These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4987#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1048 fasta sequence [CGCAACTGCAAGCCAACCGCCGCGTACATGGTGACGCAGAAGCAGTACGTTAGCGGCAGCTGGAAGGACGACGCGGTGACGGCGGAGATCGAGAAGCTGCTGTCGAACGAGGCGGCCGAGCTGGAGATACCGTCCTGGACGGTGATCGAGGACGACGGGGACGATCCGGCGGGTGGGTGTGATCCACCGGGCGGTGGCGAAGAGGAGCCGTCCGTATCGGCCAGCGAACCTTCCCGCGAGAACATCAGCGACGAGGCGTACGCGAAGCGCCACACCAAGCTCGAGATCGACGAGCGGCGCCGGAAGAAGTGGGACGTGCAGCGGATACGCGAGCAGAAGCACATCGAGCGGCTGAAGAAGCGGCAGCTGAAGGAGCAGCCGGTCGAGCAGGAGGCGCAGAAGGCGATCACCACCCTCTACCCGACGGTCGACACGCTCAAGTACGTGCTCGTGACGGACGACGTGCCGGTCCAGGCGTTCGGCGAGCTGATACCGCTGCTGCCGACGAACGGTGGGTTCTCGCTGCCCTGGAACCAGCCGAAACCGGGCCCCTCGTTCGCGAATCCCCAAACCTCCTGTTCCGCTACCACCTCCTCCGCCTCTACAGCGTCCGCCGGCATGGGGCATCATGGGCCGGGACCGTCCGGGCTCGGGCTGTTGCTGGAAACGAAAACCAAATTCATCCACCGGCTGGCGCCAAGCTTGCAGGCGCAAAAGCAGCGATTCACCAAGCGAATCAAAAAGGATCCTTAAACTCCTCCCCCCCCCGCCCCTCTTTCCAGTTTTGGCCCTTTTTCGTAGTCAGTCACCGATGCATGTACATTCTTACTTTCTTTCTTTTTTTATTTTTATAATCCATTTTTTCACATTTATCCTTTAAGAACGACGATATTTTGTACATGTACGTACGACCTTTGACCTTTTGTCTCAACAACAGCTGTCCGTTGGATCCCTCAATGATGTGCATCCTCTGTGTACCGTTTACTACCCCCCTCGTCACGCTTGTTATTGTGTATTTTCCGGNGTAAAAGTTTTAGCCTTTTAAGTG] [+] EMBL AGA282706 [CGCAACTGCAAGCCAACCGCCGCGTACATGGTGACGCAGAAGCAGTACGTTAGCGGCAGCTGGAAGGACGACGCGGTGACGGCGGAGATCGAGAAGCTGCTGTCGAACGAGGCGGCCGAGCTGGAGATACCGTCCTGGACGGTGATCGAGGACGACGGGGACGATCCGGCGGGTGGGTGTGAT ] [+] EMBL BM609440 [ cCGGCGGAAATCGAGAAGCTGCTGTCGAACGAGGCGGCCGAGCTGGAGATACCGTCCTGGACGGTGATCGAGGACGACGGGGACGATCCGGCGGGTGGGTGTGATCCACCGGGCGGTGGCGAAGAGGAGCCGTCCGTATCGGCCAGCGAACCTTCCCGCGAGAACATCAGCGACGAGGCGTACGCGAAGCGCCACACCAAGCTCGAGATCGACGAGCGGCGCCGGAAGAAGTGGGACGTGCAGCGGATACGCGAGCAGAAGCACATCGAGCGGCTGAAGAAGCGGCAGCTGAAGGAGCAGCCGGTCGAGCAGGAGGCGCAGAAGGCGATCACCACCCTCTACCCGACGGTCGACACGCTCAAGTACGTGCTCGTGACGGACGACGTGCCGGTCCAGGCGTTCGGCGAGCTGATACCGCTGCTGCCGACGAACGGTGGGTTCTCGCTGCCCTGGAACCAGCCGAAACCGGGCCCCTCGTTCGCGAATCCCCAAACCTCCTGTTCCGCTACCACCTCCTCCGCCTCTACAGCGTCCGCCGGCATGGGGCATCATGGGCCGGGACCGTCCGGGCTCGGGCTGTTGCTGGAAACGAAAACCAAATTCATCCACCGGCTGGCGCCAAGCT ] [+] EMBL BX624490 [ CGATCACCACCCTCTACCCGACGGTCGACACGCTCAAGTACGTGCTCGTGACGGACGACGTGCCGGTCCAGGCGTTCGGCGAGCTGATACCGCTGCTGCCGACGAACGGTGGGTTCTCGCTGCCCTGGAACCAGCCGAAACCGGGCCCCTCGTTCGCGAATCCCCAAACCTCCTGTTCCACTACCACCTCCTCCGCCTCTACAGCGTCCGCCGGCATGGGGCATCATGGGCCGGGACCGTCCGGGCTTGGGCTGTTGCTGGAAACGAAAACCAAATTCATCCACCGGCTGGCGCCAAGCTTGCAGGCGCAAAAGCAGCGATTCACCAAGCGAATCAAAAAGGATCCTTAAACTCCTCCCCCCCCCGCCCCTCTTTCCAGTTTTGGCCCTTTTTCGTAGTCAGTCACCGATGCATGTACATTCTTACTTTCTTTCTTTTTTTATTTTTATAATCCATTTTTTCACATTTATCCTTTAAGAACGACGATATTTTGTACATGTACGTACGACCTTTGACCTTTTGTCTCAACAACAGCTGTCCGTTGGATCCCTCAATGATGTGCATCCTCTGTGTACCGTTTACTACCCCCCTCGTCACGCTTGTTATTGTGTATTTTCCGGNGTAAAAGTTTTAGCCTTTTAAGTG] consensusID : consensus_4987#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence [AGGCAGAATCGGCACGATGGGCGAACCTTCCCGCGAGAACATCAGCGACGAGGCGTACGCGAAGCGCCACACCAAGCTCGAGATCGACGAGCGGCGCCGGAAGAAGTGGGACGTGCAGCGGATACGCGAGCAGAAGCACATCGAGCGGCTGAAGAAGCGGCAGCTGAAGGAGCAGCCGGTCGAGCAGGAGGCGCAGAAGGCGATCACCACCCTCTACCCGACGGTCGACACGCTCAAGTACGTGCTCGTGACGGACGACGTGCCGGTCCAGGCGTTCGGCGAGCTGATACCGCTGCTGCCGACGAACGGTGGGTTCTCGCTGCCCTGGAACCAGCCGAAACCGGGCCCCTCGTTCGCGAATCCCCAAACCTCCTGTTCCACTACCACCTCCTCCGCTCTACCGCGTCCGCCGGCATGGGGCATCATGGGCCGGGACCGTCCGGGCTCGGGCTGTTGCTGGAAACGAAAACCAAATTCATCCACCGGCTGGCGCCAAGCTTGCAGGCGGCAAAAGCAGCGATTCACCAAGCGAATCAAAAGGATCCTTAAACTCCTCCCCCACAA] [+] EMBL BX467827 [AGGCAGAATCGGCACGATGGGCGAACCTTCCCGCGAGAACATCAGCGACGAGGCGTACGCGAAGCGCCACACCAAGCTCGAGATCGACGAGCGGCGCCGGAAGAAGTGGGACGTGCAGCGGATACGCGAGCAGAAGCACATCGAGCGGCTGAAGAAGCGGCAGCTGAAGGAGCAGCCGGTCGAGCAGGAGGCGCAGAAGGCGATCACCACCCTCTACCCGACGGTCGACACGCTCAAGTACGTGCTCGTGACGGACGACGTGCCGGTCCAGGCGTTCGGCGAGCTGATACCGCTGCTGCCGACGAACGGTGGGTTCTCGCTGCCCTGGAACCAGCCGAAACCGGGCCCCTCGTTCGCGAATCCCCAAACCTCCTGTTCCACTACCACCTCCTCCGCTCTACCGCGTCCGCCGGCATGGGGCATCATGGGCCGGGACCGTCCGGGCTCGGGCTGTTGCTGGAAACGAAAACCAAATTCATCCACCGGCTGGCGCCAAGCTTGCAGGCGGCAAAAGCAGCGATTCACCAAGCGAATCAAAAGGATCCTTAAACTCCTCCCCCACAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4987#0 CGCAACTGCAAGCCAACCGCCGCGTACATGGTGACGCAGAAGCAGTACGTTAGCGGCAGC 60 consensus_4987#1 ------------------------------------------------------------ consensus_4987#0 TGGAAGGACGACGCGGTGACGGCGGAGATCGAGAAGCTGCTGTCGAACGAGGCGGCCGAG 120 consensus_4987#1 ------------------------------------------------------------ consensus_4987#0 CTGGAGATACCGTCCTGGACGGTGATCGAGGACGACGGGGACGATCCGGCGGGTGGGTGT 180 consensus_4987#1 ------------------------------------------------------------ consensus_4987#0 GATCCACCGGGCGGTGGCGAAGAGGAGCCGTCCGTATCGGCCAGCGAACCTTCCCGCGAG 240 consensus_4987#1 ----------------------AGGCAGAATCGGCA-CGATGGGCGAACCTTCCCGCGAG 37 *** ** * * ** ***************** consensus_4987#0 AACATCAGCGACGAGGCGTACGCGAAGCGCCACACCAAGCTCGAGATCGACGAGCGGCGC 300 consensus_4987#1 AACATCAGCGACGAGGCGTACGCGAAGCGCCACACCAAGCTCGAGATCGACGAGCGGCGC 97 ************************************************************ consensus_4987#0 CGGAAGAAGTGGGACGTGCAGCGGATACGCGAGCAGAAGCACATCGAGCGGCTGAAGAAG 360 consensus_4987#1 CGGAAGAAGTGGGACGTGCAGCGGATACGCGAGCAGAAGCACATCGAGCGGCTGAAGAAG 157 ************************************************************ consensus_4987#0 CGGCAGCTGAAGGAGCAGCCGGTCGAGCAGGAGGCGCAGAAGGCGATCACCACCCTCTAC 420 consensus_4987#1 CGGCAGCTGAAGGAGCAGCCGGTCGAGCAGGAGGCGCAGAAGGCGATCACCACCCTCTAC 217 ************************************************************ consensus_4987#0 CCGACGGTCGACACGCTCAAGTACGTGCTCGTGACGGACGACGTGCCGGTCCAGGCGTTC 480 consensus_4987#1 CCGACGGTCGACACGCTCAAGTACGTGCTCGTGACGGACGACGTGCCGGTCCAGGCGTTC 277 ************************************************************ consensus_4987#0 GGCGAGCTGATACCGCTGCTGCCGACGAACGGTGGGTTCTCGCTGCCCTGGAACCAGCCG 540 consensus_4987#1 GGCGAGCTGATACCGCTGCTGCCGACGAACGGTGGGTTCTCGCTGCCCTGGAACCAGCCG 337 ************************************************************ consensus_4987#0 AAACCGGGCCCCTCGTTCGCGAATCCCCAAACCTCCTGTTCCGCTACCACCTCCTCCGCC 600 consensus_4987#1 AAACCGGGCCCCTCGTTCGCGAATCCCCAAACCTCCTGTTCCACTACCACCTCCTCCGC- 396 ****************************************** **************** consensus_4987#0 TCTACAGCGTCCGCCGGCATGGGGCATCATGGGCCGGGACCGTCCGGGCTCGGGCTGTTG 660 consensus_4987#1 TCTACCGCGTCCGCCGGCATGGGGCATCATGGGCCGGGACCGTCCGGGCTCGGGCTGTTG 456 ***** ****************************************************** consensus_4987#0 CTGGAAACGAAAACCAAATTCATCCACCGGCTGGCGCCAAGCTTGCAGGCG-CAAAAGCA 719 consensus_4987#1 CTGGAAACGAAAACCAAATTCATCCACCGGCTGGCGCCAAGCTTGCAGGCGGCAAAAGCA 516 *************************************************** ******** consensus_4987#0 GCGATTCACCAAGCGAATCAAAAAGGATCCTTAAACTCCTCCCCCCCCCGCCCCTCTTTC 779 consensus_4987#1 GCGATTCACCAAGCGAATCAAAA-GGATCCTTAAACTCCTCCCCCACAA----------- 564 *********************** ********************* * consensus_4987#0 CAGTTTTGGCCCTTTTTCGTAGTCAGTCACCGATGCATGTACATTCTTACTTTCTTTCTT 839 consensus_4987#1 ------------------------------------------------------------ consensus_4987#0 TTTTTATTTTTATAATCCATTTTTTCACATTTATCCTTTAAGAACGACGATATTTTGTAC 899 consensus_4987#1 ------------------------------------------------------------ consensus_4987#0 ATGTACGTACGACCTTTGACCTTTTGTCTCAACAACAGCTGTCCGTTGGATCCCTCAATG 959 consensus_4987#1 ------------------------------------------------------------ consensus_4987#0 ATGTGCATCCTCTGTGTACCGTTTACTACCCCCCTCGTCACGCTTGTTATTGTGTATTTT 1019 consensus_4987#1 ------------------------------------------------------------ consensus_4987#0 CCGGNGTAAAAGTTTTAGCCTTTTAAGTG 1048 consensus_4987#1 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||