These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4985#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1591 fasta sequence [AAAACAGATTCATTTTAACATGTTTATTTGCCTTTACAGTGACCTTTACAGTGTTTGCTTGCTAGAACTATAAAAACACACACCAACATGCACGAACTCACACGTATACAAACATCGACCGATTGTGGAGCATTCGTTTTTGTACAAGTTACACACAACAGAATCTTTGCCGTTTATTCTTCGGATCATTGGAAGTTTAATTTCATTGCACAGACGGAAGAGCTAACTAATACTGACTAGAATTTTGGTTCCATCGCATCCCTTCACAGAAACATTCTCGTCTTGGGAACTTCCTAAACGTAGCTACTACGGACGGGTCTTACAGAGATGTGGTACACTTGGAGGGGGATGGAGGGCGGGGAGGAAAGGCCGGATGTGAGAAGCACTATTTACAAGATATGATATACATGTACACCACAGCCAACATTGTGACGTGAAATCATGGTTTTTTTCGGTTGGTTTCAGTCGAAGGCTCTATCTGGCGGGCGAAGTTCTAGAGCGAAGTGATGGCCTCTTCGCCCGCCCTTAGCTAAACCTTCTCGATCTCCGTCTGTTGGCTGGTGATGTTGGTGATCTCCGCCAGGTTGGTGCTGTCGCGCAACGTGCGCTTCGAGCCGCGCGTACTGTAGCTCCGGTCGAGGTCCATATCGCGCGAGCAGCACAGCTGGCGGAACACGCAAAAAAAAAAAGCCAGCAGCGAGGTCATCAGGATCGTGCCGATGATCACGGTAATGACCAGCAGCCCGCTGACCTCGCCCTCCATTTCGCGCGGCGTTGCTTTAGGCGTTTTAGGCGCCACTTTTGAAATCGGACGTGTGTTTGTGTTTTGTTGGTACGGGAAGTGGAACCAGCTGGTCGTACAGGTGGTTAGGTTGATGGTGCTGCTAGAGTGTATTTCCCTCGGACACGTTCAGTACAATACTATCCTCATACAGTTCTCAAATTATTTCATCTTTATCACCGCCCGTTGGTCGGTTCGTTGTCTCTTCCACTTAAACGCTGTGATGGGTGTTGCTGGCTTCTATTGAACGGTGGCCCATTAATCAAAATCTATCGTGCTGTGGGGTGAAATGTTCCACCTTCGCGAGAATTGCACTCCCTTTTCGATGGTTAGAGTGGACTGTGTTGTCTGTACCACTGCTTTTCCCAAGAACGTCAAACGAACACACATCCAAACCGGGCAGTTTGGGTAACGTTTTAATGGATGTACGTGGGAT-CACCGTGTTCCTTTGTACCACGGTCAACACACCGTTTCCAACGAATTTTACATGATGATATCACCCGCACGGAAGTTGCTCGGTACCCTAACGAGCGACTGTGTTCCCTGCCCAATGACGAACACTTTCCCAGCTGGTTGCATTTAATTCATTAGCCTTAGTTGCAGAAAATGTAAATGAAATGCTTGCGGCACCAGCTAGGGGGGATGGTTTCTGCGCGCTACTGCTACCGATCTTGCCGACTGCGTACACTTGTTGCTTGTTGCGAGGACACTGCACGCAATAGTACGA--ACTAGTTCGCTCTGGGCGAGGCGAGACTGGGCAGAAAGACGGTACGGCCTCGGTAACGGGATGCGCACTCACAGACCGTCAAA] [+] EMBL CNS098WV [AAAACAGATTCATTTTAACATGTTTATTTGCCTTTACAGTGACCTTTACAGTGTTTGCTTGCTAGAACTATAAAAACACACACCAACATGCACGAACTCACACGTATACAAACATCGACCGATTGTGGAGCATTCGTTTTTGTACAAGTTACACACAACAGAATCTTTGCCGTTTATTCTTCGGATCATTGGAAGTTTAATTTCATTGCACAGACGGAAGAGCTAACTAATACTGACTAGAATTTTGGTTCCATCGCATCCCTTCACAGAAACATTCTCGTCTTGGGAACTTCCTAAACGTAGCTACTACGGACGGGTCTTACAGAGATGTGGTACACTTGGAGGGGGATGGAGGGCGGGGAGGAAAGGCCGGATGTGAGAAGCACTATTTACAAGATATGATATACATGTACACCACAGCCAACATTGTGACGTGAAATCATGGTTTTTTTCGGTTGGTTTCAGTCGAAGGCTCTATCTGGCGGGCGAAGTTCTAGAGCGAAGTGATGGCCTCTTCGCCCGCCCTTAGCTAAACCTTCTCGATCTCCGTCTGTTGGCTGGTGATGTTGGTGATCTCCGCCAGGTTGGTGCTGTCGCGCAACGTGCGCTTCGAGCCGCGCGTACTGTAGCTCCGGTCGAGGTCCATATCGCGCGA CAGCACAGCTGGCGGAACACGCAAAAAAAAAAAGCCAGCAGCGAGGTCATCAGGATCGTGCCGATGATCACGGTAATGACCAGCAGCCCGCTGACCTCGCCCTCCATTTCGCGCGGCGTTGCTTTAGGCGTTTTAGGCGCCACTTTTGAAATCGGACGTGTGTTTGTGTTTTGTTGGTACGGGAAGTGGAACCAGCTGGTCGTACAGGTGGTTAGGTTGATGGTGCTGCTAGAGTGTATTTCCCTCGGACACGTTCAGTACAATACTATCCTCATACAGTTCTCAAATTATTTCATCTTTATCACCGCCCGTTGGTCGGTTCGTTGTCTCTT ] [-] EMBL BX618371 [ ccGTCGAAGGCTCTTTCTGGCGGGCGAAGTTCTAGAGCGAAGTGATGGCCTCTTCGCCCGCCCTTAGCTTACCCTTCTCGATCTCCGTCTGCTGGCTGGTGATGTTGGTGATCTCCGCCAGGTTGGTGCTGTCGCGCAACGTGCGCTTCGAGCCGCGCGTACTGTAGCTCCGGTCGAGGTCCATATCGCGCGAGCAGCACAGCTGG ] [-] EMBL CNS098WU [ TCCGGTCGAGGTCCATATCGCGCGAGCAGCACAGCTGGCGGAACACGCAGATGTAGCAGGCCAGCAGCGAGGTCATCAGGATCGTGCCGATGATCACGGTAATGACCAGCAGCACGCTGACCTCGCCCTCCATTTCGCGCGGCGTTGCTTTAGGCGTTTTAGGCGCCACTTTTGAAATCGGACGTGTGTGTGTGTGTTGTTGGTACGGGAAGTGGAACCAGCTGGTCGTACAGGTGGTTAGGTTGATGGTGCTGCTAGAGTGTATTTCCCTCGGACACGTTCAGTTTTTTTTTTTCCTCATACAGTTCTCAAATTATTTCATCTTTATCACCGCCCGTT GTCGGTTCGTTGTCTCTTCCACTTAAACGCTGTGATGGGTGTTGCTGGCTTCTATTGAACGGTGGCCCATTAATCAAAATCTATCGTGCTGTGGGGTGAAATGTTCCACCTTCGCGAGAATTGCACTCCCTTTTCGATGGTTAGAGTGGACTGTGTTGTCTGTACCACTGCTTTTCCCAAGAACGTCAAACGAACACACATCCAAACCGGGCAGTTTGGGTAACGTTTTAATGGATGTACGTGGGATCCACCGTGTTCCTTTGTACCACGGTCAACACACCGTTTCCAACGAATTTTACATGATGATATCACCCGCACGGAAGTTGCTCGGTACCCTAACGAGCGACTGTGTTCCCTGCCCAATGACGAACACTTTCCCAGCTGGTTGCATTTAATTCATTAGCCTTAGTTGCAGAAAATGTAAATGAAATGCTTGCGGCACCAGCTAGGGGGGATGGTTTCTGCGCGCTACTGCTACCGATCTTGCCGACTGCGTACACTTGTTGCTTGTTGCGAGGACACTGCACGCAATAGTACGAACACTAGTTCGCTCTGGGCGAGGCGAGACTGGGCAGAAAGACGGTACGGCCTCGGTAACGGGATGCGCACTCACAGACCGTCAAA] consensusID : consensus_4985#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 657 fasta sequence [ATTATTTCATCTTTATCACCGCCCGTTGTCGGTTCGTTGTCTCTTCCACTTAAACGCTGTGATGGGTGTTGCGGGCTTCTATTGAACGGTGGCCCATTAATCAAAATCTATCGTGCTGTGGGGAGAAATGTTCCACCTTCGCGAGAAATGCACTCCCTTTTCGATGGTTAGAGTGGACTGTGTTGTCTGTATCACTGCTTTTCCCAAGAACGTCAAACGAACACACATCCAAACCGGGCAGTTTGGGTAACGTTTTAATGGATGTACGTGGGATCACCGTGTTCCCTTGTACCACGGTCAACACACCGTTTCCAACGAATTTTACATGATGATATCACCCGCACGGAAGTTGCTCGGTACCCTAACGAACGACTGCGTTCCCTGCCCAATGACGAACACTTTCCCAGCTGGTTGCATTTAATTCATTAGCCTTAGTTACAGAAAATGTAAATGAAATATGCTTGCGGCACTAGCTAGGGGGGATGGTTTCTGCGCGCTACTGCTACCGATCTTGCCGACTGCGTACACTTGTTGCTTGTTGCGAGGACACTTTCACGCAATAGTACGAACTAGTTCGCTCTGGGCGAGGCGAGACTGGGCAGAACGACGGTACGGCCTCGGTAACGGGATGCGCACTCACAGCCCACGCGTCCGCGG] [-] EMBL BM646280 [ATTATTTCATCTTTATCACCGCCCGTTGTCGGTTCGTTGTCTCTTCCACTTAAACGCTGTGATGGGTGTTGCGGGCTTCTATTGAACGGTGGCCCATTAATCAAAATCTATCGTGCTGTGGGGAGAAATGTTCCACCTTCGCGAGAAATGCACTCCCTTTTCGATGGTTAGAGTGGACTGTGTTGTCTGTATCACTGCTTTTCCCAAGAACGTCAAACGAACACACATCCAAACCGGGCAGTTTGGGTAACGTTTTAATGGATGTACGTGGGATCACCGTGTTCCCTTGTACCACGGTCAACACACCGTTTCCAACGAATTTTACATGATGATATCACCCGCACGGAAGTTGCTCGGTACCCTAACGAACGACTGCGTTCCCTGCCCAATGACGAACACTTTCCCAGCTGGTTGCATTTAATTCATTAGCCTTAGTTACAGAAAATGTAAATGAAATATGCTTGCGGCACTAGCTAGGGGGGATGGTTTCTGCGCGCTACTGCTACCGATCTTGCCGACTGCGTACACTTGTTGCTTGTTGCGAGGACACTTTCACGCAATAGTACGAACTAGTTCGCTCTGGGCGAGGCGAGACTGGGCAGAACGACGGTACGGCCTCGGTAACGGGATGCGCACTCACAGCCCACGCGTCCGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4985#0 AAAACAGATTCATTTTAACATGTTTATTTGCCTTTACAGTGACCTTTACAGTGTTTGCTT 60 consensus_4985#1 ------------------------------------------------------------ consensus_4985#0 GCTAGAACTATAAAAACACACACCAACATGCACGAACTCACACGTATACAAACATCGACC 120 consensus_4985#1 ------------------------------------------------------------ consensus_4985#0 GATTGTGGAGCATTCGTTTTTGTACAAGTTACACACAACAGAATCTTTGCCGTTTATTCT 180 consensus_4985#1 ------------------------------------------------------------ consensus_4985#0 TCGGATCATTGGAAGTTTAATTTCATTGCACAGACGGAAGAGCTAACTAATACTGACTAG 240 consensus_4985#1 ------------------------------------------------------------ consensus_4985#0 AATTTTGGTTCCATCGCATCCCTTCACAGAAACATTCTCGTCTTGGGAACTTCCTAAACG 300 consensus_4985#1 ------------------------------------------------------------ consensus_4985#0 TAGCTACTACGGACGGGTCTTACAGAGATGTGGTACACTTGGAGGGGGATGGAGGGCGGG 360 consensus_4985#1 ------------------------------------------------------------ consensus_4985#0 GAGGAAAGGCCGGATGTGAGAAGCACTATTTACAAGATATGATATACATGTACACCACAG 420 consensus_4985#1 ------------------------------------------------------------ consensus_4985#0 CCAACATTGTGACGTGAAATCATGGTTTTTTTCGGTTGGTTTCAGTCGAAGGCTCTATCT 480 consensus_4985#1 ------------------------------------------------------------ consensus_4985#0 GGCGGGCGAAGTTCTAGAGCGAAGTGATGGCCTCTTCGCCCGCCCTTAGCTAAACCTTCT 540 consensus_4985#1 ------------------------------------------------------------ consensus_4985#0 CGATCTCCGTCTGTTGGCTGGTGATGTTGGTGATCTCCGCCAGGTTGGTGCTGTCGCGCA 600 consensus_4985#1 ------------------------------------------------------------ consensus_4985#0 ACGTGCGCTTCGAGCCGCGCGTACTGTAGCTCCGGTCGAGGTCCATATCGCGCGAGCAGC 660 consensus_4985#1 ------------------------------------------------------------ consensus_4985#0 ACAGCTGGCGGAACACGCAAAAAAAAAAAGCCAGCAGCGAGGTCATCAGGATCGTGCCGA 720 consensus_4985#1 ------------------------------------------------------------ consensus_4985#0 TGATCACGGTAATGACCAGCAGCCCGCTGACCTCGCCCTCCATTTCGCGCGGCGTTGCTT 780 consensus_4985#1 ------------------------------------------------------------ consensus_4985#0 TAGGCGTTTTAGGCGCCACTTTTGAAATCGGACGTGTGTTTGTGTTTTGTTGGTACGGGA 840 consensus_4985#1 ------------------------------------------------------------ consensus_4985#0 AGTGGAACCAGCTGGTCGTACAGGTGGTTAGGTTGATGGTGCTGCTAGAGTGTATTTCCC 900 consensus_4985#1 ------------------------------------------------------------ consensus_4985#0 TCGGACACGTTCAGTACAATACTATCCTCATACAGTTCTCAAATTATTTCATCTTTATCA 960 consensus_4985#1 ------------------------------------------ATTATTTCATCTTTATCA 18 ****************** consensus_4985#0 CCGCCCGTTGGTCGGTTCGTTGTCTCTTCCACTTAAACGCTGTGATGGGTGTTGCTGGCT 1020 consensus_4985#1 CCGCCCGTTG-TCGGTTCGTTGTCTCTTCCACTTAAACGCTGTGATGGGTGTTGCGGGCT 77 ********** ******************************************** **** consensus_4985#0 TCTATTGAACGGTGGCCCATTAATCAAAATCTATCGTGCTGTGGGGTGAAATGTTCCACC 1080 consensus_4985#1 TCTATTGAACGGTGGCCCATTAATCAAAATCTATCGTGCTGTGGGGAGAAATGTTCCACC 137 ********************************************** ************* consensus_4985#0 TTCGCGAGAATTGCACTCCCTTTTCGATGGTTAGAGTGGACTGTGTTGTCTGTACCACTG 1140 consensus_4985#1 TTCGCGAGAAATGCACTCCCTTTTCGATGGTTAGAGTGGACTGTGTTGTCTGTATCACTG 197 ********** ******************************************* ***** consensus_4985#0 CTTTTCCCAAGAACGTCAAACGAACACACATCCAAACCGGGCAGTTTGGGTAACGTTTTA 1200 consensus_4985#1 CTTTTCCCAAGAACGTCAAACGAACACACATCCAAACCGGGCAGTTTGGGTAACGTTTTA 257 ************************************************************ consensus_4985#0 ATGGATGTACGTGGGATCACCGTGTTCCTTTGTACCACGGTCAACACACCGTTTCCAACG 1260 consensus_4985#1 ATGGATGTACGTGGGATCACCGTGTTCCCTTGTACCACGGTCAACACACCGTTTCCAACG 317 **************************** ******************************* consensus_4985#0 AATTTTACATGATGATATCACCCGCACGGAAGTTGCTCGGTACCCTAACGAGCGACTGTG 1320 consensus_4985#1 AATTTTACATGATGATATCACCCGCACGGAAGTTGCTCGGTACCCTAACGAACGACTGCG 377 *************************************************** ****** * consensus_4985#0 TTCCCTGCCCAATGACGAACACTTTCCCAGCTGGTTGCATTTAATTCATTAGCCTTAGTT 1380 consensus_4985#1 TTCCCTGCCCAATGACGAACACTTTCCCAGCTGGTTGCATTTAATTCATTAGCCTTAGTT 437 ************************************************************ consensus_4985#0 GCAGAAAATGTAAATGAAAT--GCTTGCGGCACCAGCTAGGGGGGATGGTTTCTGCGCGC 1438 consensus_4985#1 ACAGAAAATGTAAATGAAATATGCTTGCGGCACTAGCTAGGGGGGATGGTTTCTGCGCGC 497 ******************* *********** ************************** consensus_4985#0 TACTGCTACCGATCTTGCCGACTGCGTACACTTGTTGCTTGTTGCGAGGACACTG-CACG 1497 consensus_4985#1 TACTGCTACCGATCTTGCCGACTGCGTACACTTGTTGCTTGTTGCGAGGACACTTTCACG 557 ****************************************************** **** consensus_4985#0 CAATAGTACGAACTAGTTCGCTCTGGGCGAGGCGAGACTGGGCAGAAAGACGGTACGGCC 1557 consensus_4985#1 CAATAGTACGAACTAGTTCGCTCTGGGCGAGGCGAGACTGGGCAGAACGACGGTACGGCC 617 *********************************************** ************ consensus_4985#0 TCGGTAACGGGATGCGCACTCACAGACCGTCAAA------ 1591 consensus_4985#1 TCGGTAACGGGATGCGCACTCACAGCCCACGCGTCCGCGG 657 ************************* ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||