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Anopheles gambiae
cluster # 5002 cluster # 5002       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5002#0 length = 1048 sequences # 3  
consensus_5002#1 length = 485 sequences # 1  

consensusID : consensus_5002#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1048
fasta sequence
                              [ATTAATCAGTTCTGCAAATTGGTCTTCTCATCATCGCTGTCGGAAATGGCCAGATCCGAGTGTAGCGTTTGCAGCGTCGGAAGGGCAGCAGGTGGCTGGGATGGATTGTCCATCGACTGACCAGTCGGGTCGGGTTGATACTGAAATTGCTGCTGCTGCTGCTGCTGCTGGTCGTTGGCTTCCTGTCTGCCAGCTTCTTGAGAGTATTCGCTGCTAGGAGCGTTCTGATCCACGGAATAGCTTGCTTCCGAAGATTGTTGAATACCTGCGTCGTTGCGTCCTGAGTCACCTGTCTGCTGCCGGCTGGACATGCCTAAGAAATCACTCGGATCGTAGTTGGGGTCGATCTCCATGGATTCAAAAAGGGCCGAGTTGTAGTACTGTGCACTGCTGAGCTGAACCATCGCCTCTGCTGCTTGCTGGCTGTCGTCCTCGCTTTGCGGAGGCATCATACTGGAGGTCGTGTTCGACTGCTCCAGCGTTACAGAGACGCCTTCATTATCGCTTGTGCCCACTTCCTCAAACTCTTCATCATCCGTTGAATATTGATGACCTGCTCGTTTTTGTGCAGTGGCCAACCGAATGGGTTGGAAGGTGGATTGGTTTCGTGCGTCATAGCCAAAGCTATCCGGAAGTAGCGAAGACTGCGATTCGTTAAACCCGGCCGAAATGGCACCGCCACCGCCGTACTCATTTCCGTACTGGTTCGGGAAACTACCGTACCCGGAAGATGGTCCTGGCATTTCGTCATAGTTGTCCGCACCCAGATTCATCCAGTTCATTTCGTATGCCGAAGCAGCTACGTTAGGATGCATCATCTGCGAGCTCTCGGGCACTGTGCTACTGCTGCTACGGGAAATTGCACGCGGTGCCTCCGTGTTGCCCACAAAACCCGCCATTCCACCCACATTCGAACCGAGCTTCGGCCCAGGGCGGTAATATGAAGGAATGGCATTCGGTCGAACGATTGGGAAAGGCATTGCCGACTCGGAATAGGCCGTACCGTACGGTCGGCGGGCAAAATCATCGTCCTTGGCGGTAGGAATGT]

[+] EMBL CNS08DUB             [ATTAATCAGTTCTGCAAATTGGTCTTCTCATCATCGCTGTCGGAAATGGCCAGATCCGAGTGTAGCGTTTGCAGCGTCGGAAGGGCAGCAGGTGGCTGGGATGGATTGTCCATCGACTGACCAGTCGGGTCGGGTTGATACTGAAATTGCTGCTGCTGCTGCTGCTGCTGGTCGTTGGCTTCCTGTCTGCCAGCTTCTTGAGAGTATTCGCTGCTAGGAGCGTTCTGATCCACGGAATAGCTTGCTTCCGAAGATTGTTGAATACCTGCGTCGTTGCGTCCTGAGTCACCTGTCTGCTGCCGGCTGGACATGCCTAAGAAATCACTCGGATCGTAGTTGGGGTCGATCTCCATGGATTCAAAAAGGGCCGAGTTGTAGTACTGTGCACTGCTGAGCTGAACCATCGCCTCTGCTGCTTGCTGGCTGTCGTCCTCGCTTTGCGGAGGCATCATACTGGAGGTCGTGTTCGACTGCTCCAGCGTTACAGAGACGCCTTCATTATCGCTTGTGCCCACTTCCTCAAACTCTTCATCATCCGTTGAATATTGATGACCTGCTCGTTTTTGTGCAGTGGCCAACCGAATGGGTTGGAAGGTGGATTGGTTTCGTGCGTCATAGCCAAAGCTATCCGGAAGTAGCGAAGACTGCGATTCGTTAAACCCGGCCGAAATGGCACCGCCACCGCCGTACTCATTTCCGTACTGGTTCGGGAAACTACCGTACCCGGAAGATGGTCCTGGCATTTCGTCATAGTTGTCCGCACCCAGATTCATCCAGTTCATTTCGTATGCCGAAGCAGCTACGTTAGGATGCATCATCTGCGAGCTCTCGGGCACTGTGCTACTGCTGCTACGGGAAATTGCACGCGGTGCCTCCGTGTTGCCCACAAAACCCGCCATTCCACCCACATTCGAACC                                                                                                                                   ]
[-] EMBL CNS08DUA             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ggggggGCAGTGGCCAACCGAATGGGTTGGAAGGTGGATTGGTTTCGTGCGTCATAGCCAAAGCTATCCGGAAGTAGCGAAGACTGCGATTCGTTAAACCCGGCCGAAATGGCACCGCCACCGCCTTTCTCATTTCCGTACTGGTTCGGGAAACTACCGTACCCGGAAGATGGTCCTGGCATTTCGTCATAGTTGTCCGCACCCAGATTCATCCAGTTCATTTCGTATGCCGAAGCAGCTACGTTAGGATGCATCATCTGCGAGCTCTCGGGCACTGTGCTACTGCTGCTACGGGAAATTGCACGCGGTGCCTCCGTGTTGCCCACAAAACCCGCCATTCCACCCACATTCGAACCGAGCTTCGGCCCAGGGCGGTAATATGAAGGAATGGCATTCGGTCGAACGATTGGGAAAGGCATTGCCGACTCGGAATAGGCCGTACCGTACGGTCGGCGGGCAAAATCATCGTCCTTGGCGGTAGGAATGT]
[-] EMBL CNS08WR8             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ACTCATTTCCGTACTGGTTCGGGAAACTACCGTACCCGGAAGATGGTCCTGGCATTTCGTCATAGTTGTCCGCACCCAGATTCATCCAGTTCATTTCGTATGCCGAAGCAGCTACGTTAGGATGCATCATCTGCGAGCTCTCGGGCACTGTGCTACTGCTGCTACGGGAAATTGCACGCGGTGCCTCCGTGTTGCCCACAAAACCCGCCATTCCACCCACATTCGAACCGAGCTTCGGCCCAGGGCGGTGATATGAAGGAATGGCATTCGGTCGAACGATTGGGAAAGGCATTGCCGACTCGGAATAGGCCGTAC                                             ]


>consensus_5002#0 ATTAATCAGTTCTGCAAATTGGTCTTCTCATCATCGCTGTCGGAAATGGCCAGATCCGAG TGTAGCGTTTGCAGCGTCGGAAGGGCAGCAGGTGGCTGGGATGGATTGTCCATCGACTGA CCAGTCGGGTCGGGTTGATACTGAAATTGCTGCTGCTGCTGCTGCTGCTGGTCGTTGGCT TCCTGTCTGCCAGCTTCTTGAGAGTATTCGCTGCTAGGAGCGTTCTGATCCACGGAATAG CTTGCTTCCGAAGATTGTTGAATACCTGCGTCGTTGCGTCCTGAGTCACCTGTCTGCTGC CGGCTGGACATGCCTAAGAAATCACTCGGATCGTAGTTGGGGTCGATCTCCATGGATTCA AAAAGGGCCGAGTTGTAGTACTGTGCACTGCTGAGCTGAACCATCGCCTCTGCTGCTTGC TGGCTGTCGTCCTCGCTTTGCGGAGGCATCATACTGGAGGTCGTGTTCGACTGCTCCAGC GTTACAGAGACGCCTTCATTATCGCTTGTGCCCACTTCCTCAAACTCTTCATCATCCGTT GAATATTGATGACCTGCTCGTTTTTGTGCAGTGGCCAACCGAATGGGTTGGAAGGTGGAT TGGTTTCGTGCGTCATAGCCAAAGCTATCCGGAAGTAGCGAAGACTGCGATTCGTTAAAC CCGGCCGAAATGGCACCGCCACCGCCGTACTCATTTCCGTACTGGTTCGGGAAACTACCG TACCCGGAAGATGGTCCTGGCATTTCGTCATAGTTGTCCGCACCCAGATTCATCCAGTTC ATTTCGTATGCCGAAGCAGCTACGTTAGGATGCATCATCTGCGAGCTCTCGGGCACTGTG CTACTGCTGCTACGGGAAATTGCACGCGGTGCCTCCGTGTTGCCCACAAAACCCGCCATT CCACCCACATTCGAACCGAGCTTCGGCCCAGGGCGGTAATATGAAGGAATGGCATTCGGT CGAACGATTGGGAAAGGCATTGCCGACTCGGAATAGGCCGTACCGTACGGTCGGCGGGCA AAATCATCGTCCTTGGCGGTAGGAATGT



consensusID : consensus_5002#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 485
fasta sequence
                              [TATTTCTGTACTTCACTATATATCCACCTAAACATAACATATCCGCATTTAGAACCAAAGATCACCACCCTCATCGTTATCATCGTTATCGTCTCGCACCTCATCCGACCGCAAATTGGTCTTCTCATCATCGCTGTCGGAAATGGCCAGATCCGAGTGTAGCGTTTGCAGCGTCGGAAGGGCAGCAGGTGGCTGGGATGGATTGTCCATCGACTGACCAGTCGGGTCGGGTTGATACTGAAATTGCTGCTGCTGCTGCTGCTGCTGGTCGTTGGCTTCCTGTCTGCCAGCTTCTTGAGAGTATTCGCTGCTAGGAGCGTTCTGATCCACGGAATAGCTTGCTTCCGAAGATTGTTGAATACCTGCGTCGTTGCGTCCTGAGTCACCTGTCTGCTGCCGGCTGGACATGCCTAAGAAATCACTCGGATCGTAGTTGGGGGCGATCTCCATGGATTCATCCTGGGCCGAGTTGTAGTACTGTGCAC]

[+] EMBL CNS08WR9             [TATTTCTGTACTTCACTATATATCCACCTAAACATAACATATCCGCATTTAGAACCAAAGATCACCACCCTCATCGTTATCATCGTTATCGTCTCGCACCTCATCCGACCGCAAATTGGTCTTCTCATCATCGCTGTCGGAAATGGCCAGATCCGAGTGTAGCGTTTGCAGCGTCGGAAGGGCAGCAGGTGGCTGGGATGGATTGTCCATCGACTGACCAGTCGGGTCGGGTTGATACTGAAATTGCTGCTGCTGCTGCTGCTGCTGGTCGTTGGCTTCCTGTCTGCCAGCTTCTTGAGAGTATTCGCTGCTAGGAGCGTTCTGATCCACGGAATAGCTTGCTTCCGAAGATTGTTGAATACCTGCGTCGTTGCGTCCTGAGTCACCTGTCTGCTGCCGGCTGGACATGCCTAAGAAATCACTCGGATCGTAGTTGGGGGCGATCTCCATGGATTCATCCTGGGCCGAGTTGTAGTACTGTGCAC]


>consensus_5002#1 TATTTCTGTACTTCACTATATATCCACCTAAACATAACATATCCGCATTTAGAACCAAAG ATCACCACCCTCATCGTTATCATCGTTATCGTCTCGCACCTCATCCGACCGCAAATTGGT CTTCTCATCATCGCTGTCGGAAATGGCCAGATCCGAGTGTAGCGTTTGCAGCGTCGGAAG GGCAGCAGGTGGCTGGGATGGATTGTCCATCGACTGACCAGTCGGGTCGGGTTGATACTG AAATTGCTGCTGCTGCTGCTGCTGCTGGTCGTTGGCTTCCTGTCTGCCAGCTTCTTGAGA GTATTCGCTGCTAGGAGCGTTCTGATCCACGGAATAGCTTGCTTCCGAAGATTGTTGAAT ACCTGCGTCGTTGCGTCCTGAGTCACCTGTCTGCTGCCGGCTGGACATGCCTAAGAAATC ACTCGGATCGTAGTTGGGGGCGATCTCCATGGATTCATCCTGGGCCGAGTTGTAGTACTG TGCAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5002#0      ------------------------------------------------------------
consensus_5002#1      TATTTCTGTACTTCACTATATATCCACCTAAACATAACATATCCGCATTTAGAACCAAAG 60
                                                                                  

consensus_5002#0      --------------------------------------ATTAATCAGTTCTGCAAATTGG 22
consensus_5002#1      ATCACCACCCTCATCGTTATCATCGTTATCGTCTCGCACCTCATCCGACC-GCAAATTGG 119
                                                              * *** *  * *********

consensus_5002#0      TCTTCTCATCATCGCTGTCGGAAATGGCCAGATCCGAGTGTAGCGTTTGCAGCGTCGGAA 82
consensus_5002#1      TCTTCTCATCATCGCTGTCGGAAATGGCCAGATCCGAGTGTAGCGTTTGCAGCGTCGGAA 179
                      ************************************************************

consensus_5002#0      GGGCAGCAGGTGGCTGGGATGGATTGTCCATCGACTGACCAGTCGGGTCGGGTTGATACT 142
consensus_5002#1      GGGCAGCAGGTGGCTGGGATGGATTGTCCATCGACTGACCAGTCGGGTCGGGTTGATACT 239
                      ************************************************************

consensus_5002#0      GAAATTGCTGCTGCTGCTGCTGCTGCTGGTCGTTGGCTTCCTGTCTGCCAGCTTCTTGAG 202
consensus_5002#1      GAAATTGCTGCTGCTGCTGCTGCTGCTGGTCGTTGGCTTCCTGTCTGCCAGCTTCTTGAG 299
                      ************************************************************

consensus_5002#0      AGTATTCGCTGCTAGGAGCGTTCTGATCCACGGAATAGCTTGCTTCCGAAGATTGTTGAA 262
consensus_5002#1      AGTATTCGCTGCTAGGAGCGTTCTGATCCACGGAATAGCTTGCTTCCGAAGATTGTTGAA 359
                      ************************************************************

consensus_5002#0      TACCTGCGTCGTTGCGTCCTGAGTCACCTGTCTGCTGCCGGCTGGACATGCCTAAGAAAT 322
consensus_5002#1      TACCTGCGTCGTTGCGTCCTGAGTCACCTGTCTGCTGCCGGCTGGACATGCCTAAGAAAT 419
                      ************************************************************

consensus_5002#0      CACTCGGATCGTAGTTGGGGTCGATCTCCATGGATTCAAAAAGGGCCGAGTTGTAGTACT 382
consensus_5002#1      CACTCGGATCGTAGTTGGGGGCGATCTCCATGGATTCATCCTGGGCCGAGTTGTAGTACT 479
                      ******************** *****************    ******************

consensus_5002#0      GTGCACTGCTGAGCTGAACCATCGCCTCTGCTGCTTGCTGGCTGTCGTCCTCGCTTTGCG 442
consensus_5002#1      GTGCAC------------------------------------------------------ 485
                      ******                                                      

consensus_5002#0      GAGGCATCATACTGGAGGTCGTGTTCGACTGCTCCAGCGTTACAGAGACGCCTTCATTAT 502
consensus_5002#1      ------------------------------------------------------------
                                                                                  

consensus_5002#0      CGCTTGTGCCCACTTCCTCAAACTCTTCATCATCCGTTGAATATTGATGACCTGCTCGTT 562
consensus_5002#1      ------------------------------------------------------------
                                                                                  

consensus_5002#0      TTTGTGCAGTGGCCAACCGAATGGGTTGGAAGGTGGATTGGTTTCGTGCGTCATAGCCAA 622
consensus_5002#1      ------------------------------------------------------------
                                                                                  

consensus_5002#0      AGCTATCCGGAAGTAGCGAAGACTGCGATTCGTTAAACCCGGCCGAAATGGCACCGCCAC 682
consensus_5002#1      ------------------------------------------------------------
                                                                                  

consensus_5002#0      CGCCGTACTCATTTCCGTACTGGTTCGGGAAACTACCGTACCCGGAAGATGGTCCTGGCA 742
consensus_5002#1      ------------------------------------------------------------
                                                                                  

consensus_5002#0      TTTCGTCATAGTTGTCCGCACCCAGATTCATCCAGTTCATTTCGTATGCCGAAGCAGCTA 802
consensus_5002#1      ------------------------------------------------------------
                                                                                  

consensus_5002#0      CGTTAGGATGCATCATCTGCGAGCTCTCGGGCACTGTGCTACTGCTGCTACGGGAAATTG 862
consensus_5002#1      ------------------------------------------------------------
                                                                                  

consensus_5002#0      CACGCGGTGCCTCCGTGTTGCCCACAAAACCCGCCATTCCACCCACATTCGAACCGAGCT 922
consensus_5002#1      ------------------------------------------------------------
                                                                                  

consensus_5002#0      TCGGCCCAGGGCGGTAATATGAAGGAATGGCATTCGGTCGAACGATTGGGAAAGGCATTG 982
consensus_5002#1      ------------------------------------------------------------
                                                                                  

consensus_5002#0      CCGACTCGGAATAGGCCGTACCGTACGGTCGGCGGGCAAAATCATCGTCCTTGGCGGTAG 1042
consensus_5002#1      ------------------------------------------------------------
                                                                                  

consensus_5002#0      GAATGT 1048
consensus_5002#1      ------
                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)