These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5007#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 760 fasta sequence [TGCTTCTCCCGACAACATGCTGCAGCAAAATGCCCTTGCGAGAAACGATGCCAAGTATGCTCCAAGAAACACCATACGATGCTGCATGTCGAAAGCAATGGGAGTGAGAAGTAACTATCAGGTTATCATCGCACCCCATTCACCATGCCCATTCGTTCCTGCTTCGTGTCGCTCCGTGATCGCATCTGCTCCGGTCCTCATCGTTCCTGAGCGGTGCTATGTTCCTGCTTCGTGCCGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATCGCACTGTGCCATCCAGTGACTGCACCGTGTGACCTCGCACCTGCTCCGGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGCACCGTGTGACCTCGCACCTGCTCCGGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGCCGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGCACCGTGCGACCTCGCACCTGCTCCGGTCCTCATCTTTCCTGAGCGGNGCTATGTTCCTGCTTCGTGCCGCTCCGTGATTGCACCTGCT] [+] EMBL BX623159 [TGCTTCTCCCGACAACATGCTGCAGCAAAATGCCCTTGCGAGAAACGATGCCAAGTATGCTCCAAGAAACACCATACGATGCTGCATGTCGAAAGCAATGGGAGTGAGAAGTAACTATCAGGTTATCATCGCACCCCATTCACCATGCCCATTCGTTCCTGCTTCGTGTCGCTCCGTGATCGCATCTGCTCCGGTCCTCATCGTTCCTGAGCGGTGCTATGTTCCTGCTTCGTGCCGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATCGCACTGTGCCATCCAGTGACTGCACCGTGTGACCTCGCACCTGCTCCGGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGCACCGTGTGACCTCGCACCTGCTCCGGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGCCGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGCACCGTGCGACCTCGCACCTGCTCCGGTCCTCATCTTTCCTGAGCGGNGCTATGTTCCTGCTTCGTGCCGCTCCGTGATTGCACCTGCT] consensusID : consensus_5007#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 652 fasta sequence [CAGAATCCCCCGAGGTTTGTTCTGAGCGGTGCTATGTTCCTGCTTNGTGCCTGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTAGTCGCTCCGTGATCGCACTGTGCCATCCAGTGACTGCACCGTGTGACCTCGCACCTGCTCCGGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGNACCGTGTGACCTCGGCACCTGCTCCGGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGCCGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGACCGTGCGACTCGCACCTGGTCCGGTCCTCATCGTTCCTGAGCGGTGCCTATGTTCCTGCTTCGTGCCGCTCCGGTGATTGCACCTGCATCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGCTGTCGCTCCGNGATCGCACTGTGCCGTCCA] [+] EMBL AL693109 [CAGAATCCCCCGAGGTTTGTTCTGAGCGGTGCTATGTTCCTGCTTNGTGCCTGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTAGTCGCTCCGTGATCGCACTGTGCCATCCAGTGACTGCACCGTGTGACCTCGCACCTGCTCCGGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGNACCGTGTGACCTCGGCACCTGCTCCGGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGCCGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGACCGTGCGACTCGCACCTGGTCCGGTCCTCATCGTTCCTGAGCGGTGCCTATGTTCCTGCTTCGTGCCGCTCCGGTGATTGCACCTGCATCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGCTGTCGCTCCGNGATCGCACTGTGCCGTCCA] consensusID : consensus_5007#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 507 fasta sequence [TTTTTTTTACACACGGATAAAGATAAACACGTTTTATTTGCAATTAAAGTATACTTGCGGTGATCTCCGTTCACGTTGAGATCAATATGATAAGAGAGCGGTCGATCCGCTGATCGATCGCTTTATAGATGCTTCTCGCAGGAAGCAGGATAGCGCATTCTTTCGTTGCCACGTGCCGAACGATAACGTGTCGGCCCGTGATTGGTCGAGCTGGTGCGTGGGAGAAACGCATTCTCCTAGACGTATGCGGGAGAAACGCATGCGAGAATTCGCATGCCGACGTGTCGGAGTCGACATCAGGATTACAATTCGATTTGACCGTTTATTGCGACAACCATCCTCCCCCCTTTGGGAAGAAGACTTCCTTCCCAAATATTTCACGCTATTAGGTGGTCGTGTTTGTGTCCTGACTTCAAAGAGCATTTCGTGTAAGACATGTTGAACGTTGAGGTTTTCTCGTTGCTTAAGAAAGTTTTCCCAAAACGTACCTGTGTTGCCTTAGCTCCC] [+] EMBL AGA283470 [TTTTTTTTACACACGGATAAAGATAAACACGTTTTATTTGCAATTAAAGTATACTTGCGGTGATCTCCGTTCACGTTGAGATCAATATGATAAGAGAGCGGTCGATCCGCTGATCGATCGCTTTATAGATGCTTCTCGCAGGAAGCAGGATAGCGCATTCTTTCGTTGCCACGTGCCGAACGATAACGTGTCGGCCCGTGATTGGTCGAGCTGGTGCGTGGGAGAAACGCATTCTCCTAGACGTATGCGGGAGAAACGCATGCGAGAATTCGCATGCCGACGTGTCGGAGTCGACATCAGGATTACAATTCGATTTGACCGTTTATTGCGACAACCATCCTCCCCCCTTTGGGAAGAAGACTTCCTTCCCAAATATTTCACGCTATTAGGTGGTCGTGTTTGTGTCCTGACTTCAAAGAGCATTTCGTGTAAGACATGTTGAACGTTGAGGTTTTCTCGTTGCTTAAGAAAGTTTTCCCAAAACGTACCTGTGTTGCCTTAGCTCCC] consensusID : consensus_5007#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 346 fasta sequence [TGACTGCACCGTGTGACCTCGCACCTGCTCCGGTCCTCAACGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGCCGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGTGGTGCTACGTTCCTGATTCGTGTCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGCACCGTGTGACCTCGCACCTGCTCCGGTCCTCATCATTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATCGCACTGTGGCATCCAGCGTGGTGGCCTCTCGTCTATCGTGCGTGCGCCCTCCCCACGGGGGGAGCTAACGCAACACAGGTACGTTTTGGGAA] [+] EMBL AGA284766 [TGACTGCACCGTGTGACCTCGCACCTGCTCCGGTCCTCAACGTTCCTGAGCGGTGCTACGTTCCTGCTTCGTGCCGCTCCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGTGGTGCTACGTTCCTGATTCGTGTCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGCACCGTGTGACCTCGCACCTGCTCCGGTCCTCATCATTCCTGAGCGGTGCTACGTTCCTGCTTCGTGTCGCTCCGTGATCGCACTGTGGCATCCAGCGTGGTGGCCTCTCGTCTATCGTGCGTGCGCCCTCCCCACGGGGGGAGCTAACGCAACACAGGTACGTTTTGGGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5007#0 TGCTTCTCCCGACAACATGCTGCAGCAAAATGCCCTTGCGAGAAACGATGCCAAGTATGC 60 consensus_5007#1 ------------------------------------------------------------ consensus_5007#3 ------------------------------------------------------------ consensus_5007#2 ------------------------------------------------------------ consensus_5007#0 TCCAAGAAACACCATACGATGCTGCATGTCGAAAGCAATGGGAGTGAGAAGTAACTATCA 120 consensus_5007#1 ------------------------------------------------------------ consensus_5007#3 ------------------------------------------------------------ consensus_5007#2 ------------------------------------------------------------ consensus_5007#0 GGTTATCATCGCACCCCATTCACCATGCCCATTCGTTCCTGCTTCGTGTCGCTCCGTGAT 180 consensus_5007#1 -----------------------------------------------------------C 1 consensus_5007#3 ------------------------------------------------------------ consensus_5007#2 ------------------------------------------------------------ consensus_5007#0 CGCATCTGCTCCGGTCCTCATCGTTCCTGAGCGGTGCTATGTTCCTGCTTCGTGCC-GCT 239 consensus_5007#1 AGAATCCCCCGAGGT-----TTGTTC-TGAGCGGTGCTATGTTCCTGCTTNGTGCCTGCT 55 consensus_5007#3 ------------------------------------------------------------ consensus_5007#2 ------------------TTTTTTTTACACACGGATAAAGATAAACACGTTTTATTTGCA 42 consensus_5007#0 CCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAG--CGGTGCTACGTTCCTGCTTC 297 consensus_5007#1 CCGTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAG--CGGTGCTACGTTCCTGCTTC 113 consensus_5007#3 ------------------------------------------------------------ consensus_5007#2 ATTAAAGTATACTTGCGGTGATCTCCGTTCACGTTGAGATCAATATGATAAGAGAGCGGT 102 consensus_5007#0 GT-GTCGCTCCGTGATCGCACTGTGCCATCCAGTGACTGCACCGTGTGACCTCGCACCTG 356 consensus_5007#1 GTAGTCGCTCCGTGATCGCACTGTGCCATCCAGTGACTGCACCGTGTGACCTCGCACCTG 173 consensus_5007#3 ---------------------------------TGACTGCACCGTGTGACCTCGCACCTG 27 consensus_5007#2 CGATCCGCTGATCGATCGCTTTAT---AGATGCTTCTCGCAGGAAGCAGGATAGCGCATT 159 * *** * * ** * * consensus_5007#0 CTCCGGTCCTCATCGTTCCTGAGCGGTGCTACGTT--CCTGCT-----TCGTGTCGCTCC 409 consensus_5007#1 CTCCGGTCCTCATCGTTCCTGAGCGGTGCTACGTT--CCTGCT-----TCGTGTCGCTCC 226 consensus_5007#3 CTCCGGTCCTCAACGTTCCTGAGCGGTGCTACGTT--CCTGCT-----TCGTGCCGCTCC 80 consensus_5007#2 CTTTCGTTGCCA-CGTGCC-GAACGATAACGTGTCGGCCCGTGATTGGTCGAGCTGGTGC 217 ** ** ** *** ** ** ** * ** ** * *** * * * * consensus_5007#0 GTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGC-TTCGTG 468 consensus_5007#1 GTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGC-TTCGTG 285 consensus_5007#3 GTGATTGCACCTGCTCCAGTCCTCATCGTTCCTGAGTGGTGCTACGTTCCTGA-TTCGTG 139 consensus_5007#2 GTGGGAGAAACGCATTC--TCCTAGACGTATGCGGGAGAAAC-GCATGCGAGAATTCGCA 274 *** * * * * * **** *** * * * * * * * * **** consensus_5007#0 TCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGCACCGTGTGACC--TCG-CACCTGC 525 consensus_5007#1 TCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGNACCGTGTGACC--TCGGCACCTGC 343 consensus_5007#3 TCGCTCCGTGATCGCACTGTGCCGTCCAGTGACTGCACCGTGTGACC--TCG-CACCTGC 196 consensus_5007#2 TGCCGACGTG-TCGGAGTCGACATCAGGATTACAATTCGATTTGACCGTTTATTGCGACA 333 * * **** *** * * * * ** * * ***** * * consensus_5007#0 TCCGGTCCTCATCGTTCCTGAGCGGTGCTACGTTCC----TGCTTCGTGCCGCTCCGTGA 581 consensus_5007#1 TCCGGTCCTCATCGTTCCTGAGCGGTGCTACGTTCC----TGCTTCGTGCCGCTCCGTGA 399 consensus_5007#3 TCCGGTCCTCATCATTCCTGAGCGGTGCTACGTTCC----TGCTTCGTGTCGCTCCGTGA 252 consensus_5007#2 ACCATCCTCCCCCCTTTGGGAAGAAGACTTCCTTCCCAAATATTTCACGCTATTAGGTGG 393 ** * * * ** ** ** * **** * *** * * *** consensus_5007#0 TTGCACCTGC-TCCAGTCCTCATCGTTC-CTGAGCG-GTGCTACGTTCCTGCTTCGTGTC 638 consensus_5007#1 TTGCACCTGC-TCCAGTCCTCATCGTTC-CTGAGCG-GTGCTACGTTCCTGCTTCGTGTC 456 consensus_5007#3 TCGCAC-----TGTGGCATCCAGCGT------GGTG-GCCTCTCGTCTATCGTGCGTG-C 299 consensus_5007#2 TCGTGTTTGTGTCCTGACTTCAAAGAGCATTTCGTGTAAGACATGTTGAACGTTGAGGTT 453 * * * * ** * * * ** * * consensus_5007#0 GCTCCGTGATCGCACTGTGCCGTCCAGTGACTGCACCGTGCGACCTCGCACCTGCTCCGG 698 consensus_5007#1 GCTCCGTGATCGCACTGTGCCGTCCAGTGACTG-ACCGTGCGAC-TCGCACCTGGTCCGG 514 consensus_5007#3 GCCCTCCCCACGGGGGGAGCTAACGCAACACAG----GTACGTTTTGGGAA--------- 346 consensus_5007#2 TTCTCGTTGCTTAAGAAAGTTTTCCCAAAACGTACCTGTGTTGCCTTAGCTCCC------ 507 * * ** ** * consensus_5007#0 TCCTCATCTTTCCTGAGCGGNGC-TATGTTCCTGCTTCGTGCCGCTCCG-TGATTGCACC 756 consensus_5007#1 TCCTCATCGTTCCTGAGCGGTGCCTATGTTCCTGCTTCGTGCCGCTCCGGTGATTGCACC 574 consensus_5007#3 ------------------------------------------------------------ consensus_5007#2 ------------------------------------------------------------ consensus_5007#0 TGCT-------------------------------------------------------- 760 consensus_5007#1 TGCATCCAGTCCTCATCGTTCCTGAGCGGTGCTACGTTCCTGCTTCGCTGTCGCTCCGNG 634 consensus_5007#3 ------------------------------------------------------------ consensus_5007#2 ------------------------------------------------------------ consensus_5007#0 ------------------ consensus_5007#1 ATCGCACTGTGCCGTCCA 652 consensus_5007#3 ------------------ consensus_5007#2 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||