These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_4999#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 846 fasta sequence [CCGGCAGTTTTAAAACATATCAAAACTCGATGCGTACTCGCAGCAACACAGCAAACAAGCAAACAGAGAAACGACTTCGTTTCGTTAGCTATTTAACTCCCTCTTTCAAGCAAAAAA---GGCCAATAGCA-----ACCTTACACTCTAACATCATTTATGTTTCCACTTGTTGCCACTTTGTTGCGTGTGCCGTTCGTTTTCTTTTCTTTCTTCTTCTTATTGTAATCCTGAACGTATAGAGAGTAGGTTGAACGCGATCGTTATAGTTTATAGCATTGTTAAACCTTTAAAAGTGAAAAAGGTGAACGAATAGTCCCCACAGCTCCCTAAAACAAAGTGATCTTCCCATGTGTCTTGCCTTCTTTTTTTTTAAAGTGTATTTTTGGTTTTTAATAATACAATTCGCTTCTCCCCCTCCTGTTCCTGTTTGA-TTGATAGGCTAGTTTTAATTAGAACGAGAAAGAGGAAATGGAGCGAAATAAAATAAAAAAGCAAAAGAAGTAAACATACACACACACATATACAAGCCTAATCAAAAAGTAGGTATAAAGAGATTGAAATAATGGAAGTAAGAAGAAGGAAAGAAAGGAAAGTAGAAATAAATGGAATTTGTTTNTAAATATACAAATAGAAGATAGCAAAACAAAACAAAGGAAACATATCACACACACACATACAACGCGACACATATTCGCACTGCGGTCTTCCCCACTATCTAATGGGATGGGAAGCAAAAACAGCTAAACTGTTGTTACATATATGTGTGTGTATGTGTCGGTGTGTGTCAGACAAACAATGATTAATTTTAGTCTTATCTATGTATTTACCTAATTAAATATATTGCCGTTAATT] [+] EMBL BM646572 [CCGGCAGTTTTAAAACATATCAAAACTCGATGCGTACTCGCAGCAACACAGCAAACAAGCAAACAGAGAAACGACTTCGTTTCGTTAGCTATTTAACTCCCTCTTTCAAGCAAAAAAAAGGGCCAATAGCAAAGGTACCTTACGCTCTAACATCATTTATGTTTCCACATGTTGCCACTTTGTTGCGTGTGCCGTTCGTTCTCTTTTCCTTCTTCTTCTTATTGTAATCCTGACCTTATAGATTGTAGGTTGAACGCGATCGTTATAGTTTATAGCATTGTTAAACCTTTAAAAGTGGAAAAGGTGAACGAATAGTCCCCACAGCTCCCTAAAACAAAGTGATCTTCCCATGTGTCTTGCCTTCTTTTTTTTTAAA TGTATTTTTGGTTTTTAATAATACAATTCGCTTCTCCCCCTCCTGTTCCTGTTTGATTTGATAGGCTAGTTTT ] [+] EMBL BX628316 [ AAACGACTTCGTTTCGTTAGCTATTTAACTCCCTCTTTCAAGCAAAAAA GCCCAAAAGCA ACCTTACACTCTAACATCATTTATGTTTCCACTTGTTGCCACTTTGTTGCGTGTGCCGTTCGTTTTCTTTTCTTTCTTCTTCTTATTGTAATCCTNAACGTATAGAGAGTAGGTTGAACGCGATCGTTATAGTTTATAGCATTGTTAAACCTTTAAAAGTGAAAAAGGTGAACGAATAGTCCCCACAGCTCCCTAAAACAAAGTGATCTTCCCATGTGTCTTGCCTTCTTTTTTTTTAAAGTGTATTTTTGGTTTTTAATAATACAATTCGCTTCTCCCCCTCCTGTTCCTGTTNCA TTGATAGGCTAGTTTTAATTAGAACGAGAAAGAGGAAATGGAGCGAAATAAAATAAAAAAGCAAAAGAAGTAAACATACACACACACATATACAAGCCTAATCAAAAAGTAGGTATAAAGAGATTGAAATAATGGAAGTAAGAAGAAGGAAAGAAAGGAAAGTAGAAATAAATGGAATTTGTTTNTAAATATACAAATAGAAGATAGCAAAACAAAACAAAGGAAACATATCACACACACACATACAACGCGACACATATTCGCACTGCGGTCTTCCCCACTATCTAATGGGATGGGAAGCAAAAACAGCTAAACTGTTGTTACATATATGTGTGTGTATGTGTCGGTGTGTGTCAGACAAACAATGATTAATTTTAGTCTTATCTATGTATTTACCTAATTAAATATATTGCCGTTAATT] [+] EMBL BX623681 [ ACCTTACACTCTAACATCATTTATGTTTCCACTTGTTGCCACTTTGTTGCGTGTGCCGTTCGTTTTCTTTTCTTTCTTCTTCTTATTGTAATCCTGAACGTATAGAGAGTAGGTTGAACGCGATCGTTATAGTTTATAGCATTGTTAAACCTTTAAAAGTGAAAAAGGTGAACGAATAGTCCCCACAGCTCCCTAAAACAAAGTGATCTTCCCATGTGTCTTGCCTTCTTTTTTTTTAAAGTGTATTTTTGGTTTTTAATAATACAATTCGCTTCTCCCCCTCCTGTTCCTGTTTGA TTGATAGGCTAGTTTTAATTAGAACGAGAAAGAGGAAATGGAGCGAAATAAAATAAAAAAGCAAAAGAAGTAAACATACACACACACATATACAAGCCTAATCAAAAAGTAGGTATAAAGAGATTGAAATAATGGAAGTAAGAAGAAGGAAAGAAAGGAAAGTAGAAATAAATGGAATTTGTTT TAAATATACAAATAGAAGATAGCAAAACCAAACAAAGGAAACATATCACACACACACATACNACGCGACACATATTCGCACTGCGGTCTTNCCCACTATCTAATGGGATGGGAAGCAAAAc ] consensusID : consensus_4999#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [TGTGCCGTTCGTTCTCTTTTCTTTCTTCTTCTTATTGTAATCCTGAACTTATAGAGAGTAGGCTGAACGCGATCGTTATAGTTTATATCATTGTTAAACCTTTAAAAGTGGAAAAGGTGAACGAATAGTCCCCACAGCTCCCTAAAACAAAAAAAAAAAAAACAAAACAAACAAACAAGAACAGAAAACTTAACCAAGCTCAGTCATTTGCACAACAACAAAAAAACGTAATGCCAAAAGAAGAAATGAAGTAGCTAAACGTACATTTAAAAGAAAACTAAAGGAATAGATGATAAAAGTCTATGTTTAAAAAATCGTAACATTAACATTTTAAAATGCCAAAACCCTTACTAAAAAAACATGCAATGATGCTAAACATTTGTTAACATGTATAAGAAAGATGTGGAAACTTAGAGTAAACAAAACAAAACCAAACCAAACAAAACAAAACCACAACCCAAGTGTGTGTGCGTGTGTGTGTGGTCGTAAGGTGTGAGTGTATGCGTGGTGGAGGTGTTGGTTGGTTGGAGCAGGAGGAGCAGGAGGAGCAAACAAGGATAACAAAATATACAGCCAGTCATTATATTGATTATGTATGAAAACAAACTG] [+] EMBL BX615073 [TGTGCCGTTCGTTCTCTTTTCTTTCTTCTTCTTATTGTAATCCTGAACTTATAGAGAGTAGGCTGAACGCGATCGTTATAGTTTATATCATTGTTAAACCTTTAAAAGTGGAAAAGGTGAACGAATAGTCCCCACAGCTCCCTAAAACAAAAAAAAAAAAAACAAAACAAACAAACAAGAACAGAAAACTTAACCAAGCTCAGTCATTTGCACAACAACAAAAAAACGTAATGCCAAAAGAAGAAATGAAGTAGCTAAACGTACATTTAAAAGAAAACTAAAGGAATAGATGATAAAAGTCTATGTTTAAAAAATCGTAACATTAACATTTTAAAATGCCAAAACCCTTACTAAAAAAACATGCAATGATGCTAAACATTTGTTAACATGTATAAGAAAGATGTGGAAACTTAGAGTAAACAAAACAAAACCAAACCAAACAAAACAAAACCACAACCCAAGTGTGTGTGCGTGTGTGTGTGGTCGTAAGGTGTGAGTGTATGCGTGGTGGAGGTGTTGGTTGGTTGGAGCAGGAGGAGCAGGAGGAGCAAACAAGGATAACAAAATATACAGCCAGTCATTATATTGATTATGTATGAAAACAAACTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_4999#0 CCGGCAGTTTTAAAACATATCAAAACTCGATGCGTACTCGCAGCAACACAGCAAACAAGC 60 consensus_4999#1 ------------------------------------------------------------ consensus_4999#0 AAACAGAGAAACGACTTCGTTTCGTTAGCTATTTAACTCCCTCTTTCAAGCAAAAAAGGC 120 consensus_4999#1 ------------------------------------------------------------ consensus_4999#0 CAATAGCAACCTTACACTCTAACATCATTTATGTTTCCACTTGTTGCCACTTTGTTGCGT 180 consensus_4999#1 -----------------------------------------------------------T 1 * consensus_4999#0 GTGCCGTTCGTTTTCTTTTCTTTCTTCTTCTTATTGTAATCCTGAACGTATAGAGAGTAG 240 consensus_4999#1 GTGCCGTTCGTTCTCTTTTCTTTCTTCTTCTTATTGTAATCCTGAACTTATAGAGAGTAG 61 ************ ********************************** ************ consensus_4999#0 GTTGAACGCGATCGTTATAGTTTATAGCATTGTTAAACCTTTAAAAGTGAAAAAGGTGAA 300 consensus_4999#1 GCTGAACGCGATCGTTATAGTTTATATCATTGTTAAACCTTTAAAAGTGGAAAAGGTGAA 121 * ************************ ********************** ********** consensus_4999#0 CGAATAGTCCCCACAGCTCCCTAAAACAAAGTGATCTTCCCATGTGTCTTGCCTTCTTTT 360 consensus_4999#1 CGAATAGTCCCCACAGCTCCCTAAAACAAAAAAAA------------------------- 156 ****************************** * consensus_4999#0 TTTTTAAAGTGTATTTTTGGTTTTTAATAATACAATTCGCTTCTCCCCCTCCTGTTCCTG 420 consensus_4999#1 -----AAAAAACAAAACAAACAAACAAGAACAGAAA--ACTTAACCAAGCTCAGTC---A 206 *** * ** ** * ** *** ** * ** consensus_4999#0 TTTGATTGATAGGCTAGTTTTAATTAGAACGAGAAAGAGGAAATGGAGCGAAATAAAATA 480 consensus_4999#1 TTTGCACAACAA--CAAAAAAACGTAATGCCA-AAAGAAGAAATGAAGTAGCTAAACGTA 263 **** * * * * ** * * ***** ****** ** ** ** consensus_4999#0 AAAAAGCAAAAGAAGTAAACATACACACACACATATACAAGCCTAA--TCAAAAAGTAGG 538 consensus_4999#1 CATTTAAAAGAAAACTAAAGGAATAGATG-----ATAAAAGTCTATGTTTAAAAAATCGT 318 * ** * ** **** * * * *** *** *** * ***** * * consensus_4999#0 TATAAAGAGATTGAAATAATGGAAGTAAGAAGAAGGAAAGAAAGGAAAGTAGAAATAAAT 598 consensus_4999#1 AACATTAACATTTTAA-AATGCCAAAACCCTTACTAAAAAAACATGCAATGATGCTAAAC 377 * * * *** ** **** * * * *** ** * * **** consensus_4999#0 GGAATTTGTTTNTAAATATACAAATAGAAGATAGCAAAACAAAACAAAGGAAACATATCA 658 consensus_4999#1 ---ATTTGTTAAC--ATGTATAAGAAAGATGTGGAAACTTAGAGTAAACAAAACAAAAC- 431 ******* ** ** ** * * * * ** * * *** ***** * * consensus_4999#0 CACACACACATACAACGCGACACATATTCGCAC-TGCGGTCTTCCCCACTATCTAATGGG 717 consensus_4999#1 CAAAC-CAAACAAAACAAAACCACAACCCAAGTGTGTGTGCGTGTGTGTGTGGTCGTAAG 490 ** ** ** * * *** ** * * ** * * * * * * consensus_4999#0 ATGGGAA-GCAAAAACAGCTAAACTGTTGTTACATATATGTGTGTGTATGTGTCGGTGTG 776 consensus_4999#1 GTGTGAGTGTATGCGTGGTGGAGGTGTTGGTTGGTTGGAGCAGGAGGAGCAGGAGGAGCA 550 ** ** * * * * ***** * * * * * * * ** * consensus_4999#0 TGTCAGACAAACAATGATTAATTTTAGTCTTATCTATGTATTTACCTAATTAAATATATT 836 consensus_4999#1 AACAAGGATAACAAAATATACAGCCAGTCAT-TATAT-TGATTATGTATGAAAACAAACT 608 ** ***** ** **** * * *** * *** ** *** * * * consensus_4999#0 GCCGTTAATT 846 consensus_4999#1 G--------- 609 * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||