These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4988#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 753 fasta sequence [GCAGAATCCGGCACGAGGCGTTTTTCTCTTCTACCTCTCTTAGCAACTACGATCAAACAATCGTTTTGTGGCCAGAAAATCGGGACACAGCAGGACGGAAAACGGTTTTAGTTGTAGCCTCCCACCCCCACCCCTCTGCGAGAGAACCTGAGTACTTCCTTCGACGAAGTAAAGTAGTGCGGACGACCATGGACGGAGCGAGCTGCTAGGCTGACGAGAACGACCTCGGGAAGGGTGCTGGGTTCAGCCGCGCTCATCACAGTGTGGCGGAGTAGCCAGTTGTTTTCGTAATGTAAATCCCAAAGCCCGTCGTCGTGTTTCGTCTCCCGTGTCACATCCGTCCTCGCACGCACGGTGCTAGCTGTTGCTGGCGTACACAGATGAATTGCTACCTGCGTGTGACGTGAGGGTCCGTTTTGTTTGCTGGCATTCGCTCGAAAGGAACAAAAAAGTGCGTCGAGGAAACGTGTGTTCGAACGACTATCGATCCTATCGACTGGTTGGATTGGGAGGCGGAAAGGGAACAACCGCGGCGTGCATTTAGGGCCACGCAGTATGCCTTTTCGGTGACAGAGGGCAGTTGTGAATCAGCTTACTCTACAACCCGACCGGCGGAAAAGGCAGGCNAAGCAAGGCAAGGCATTTGGATTGGACAGTTTCCCGTTGGTTGATGTTGACTCCCGGGGACTNAACGGAACGGGCCAACATTAAGGAAACCGTGCTATTCGACAGGTGTTACCTTTTGCACAANAA] [+] EMBL BX467862 [GCAGAATCCGGCACGAGGCGTTTTTCTCTTCTACCTCTCTTAGCAACTACGATCAAACAATCGTTTTGTGGCCAGAAAATCGGGACACAGCAGGACGGAAAACGGTTTTAGTTGTAGCCTCCCACCCCCACCCCTCTGCGAGAGAACCTGAGTACTTCCTTCGACGAAGTAAAGTAGTGCGGACGACCATGGACGGAGCGAGCTGCTAGGCTGACGAGAACGACCTCGGGAAGGGTGCTGGGTTCAGCCGCGCTCATCACAGTGTGGCGGAGTAGCCAGTTGTTTTCGTAATGTAAATCCCAAAGCCCGTCGTCGTGTTTCGTCTCCCGTGTCACATCCGTCCTCGCACGCACGGTGCTAGCTGTTGCTGGCGTACACAGATGAATTGCTACCTGCGTGTGACGTGAGGGTCCGTTTTGTTTGCTGGCATTCGCTCGAAAGGAACAAAAAAGTGCGTCGAGGAAACGTGTGTTCGAACGACTATCGATCCTATCGACTGGTTGGATTGGGAGGCGGAAAGGGAACAACCGCGGCGTGCATTTAGGGCCACGCAGTATGCCTTTTCGGTGACAGAGGGCAGTTGTGAATCAGCTTACTCTACAACCCGACCGGCGGAAAAGGCAGGCNAAGCAAGGCAAGGCATTTGGATTGGACAGTTTCCCGTTGGTTGATGTTGACTCCCGGGGACTNAACGGAACGGGCCAACATTAAGGAAACCGTGCTATTCGACAGGTGTTACCTTTTGCACAANAA] [+] EMBL BM603692 [ ccgGATCAAACAATCGTTTTGTGGCCAGAAAATCGGGACACAGCAGGACGGAAAACGGTTTTAGTTGTACCCTCCCACCCCCACCCCTCTGCGAGAGAAGCTGAGTACTTCCTTCGACGAAGTAAAGTAGTGCGGACGACCATGGACGGAGCGAGCTGCTAGGCTGACGAGAACGACCTCGGGAAGGGTGCTGGGTTCAGCCGCGCTCATCACAGTGTGGCGGAGTAGCCAGTTGTTTTCGTAATGTAAATCCCAACGCCCGTCGTCGTGTTTCGTCTCCCGTGTCACATCCGTCCTCACACGCACGGTGCTAGCTGTTGCTGGCGTACACAGATGAATTGCTTCCTGCGTGTGACGTGA ] consensusID : consensus_4988#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 659 fasta sequence [CCGGACGGAGCGAGCTGCTAGGCTGACGAGAACGACCTCGGGAAGGGTGCTGGGTTCAGCCGCGCTCATCACAGTGTGGCGGAGTAGCCAGTTGTTTTCGTAATGTAAATCCCAACGCCCGTCGTCGTGTTTCGTCTCCCGTGTCACATCCGTCCTCACACGCACGGTGCTAGCTGTTGCTGGCGTACACAGATGAATTGCTTCCTGCGTGTGACGTGAGGGTCCGTTTTTTTGTTTGCTGGCATTCGCTCAAAAGGAAAAAAAAGTGCGTCGAGGAAGCGTGTGTTCGAACGACTATCGATCCTATCGACTGTTTGGATTGGGAGGTGGAAAGGGAAAAACGTCGGCGTGCATTTAGGGCCACGCAGTATGCCTTTCGGTGACAGAGGCAGTTGTGCATCAGCTTACTCTACCACCCCCCGCGAAGGCAGCAGCAGCAGCAGCACCATTGGATGGAGTTCCGTGTGATGTGCTCCGGGACTAACGACGGCCAACATGAGGAACGTTCTATCGAGTGTTTACCTTTCCACGAGCATACTGCACGCCTGCAGCGCTATACCGATCCCGTACGTCCATACAGGACAGCATGATGCCGTGATCTTCGGGATGCTGGCCTGCCTGGGGCTCGGCTCCTTCATAATGGGGTTTTGCATTTTCTG] [+] EMBL BM598583 [CCGGACGGAGCGAGCTGCTAGGCTGACGAGAACGACCTCGGGAAGGGTGCTGGGTTCAGCCGCGCTCATCACAGTGTGGCGGAGTAGCCAGTTGTTTTCGTAATGTAAATCCCAACGCCCGTCGTCGTGTTTCGTCTCCCGTGTCACATCCGTCCTCACACGCACGGTGCTAGCTGTTGCTGGCGTACACAGATGAATTGCTTCCTGCGTGTGACGTGAGGGTCCGTTTTTTTGTTTGCTGGCATTCGCTCAAAAGGAAAAAAAAGTGCGTCGAGGAAGCGTGTGTTCGAACGACTATCGATCCTATCGACTGTTTGGATTGGGAGGTGGAAAGGGAAAAACGTCGGCGTGCATTTAGGGCCACGCAGTATGCCTTTCGGTGACAGAGGCAGTTGTGCATCAGCTTACTCTACCACCCCCCGCGAAGGCAGCAGCAGCAGCAGCACCATTGGATGGAGTTCCGTGTGATGTGCTCCGGGACTAACGACGGCCAACATGAGGAACGTTCTATCGAGTGTTTACCTTTCCACGAGCATACTGCACGCCTGCAGCGCTATACCGATCCCGTACGTCCATACAGGACAGCATGATGCCGTGATCTTCGGGATGCTGGCCTGCCTGGGGCTCGGCTCCTTCATAATGGGGTTTTGCATTTTCTG] [+] EMBL AGA282735 [ CCTATCGACTGGTTGGATTGGGAGGCGGAAAGGGAACAACCGCGGCGTGCATTTAGGGCCACGCAGTATGCCTTTCGGTGACAGAGGCAGTTGTGAATCAGCTTACTCTACCACCCCCCGCGAAGGCAGCAGCAGCAG CATTGGATGGAGTTCCGTGTGATGTGCTCCGGGACTAACGACGGCCAACAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4988#0 GCAGAATCCGGCACGAGGCGTTTTTCTCTTCTACCTCTCTTAGCAACTACGATCAAACAA 60 consensus_4988#1 ------------------------------------------------------------ consensus_4988#0 TCGTTTTGTGGCCAGAAAATCGGGACACAGCAGGACGGAAAACGGTTTTAGTTGTAGCCT 120 consensus_4988#1 ------------------------------------------------------------ consensus_4988#0 CCCACCCCCACCCCTCTGCGAGAGAACCTGAGTACTTCCTTCGACGAAGTAAAGTAGTGC 180 consensus_4988#1 ------------------------------------------------------------ consensus_4988#0 GGACGACCATGGACGGAGCGAGCTGCTAGGCTGACGAGAACGACCTCGGGAAGGGTGCTG 240 consensus_4988#1 --------CCGGACGGAGCGAGCTGCTAGGCTGACGAGAACGACCTCGGGAAGGGTGCTG 52 ************************************************** consensus_4988#0 GGTTCAGCCGCGCTCATCACAGTGTGGCGGAGTAGCCAGTTGTTTTCGTAATGTAAATCC 300 consensus_4988#1 GGTTCAGCCGCGCTCATCACAGTGTGGCGGAGTAGCCAGTTGTTTTCGTAATGTAAATCC 112 ************************************************************ consensus_4988#0 CAAAGCCCGTCGTCGTGTTTCGTCTCCCGTGTCACATCCGTCCTCGCACGCACGGTGCTA 360 consensus_4988#1 CAACGCCCGTCGTCGTGTTTCGTCTCCCGTGTCACATCCGTCCTCACACGCACGGTGCTA 172 *** ***************************************** ************** consensus_4988#0 GCTGTTGCTGGCGTACACAGATGAATTGCTACCTGCGTGTGACGTGAGGGTCCGTTTT-- 418 consensus_4988#1 GCTGTTGCTGGCGTACACAGATGAATTGCTTCCTGCGTGTGACGTGAGGGTCCGTTTTTT 232 ****************************** *************************** consensus_4988#0 -GTTTGCTGGCATTCGCTCGAAAGGAACAAAAAAGTGCGTCGAGGAAACGTGTGTTCGAA 477 consensus_4988#1 TGTTTGCTGGCATTCGCTCAAAAGGAA-AAAAAAGTGCGTCGAGGAAGCGTGTGTTCGAA 291 ****************** ******* ******************* ************ consensus_4988#0 CGACTATCGATCCTATCGACTGGTTGGATTGGGAGGCGGAAAGGGAACAACCGCGGCGTG 537 consensus_4988#1 CGACTATCGATCCTATCGACTGTTTGGATTGGGAGGTGGAAAGGGAAAAACGTCGGCGTG 351 ********************** ************* ********** *** ******* consensus_4988#0 CATTTAGGGCCACGCAGTATGCCTTTTCGGTGACAGAGGGCAGTTGTGAATCAGCTTACT 597 consensus_4988#1 CATTTAGGGCCACGCAGTATGCCTTT-CGGTGACAGAGG-CAGTTGTGCATCAGCTTACT 409 ************************** ************ ******** *********** consensus_4988#0 CTACAACCCGACC----GGCGGAAAAGGCAGGCNAAGCAAGGCAAGGCATTTGGATTGGA 653 consensus_4988#1 CTACCACCCCCCGCGAAGGCAGCAGCAGCAGCAGCACCATTGGATGGAGTTCCGTGTGAT 469 **** **** * *** * * **** * ** * * ** ** * ** consensus_4988#0 CAGTTTCCCGTTGGTTGATGTTGACTCCCGGGGACTNAACGGAACGGGCCAACATTAAGG 713 consensus_4988#1 GTGCTCCGGGACTAACGACGGCCAACATGAGGAACGTTCTATCGAGTGTTTACCTTTCCA 529 * * * * ** * * ** ** * * ** ** consensus_4988#0 AAACCGTGCTATTCGACAGGTGT----TACC--TTTTGCACAANAA-------------- 753 consensus_4988#1 CGAGCATACTGCACGCCTGCAGCGCTATACCGATCCCGTACGTCCATACAGGACAGCATG 589 * * * ** ** * * * **** * * ** * consensus_4988#0 ------------------------------------------------------------ consensus_4988#1 ATGCCGTGATCTTCGGGATGCTGGCCTGCCTGGGGCTCGGCTCCTTCATAATGGGGTTTT 649 consensus_4988#0 ---------- consensus_4988#1 GCATTTTCTG 659 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||