cluster # 4988

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Anopheles gambiae
cluster # 4988 cluster # 4988 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_4988#0 length = 753 sequences # 2

consensus_4988#1 length = 659 sequences # 2

consensusID : consensus_4988#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 753
fasta sequence

                              [GCAGAATCCGGCACGAGGCGTTTTTCTCTTCTACCTCTCTTAGCAACTACGATCAAACAATCGTTTTGTGGCCAGAAAATCGGGACACAGCAGGACGGAAAACGGTTTTAGTTGTAGCCTCCCACCCCCACCCCTCTGCGAGAGAACCTGAGTACTTCCTTCGACGAAGTAAAGTAGTGCGGACGACCATGGACGGAGCGAGCTGCTAGGCTGACGAGAACGACCTCGGGAAGGGTGCTGGGTTCAGCCGCGCTCATCACAGTGTGGCGGAGTAGCCAGTTGTTTTCGTAATGTAAATCCCAAAGCCCGTCGTCGTGTTTCGTCTCCCGTGTCACATCCGTCCTCGCACGCACGGTGCTAGCTGTTGCTGGCGTACACAGATGAATTGCTACCTGCGTGTGACGTGAGGGTCCGTTTTGTTTGCTGGCATTCGCTCGAAAGGAACAAAAAAGTGCGTCGAGGAAACGTGTGTTCGAACGACTATCGATCCTATCGACTGGTTGGATTGGGAGGCGGAAAGGGAACAACCGCGGCGTGCATTTAGGGCCACGCAGTATGCCTTTTCGGTGACAGAGGGCAGTTGTGAATCAGCTTACTCTACAACCCGACCGGCGGAAAAGGCAGGCNAAGCAAGGCAAGGCATTTGGATTGGACAGTTTCCCGTTGGTTGATGTTGACTCCCGGGGACTNAACGGAACGGGCCAACATTAAGGAAACCGTGCTATTCGACAGGTGTTACCTTTTGCACAANAA]

[+] EMBL BX467862             [GCAGAATCCGGCACGAGGCGTTTTTCTCTTCTACCTCTCTTAGCAACTACGATCAAACAATCGTTTTGTGGCCAGAAAATCGGGACACAGCAGGACGGAAAACGGTTTTAGTTGTAGCCTCCCACCCCCACCCCTCTGCGAGAGAACCTGAGTACTTCCTTCGACGAAGTAAAGTAGTGCGGACGACCATGGACGGAGCGAGCTGCTAGGCTGACGAGAACGACCTCGGGAAGGGTGCTGGGTTCAGCCGCGCTCATCACAGTGTGGCGGAGTAGCCAGTTGTTTTCGTAATGTAAATCCCAAAGCCCGTCGTCGTGTTTCGTCTCCCGTGTCACATCCGTCCTCGCACGCACGGTGCTAGCTGTTGCTGGCGTACACAGATGAATTGCTACCTGCGTGTGACGTGAGGGTCCGTTTTGTTTGCTGGCATTCGCTCGAAAGGAACAAAAAAGTGCGTCGAGGAAACGTGTGTTCGAACGACTATCGATCCTATCGACTGGTTGGATTGGGAGGCGGAAAGGGAACAACCGCGGCGTGCATTTAGGGCCACGCAGTATGCCTTTTCGGTGACAGAGGGCAGTTGTGAATCAGCTTACTCTACAACCCGACCGGCGGAAAAGGCAGGCNAAGCAAGGCAAGGCATTTGGATTGGACAGTTTCCCGTTGGTTGATGTTGACTCCCGGGGACTNAACGGAACGGGCCAACATTAAGGAAACCGTGCTATTCGACAGGTGTTACCTTTTGCACAANAA]
[+] EMBL BM603692             [                                               ccgGATCAAACAATCGTTTTGTGGCCAGAAAATCGGGACACAGCAGGACGGAAAACGGTTTTAGTTGTACCCTCCCACCCCCACCCCTCTGCGAGAGAAGCTGAGTACTTCCTTCGACGAAGTAAAGTAGTGCGGACGACCATGGACGGAGCGAGCTGCTAGGCTGACGAGAACGACCTCGGGAAGGGTGCTGGGTTCAGCCGCGCTCATCACAGTGTGGCGGAGTAGCCAGTTGTTTTCGTAATGTAAATCCCAACGCCCGTCGTCGTGTTTCGTCTCCCGTGTCACATCCGTCCTCACACGCACGGTGCTAGCTGTTGCTGGCGTACACAGATGAATTGCTTCCTGCGTGTGACGTGA                                                                                                                                                                                                                                                                                                                                                          ]




>consensus_4988#0
GCAGAATCCGGCACGAGGCGTTTTTCTCTTCTACCTCTCTTAGCAACTACGATCAAACAA
TCGTTTTGTGGCCAGAAAATCGGGACACAGCAGGACGGAAAACGGTTTTAGTTGTAGCCT
CCCACCCCCACCCCTCTGCGAGAGAACCTGAGTACTTCCTTCGACGAAGTAAAGTAGTGC
GGACGACCATGGACGGAGCGAGCTGCTAGGCTGACGAGAACGACCTCGGGAAGGGTGCTG
GGTTCAGCCGCGCTCATCACAGTGTGGCGGAGTAGCCAGTTGTTTTCGTAATGTAAATCC
CAAAGCCCGTCGTCGTGTTTCGTCTCCCGTGTCACATCCGTCCTCGCACGCACGGTGCTA
GCTGTTGCTGGCGTACACAGATGAATTGCTACCTGCGTGTGACGTGAGGGTCCGTTTTGT
TTGCTGGCATTCGCTCGAAAGGAACAAAAAAGTGCGTCGAGGAAACGTGTGTTCGAACGA
CTATCGATCCTATCGACTGGTTGGATTGGGAGGCGGAAAGGGAACAACCGCGGCGTGCAT
TTAGGGCCACGCAGTATGCCTTTTCGGTGACAGAGGGCAGTTGTGAATCAGCTTACTCTA
CAACCCGACCGGCGGAAAAGGCAGGCNAAGCAAGGCAAGGCATTTGGATTGGACAGTTTC
CCGTTGGTTGATGTTGACTCCCGGGGACTNAACGGAACGGGCCAACATTAAGGAAACCGT
GCTATTCGACAGGTGTTACCTTTTGCACAANAA

consensusID : consensus_4988#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 659
fasta sequence

                              [CCGGACGGAGCGAGCTGCTAGGCTGACGAGAACGACCTCGGGAAGGGTGCTGGGTTCAGCCGCGCTCATCACAGTGTGGCGGAGTAGCCAGTTGTTTTCGTAATGTAAATCCCAACGCCCGTCGTCGTGTTTCGTCTCCCGTGTCACATCCGTCCTCACACGCACGGTGCTAGCTGTTGCTGGCGTACACAGATGAATTGCTTCCTGCGTGTGACGTGAGGGTCCGTTTTTTTGTTTGCTGGCATTCGCTCAAAAGGAAAAAAAAGTGCGTCGAGGAAGCGTGTGTTCGAACGACTATCGATCCTATCGACTGTTTGGATTGGGAGGTGGAAAGGGAAAAACGTCGGCGTGCATTTAGGGCCACGCAGTATGCCTTTCGGTGACAGAGGCAGTTGTGCATCAGCTTACTCTACCACCCCCCGCGAAGGCAGCAGCAGCAGCAGCACCATTGGATGGAGTTCCGTGTGATGTGCTCCGGGACTAACGACGGCCAACATGAGGAACGTTCTATCGAGTGTTTACCTTTCCACGAGCATACTGCACGCCTGCAGCGCTATACCGATCCCGTACGTCCATACAGGACAGCATGATGCCGTGATCTTCGGGATGCTGGCCTGCCTGGGGCTCGGCTCCTTCATAATGGGGTTTTGCATTTTCTG]

[+] EMBL BM598583             [CCGGACGGAGCGAGCTGCTAGGCTGACGAGAACGACCTCGGGAAGGGTGCTGGGTTCAGCCGCGCTCATCACAGTGTGGCGGAGTAGCCAGTTGTTTTCGTAATGTAAATCCCAACGCCCGTCGTCGTGTTTCGTCTCCCGTGTCACATCCGTCCTCACACGCACGGTGCTAGCTGTTGCTGGCGTACACAGATGAATTGCTTCCTGCGTGTGACGTGAGGGTCCGTTTTTTTGTTTGCTGGCATTCGCTCAAAAGGAAAAAAAAGTGCGTCGAGGAAGCGTGTGTTCGAACGACTATCGATCCTATCGACTGTTTGGATTGGGAGGTGGAAAGGGAAAAACGTCGGCGTGCATTTAGGGCCACGCAGTATGCCTTTCGGTGACAGAGGCAGTTGTGCATCAGCTTACTCTACCACCCCCCGCGAAGGCAGCAGCAGCAGCAGCACCATTGGATGGAGTTCCGTGTGATGTGCTCCGGGACTAACGACGGCCAACATGAGGAACGTTCTATCGAGTGTTTACCTTTCCACGAGCATACTGCACGCCTGCAGCGCTATACCGATCCCGTACGTCCATACAGGACAGCATGATGCCGTGATCTTCGGGATGCTGGCCTGCCTGGGGCTCGGCTCCTTCATAATGGGGTTTTGCATTTTCTG]
[+] EMBL AGA282735            [                                                                                                                                                                                                                                                                                                              CCTATCGACTGGTTGGATTGGGAGGCGGAAAGGGAACAACCGCGGCGTGCATTTAGGGCCACGCAGTATGCCTTTCGGTGACAGAGGCAGTTGTGAATCAGCTTACTCTACCACCCCCCGCGAAGGCAGCAGCAGCAG      CATTGGATGGAGTTCCGTGTGATGTGCTCCGGGACTAACGACGGCCAACAT                                                                                                                                                                  ]




>consensus_4988#1
CCGGACGGAGCGAGCTGCTAGGCTGACGAGAACGACCTCGGGAAGGGTGCTGGGTTCAGC
CGCGCTCATCACAGTGTGGCGGAGTAGCCAGTTGTTTTCGTAATGTAAATCCCAACGCCC
GTCGTCGTGTTTCGTCTCCCGTGTCACATCCGTCCTCACACGCACGGTGCTAGCTGTTGC
TGGCGTACACAGATGAATTGCTTCCTGCGTGTGACGTGAGGGTCCGTTTTTTTGTTTGCT
GGCATTCGCTCAAAAGGAAAAAAAAGTGCGTCGAGGAAGCGTGTGTTCGAACGACTATCG
ATCCTATCGACTGTTTGGATTGGGAGGTGGAAAGGGAAAAACGTCGGCGTGCATTTAGGG
CCACGCAGTATGCCTTTCGGTGACAGAGGCAGTTGTGCATCAGCTTACTCTACCACCCCC
CGCGAAGGCAGCAGCAGCAGCAGCACCATTGGATGGAGTTCCGTGTGATGTGCTCCGGGA
CTAACGACGGCCAACATGAGGAACGTTCTATCGAGTGTTTACCTTTCCACGAGCATACTG
CACGCCTGCAGCGCTATACCGATCCCGTACGTCCATACAGGACAGCATGATGCCGTGATC
TTCGGGATGCTGGCCTGCCTGGGGCTCGGCTCCTTCATAATGGGGTTTTGCATTTTCTG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_4988#0      GCAGAATCCGGCACGAGGCGTTTTTCTCTTCTACCTCTCTTAGCAACTACGATCAAACAA 60
consensus_4988#1      ------------------------------------------------------------
                                                                                  

consensus_4988#0      TCGTTTTGTGGCCAGAAAATCGGGACACAGCAGGACGGAAAACGGTTTTAGTTGTAGCCT 120
consensus_4988#1      ------------------------------------------------------------
                                                                                  

consensus_4988#0      CCCACCCCCACCCCTCTGCGAGAGAACCTGAGTACTTCCTTCGACGAAGTAAAGTAGTGC 180
consensus_4988#1      ------------------------------------------------------------
                                                                                  

consensus_4988#0      GGACGACCATGGACGGAGCGAGCTGCTAGGCTGACGAGAACGACCTCGGGAAGGGTGCTG 240
consensus_4988#1      --------CCGGACGGAGCGAGCTGCTAGGCTGACGAGAACGACCTCGGGAAGGGTGCTG 52
                                **************************************************

consensus_4988#0      GGTTCAGCCGCGCTCATCACAGTGTGGCGGAGTAGCCAGTTGTTTTCGTAATGTAAATCC 300
consensus_4988#1      GGTTCAGCCGCGCTCATCACAGTGTGGCGGAGTAGCCAGTTGTTTTCGTAATGTAAATCC 112
                      ************************************************************

consensus_4988#0      CAAAGCCCGTCGTCGTGTTTCGTCTCCCGTGTCACATCCGTCCTCGCACGCACGGTGCTA 360
consensus_4988#1      CAACGCCCGTCGTCGTGTTTCGTCTCCCGTGTCACATCCGTCCTCACACGCACGGTGCTA 172
                      *** ***************************************** **************

consensus_4988#0      GCTGTTGCTGGCGTACACAGATGAATTGCTACCTGCGTGTGACGTGAGGGTCCGTTTT-- 418
consensus_4988#1      GCTGTTGCTGGCGTACACAGATGAATTGCTTCCTGCGTGTGACGTGAGGGTCCGTTTTTT 232
                      ****************************** ***************************  

consensus_4988#0      -GTTTGCTGGCATTCGCTCGAAAGGAACAAAAAAGTGCGTCGAGGAAACGTGTGTTCGAA 477
consensus_4988#1      TGTTTGCTGGCATTCGCTCAAAAGGAA-AAAAAAGTGCGTCGAGGAAGCGTGTGTTCGAA 291
                       ****************** ******* ******************* ************

consensus_4988#0      CGACTATCGATCCTATCGACTGGTTGGATTGGGAGGCGGAAAGGGAACAACCGCGGCGTG 537
consensus_4988#1      CGACTATCGATCCTATCGACTGTTTGGATTGGGAGGTGGAAAGGGAAAAACGTCGGCGTG 351
                      ********************** ************* ********** ***  *******

consensus_4988#0      CATTTAGGGCCACGCAGTATGCCTTTTCGGTGACAGAGGGCAGTTGTGAATCAGCTTACT 597
consensus_4988#1      CATTTAGGGCCACGCAGTATGCCTTT-CGGTGACAGAGG-CAGTTGTGCATCAGCTTACT 409
                      ************************** ************ ******** ***********

consensus_4988#0      CTACAACCCGACC----GGCGGAAAAGGCAGGCNAAGCAAGGCAAGGCATTTGGATTGGA 653
consensus_4988#1      CTACCACCCCCCGCGAAGGCAGCAGCAGCAGCAGCACCATTGGATGGAGTTCCGTGTGAT 469
                      **** ****  *     *** * *   ****    * **  * * **  **  *  **  

consensus_4988#0      CAGTTTCCCGTTGGTTGATGTTGACTCCCGGGGACTNAACGGAACGGGCCAACATTAAGG 713
consensus_4988#1      GTGCTCCGGGACTAACGACGGCCAACATGAGGAACGTTCTATCGAGTGTTTACCTTTCCA 529
                        * * *  *      ** *   *      ** **          * *   ** **    

consensus_4988#0      AAACCGTGCTATTCGACAGGTGT----TACC--TTTTGCACAANAA-------------- 753
consensus_4988#1      CGAGCATACTGCACGCCTGCAGCGCTATACCGATCCCGTACGTCCATACAGGACAGCATG 589
                        * * * **   ** * *  *     ****  *   * **    *              

consensus_4988#0      ------------------------------------------------------------
consensus_4988#1      ATGCCGTGATCTTCGGGATGCTGGCCTGCCTGGGGCTCGGCTCCTTCATAATGGGGTTTT 649
                                                                                  

consensus_4988#0      ----------
consensus_4988#1      GCATTTTCTG 659