAATGAAGCTAGCAT 360 ** ** * * ** * ** * ** * * ** * * consensus_4974#0 TTTTATTA-GAT--TTCA-TGTACAT--GTGTGTGCG-TGCGTGTGT-GTATGAGCCCCA 362 consensus_4974#2 TTTTATTNAGAT--TTCACTGTACACTGGTGTGTGCG-TGCGTGTGTTGTATGAGCCCCG 249 consensus_4974#1 ACCGATCAAAGCAATCGGTCCTCCCTTTACTTGTGCGATGTACTTATTGGTTGAAAATTG 420 ** * * * ****** ** * * * *** consensus_4974#0 TTATACA---ATATG-CCATAAG-AAGGATGAGACAACAATTGTA-C-AAAGTGGTAATA 415 consensus_4974#2 GTGTATACACATATG-CCATAAGGAAGGATGAGACAACAATTGTA-CCAAAGTGGTAATA 307 consensus_4974#1 GAACACAAATACACATCCATACACACACATCACTGAACCACTGAAACTAGCGTGGTAAAT 480 * * * * ***** * ** * *** * ** * * * ******* consensus_4974#0 GTAGTAAAT-AGTACCGTTCATGTGG-CCATTACGTAGG----TTT-TGTTTTTCTGTTT 468 consensus_4974#2 GTAGTAAAT-AGTACCGTTCATGTGG-GCATTACGTAGT----TTTGTANTATTCTGTTT 361 consensus_4974#1 AGGCTGAGCGAATGGTGGGTGGATGGTAGGTTACGCACTCCAGTTTGTACGATACTTGTC 540 * * * * * *** ***** * *** * * ** * consensus_4974#0 -AATTTCTAC--ACTCGATCGACACCGCGTTCTGCCGTGGTTTAG-TACCTTTTTTGTAG 524 consensus_4974#2 TAATTTCTATCAGCTCGATCGACACCGGGTTCTGCCGTGGTTCAGGTANCGTTTA----- 416 consensus_4974#1 TAGAATAAACT-TCCCCCTCCCCGCTCTTTTCCGCTGATAAATATAAAACATTCAGACAT 599 * * * * * ** * * *** ** * * * * ** consensus_4974#0 CCAAGTGTTTTTTTAGATCGCATTACTTATACTTTACTGCAAACATTAAGGCTAGCAGGA 584 consensus_4974#2 ------------------------------------------------------------ consensus_4974#1 GAAAGTGTGTGTGTGTGC------------------------------------------ 617 consensus_4974#0 GCGATAGCAAACTGGGCTAAGAAATTGCTCACACACACATCCGTGCACACATGCAACTTA 644 consensus_4974#2 ------------------------------------------------------------ consensus_4974#1 ------------------------------------------------------------ consensus_4974#0 CATACCGGATGGTGGAATATTTATTGTATAGAATAGAGAGCCGAAAATAAGGAGAGGGGA 704 consensus_4974#2 ------------------------------------------------------------ consensus_4974#1 ------------------------------------------------------------ consensus_4974#0 GGAGAGAAAAGGGCCAGAGAGGAAAGGTGACAAAATGAAACTAGCATACCGATCAAAGCA 764 consensus_4974#2 ------------------------------------------------------------ consensus_4974#1 ------------------------------------------------------------ consensus_4974#0 ATCGGTCCTCCCTTTACTTGTGTGTGTTCGTGTCGTTTGTGGTCGATCGCGGAGCAAAAA 824 consensus_4974#2 ------------------------------------------------------------ consensus_4974#1 ------------------------------------------------------------ consensus_4974#0 CGTAGGAATGGCACCACACGCGTGAATCAGCGAAACCCATCATTACCGAGACGTGCAAGG 884 consensus_4974#2 ------------------------------------------------------------ consensus_4974#1 ------------------------------------------------------------ consensus_4974#0 CCGTGAGCGTGCGTGTGTGTGTATTTCTGACGTGCATAATGAAATAAACGTATTGTTTTT 944 consensus_4974#2 ------------------------------------------------------------ consensus_4974#1 ------------------------------------------------------------ consensus_4974#0 TGATA 949 consensus_4974#2 ----- consensus_4974#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||