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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4995#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 886 fasta sequence
[GGCAGAATCGGCACGNNTGATCCGATGGAGTGATTTGACGCAGCAATACGAAGCCCGAAGCGCACCTGAACACACCACCCGCGCCAGTTAATGTCGATGGCTGGCATTTTAGGGGGCGAAGTAAAGGAACCTTCCCGCGACGACATGTTCGACAGAGTAAGCATTNAAAGCAACTTACAGGTNGCTTGAAAGGTTGGGAGCTTTGGCNAAAATTGCTTTCCGGGGAAATCCTTGTGGGAACCGGGGTGGTTTTTCTTGGGGCAACAGGGAACCTGGCCNAACACACCGGGGGCAGGCGAACGGTTTCGCCACGGTTGAAAAGAAAAGTTTNNCCTGGGGTTCGGACAGGGATTCTTGAAAGAAACCGGAAGCACGTTCAGGGGTTAACGGTTGGATTGGGAACGGAAGGGCGAACAAGCGCCGATTCTTGCGCCGCCGAAAGGTTTCCCCNGNAACAGCCAGATTTCCCGGGGAAGAAACGCAATTTCCTTACCTTTGGGTTAAAATGCCAAACCAAGCAACCCGGACGGGGTNTACACNGNGTTGGGGCAGACCCCAGAGNTCCNTCCCGAGGATACCTTTGGTGTNAACAGCTCTCTCTAGGTGTTGGNGNTCTTTGTGCCCACCAGGGTTNTTCAAACATTTTGGTGTTTTGGCGCGNCTTAACAACGCGGGGGTGTTCTCCCTTCTTTGTGCCCACGAGGTGTGAGNCAGCACACCGGGNAACTNNATNTGGGGNGGCCCCCACNGAGAACGTTTAAGACCGGTCTTTTCTCCGGAAGAGNAACCACCGAGCTGGTGTGGCGTTTTTTATTCTACCCCGGGGGGGGAAGAAAAACCCCGGACAGTGTGANACNTNCTTCAGGGGTNAGGTTTATGTGCGCGC]
[+] EMBL BX467875 [GGCAGAATCGGCACGNNTGATCCGATGGAGTGATTTGACGCAGCAATACGAAGCCCGAAGCGCACCTGAACACACCACCCGCGCCAGTTAATGTCGATGGCTGGCATTTTAGGGGGCGAAGTAAAGGAACCTTCCCGCGACGACATGTTCGACAGAGTAAGCATTNAAAGCAACTTACAGGTNGCTTGAAAGGTTGGGAGCTTTGGCNAAAATTGCTTTCCGGGGAAATCCTTGTGGGAACCGGGGTGGTTTTTCTTGGGGCAACAGGGAACCTGGCCNAACACACCGGGGGCAGGCGAACGGTTTCGCCACGGTTGAAAAGAAAAGTTTNNCCTGGGGTTCGGACAGGGATTCTTGAAAGAAACCGGAAGCACGTTCAGGGGTTAACGGTTGGATTGGGAACGGAAGGGCGAACAAGCGCCGATTCTTGCGCCGCCGAAAGGTTTCCCCNGNAACAGCCAGATTTCCCGGGGAAGAAACGCAATTTCCTTACCTTTGGGTTAAAATGCCAAACCAAGCAACCCGGACGGGGTNTACACNGNGTTGGGGCAGACCCCAGAGNTCCNTCCCGAGGATACCTTTGGTGTNAACAGCTCTCTCTAGGTGTTGGNGNTCTTTGTGCCCACCAGGGTTNTTCAAACATTTTGGTGTTTTGGCGCGNCTTAACAACGCGGGGGTGTTCTCCCTTCTTTGTGCCCACGAGGTGTGAGNCAGCACACCGGGNAACTNNATNTGGGGNGGCCCCCACNGAGAACGTTTAAGACCGGTCTTTTCTCCGGAAGAGNAACCACCGAGCTGGTGTGGCGTTTTTTATTCTACCCCGGGGGGGGAAGAAAAACCCCGGACAGTGTGANACNTNCTTCAGGGGTNAGGTTTATGTGCGCGC]
consensusID : consensus_4995#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 308 fasta sequence
[CCACCCGCGCCAGTTAATGTCGATGCTGCCATTTTAGGGGGCGAGTAAAGGACCCTTCCGCGACGACATGTTCGACAATAACATCAACCACTACGTGCTGAAGGTGGAGCTGGCCAAATGCTTCGGCAATCTGGGGACGGTGTTTCTGGCACAGCACCTGCCCACCCGGCAGCACGTCGCGGTGAAGAAGTTCCTGGTCGAGGATCTGAAGAACGACATCAGCTACGTGATGGACGAGGCGAAGCATCTGCGCGAGTTCGACCATCCGAACATCCTCTGCTACCACACCGCGTTCGTGCACCATCTCC]
[+] EMBL AGA285513 [CCACCCGCGCCAGTTAATGTCGATGCTGCCATTTTAGGGGGCGAGTAAAGGACCCTTCCGCGACGACATGTTCGACAATAACATCAACCACTACGTGCTGAAGGTGGAGCTGGCCAAATGCTTCGGCAATCTGGGGACGGTGTTTCTGGCACAGCACCTGCCCACCCGGCAGCACGTCGCGGTGAAGAAGTTCCTGGTCGAGGATCTGAAGAACGACATCAGCTACGTGATGGACGAGGCGAAGCATCTGCGCGAGTTCGACCATCCGAACATCCTCTGCTACCACACCGCGTTCGTGCACCATCTCC]
[+] EMBL AGA284890 [CCACCCGCGCCAGTTAATGTCGATGCTGCCATTTTAGGGGGCGAGTAAAGGACCCTTCCGCGACGACATGTTCGACAATAACATCAACCACTACGTGCTGAAGGTGGAGCTGGCCAAATGCTTCGGCAATCTGGGGACGGTGTTTCTGGCACAGCACCTGCCCACCCGGCAGCACGTCGCGGTGAAGAAGTTCCTGGTCGAGGATCTGAAGAACGACATCAGCTACGTGATGGAC ]
consensusID : consensus_4995#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 156 fasta sequence
[GGCACNHNBCGAAGCCCGAAGCGCACCGAACACACCACCCGCGCCAGTTWAATGTCGATGCTGCCATTTTGGGGGCGTAGTAAAGGACCCTCGCCGACGAACGAACATTGTTVCGAACAATAAWCATACACACMCATCTGAGCGTGGCTAGAAGGG]
[+] EMBL AGA282932 [GGCACNHNBCGAAGCCCGAAGCGCACCGAACACACCACCCGCGCCAGTTWAATGTCGATGCTGCCATTTTGGGGGCGTAGTAAAGGACCCTCGCCGACGAACGAACATTGTTVCGAACAATAAWCATACACACMCATCTGAGCGTGGCTAGAAGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_4995#0 GGCAGAATCGGCACGNNTGATCCGATGGAGTGATTTGACGCAGCAATACGAAGCCCGAAG 60
consensus_4995#2 ---------------------------------------GGCACNHNBCGAAGCCCGAAG 21
consensus_4995#1 ------------------------------------------------------------
consensus_4995#0 CGCACCTGAACACACCACCCGCGCCAGTTAA-TGTCGATGGCTGGCATTTTAGGGGGCGA 119
consensus_4995#2 CGCACC-GAACACACCACCCGCGCCAGTTWAATGTCGATG-CTGCCATTTT-GGGGGCGT 78
consensus_4995#1 --------------CCACCCGCGCCAGTTAA-TGTCGATG-CTGCCATTTTAGGGGGCG- 43
*************** * ******** *** ****** *******
consensus_4995#0 AGTAAAGGAACCTTCCCG-CGAC--GACAT-GTTCGACAGAGTAAGCATTNAAAGCAACT 175
consensus_4995#2 AGTAAAGGACCCTCGCCGACGAACGAACATTGTTVCGAACAATAAWCATACACACMCATC 138
consensus_4995#1 AGTAAAGGACCCTTCCG--CGAC--GACAT-GTTCGACAATAACATCAACCACTACGTGC 98
********* *** * *** **** *** * * ** *
consensus_4995#0 TACAGGTNG--CTTG---AAAGGTTGGGAGCTTTGGCNAAAATTGCTTTCCGGGGAAATC 230
consensus_4995#2 TGAGCGTGG--CTAG---AAGGG------------------------------------- 156
consensus_4995#1 TGAAGGTGGAGCTGGCCAAATGCTTCGGCAATCTGGGGACGGT--GTTTCTGGCACAGCA 156
* ** * ** * ** *
consensus_4995#0 CTTGTGGGAACCGGGGTGGTTTTTCTTGGGGCAACAGGGAACCTGGCCNAACACACCGGG 290
consensus_4995#2 ------------------------------------------------------------
consensus_4995#1 CCTGCCCACCCGGCAGCA-----CGTCGCGGTGAAGAAGTTCCTGGTCGAGGAT--CTGA 209
consensus_4995#0 GGCAGGCGAACGGTTTCGCCACGGTTGAAAAGAAAAGTTTNNCCTGGGGTTCGGACAGGG 350
consensus_4995#2 ------------------------------------------------------------
consensus_4995#1 AGAACGACATCAGCTACGTGATGGACGAGGCGAAGCATCTGCGC--GAGTTCGACCATCC 267
consensus_4995#0 ATTCTTGAAAGAAACCGGAAGCACGTTCAGGGGTTAACGGTTGGATTGGGAACGGAAGGG 410
consensus_4995#2 ------------------------------------------------------------
consensus_4995#1 GAACATCCTCTGCTACCACACCGCGTTCGTGCACCATCTCC------------------- 308
consensus_4995#0 CGAACAAGCGCCGATTCTTGCGCCGCCGAAAGGTTTCCCCNGNAACAGCCAGATTTCCCG 470
consensus_4995#2 ------------------------------------------------------------
consensus_4995#1 ------------------------------------------------------------
consensus_4995#0 GGGAAGAAACGCAATTTCCTTACCTTTGGGTTAAAATGCCAAACCAAGCAACCCGGACGG 530
consensus_4995#2 ------------------------------------------------------------
consensus_4995#1 ------------------------------------------------------------
consensus_4995#0 GGTNTACACNGNGTTGGGGCAGACCCCAGAGNTCCNTCCCGAGGATACCTTTGGTGTNAA 590
consensus_4995#2 ------------------------------------------------------------
consensus_4995#1 ------------------------------------------------------------
consensus_4995#0 CAGCTCTCTCTAGGTGTTGGNGNTCTTTGTGCCCACCAGGGTTNTTCAAACATTTTGGTG 650
consensus_4995#2 ------------------------------------------------------------
consensus_4995#1 ------------------------------------------------------------
consensus_4995#0 TTTTGGCGCGNCTTAACAACGCGGGGGTGTTCTCCCTTCTTTGTGCCCACGAGGTGTGAG 710
consensus_4995#2 ------------------------------------------------------------
consensus_4995#1 ------------------------------------------------------------
consensus_4995#0 NCAGCACACCGGGNAACTNNATNTGGGGNGGCCCCCACNGAGAACGTTTAAGACCGGTCT 770
consensus_4995#2 ------------------------------------------------------------
consensus_4995#1 ------------------------------------------------------------
consensus_4995#0 TTTCTCCGGAAGAGNAACCACCGAGCTGGTGTGGCGTTTTTTATTCTACCCCGGGGGGGG 830
consensus_4995#2 ------------------------------------------------------------
consensus_4995#1 ------------------------------------------------------------
consensus_4995#0 AAGAAAAACCCCGGACAGTGTGANACNTNCTTCAGGGGTNAGGTTTATGTGCGCGC 886
consensus_4995#2 --------------------------------------------------------
consensus_4995#1 --------------------------------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||