These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_501#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 685 fasta sequence [CCGGGGAAGGGCAGGAAAGCTGGCACGAAGAAAGACAACGGGCACGGTGAGGCTGGTGCGCCGCCGGGCGACAGTGCGGACGAGGGCAAGGGTGGTGGGTCGCGGCGCGATCGAAAGGAGAAGAAGCGGCACCATCATCACCATTCGCACCATCCGGGCGGCGGTATTGGCGGGCCGATTATGAGTGATTCGGCGCTGCAGCAGCGGGACGCTACCAGCAGCAGCAGCAGTCGGCGGTCGGTGGTGATAATAGCCATCATGGGTCGGATGCGGTTAGTGCTGGTGGCCCGAAGGACGATAGCTCATCCACGATGCATTCCAAGCGGCGGCTCGAGGAGGGAGAGTACGACGAAAATAGCAAAGAGTACAAACGGCTGCACGGGGATAGTCGCAGCAGTCATCGGGATCGGGACAAGAAGTGGGACGAGTACGGGTCGGAGCGGGACCGCATGCGAAACGTACCACCGTCGTCCAGGGGCAGTGCACCGGGTACGCCGCAAAGCATGCGCGGCGCCTATCCGGACGAACGGAGCCCAGCCCCGTACCCTGCCGATGGCAGTGCCTGGCGTGATCATCGGTATGTAGCAGCAACGAGAGGGGAGGAAGAAAGCAAGATTCGAAATACTTATTTTGTTTTGTCACCCGCTTTACGGTGTAGTTTCGGGCCGGATCATAAACGGGACCG] [+] EMBL BM645702 [CCGGGGAAGGGCAGGAAAGCTGGCACGAAGAAAGACAACGGGCACGGTGAGGCTGGTGCGCCGCCGGGCGACAGTGCGGACGAGGGCAAGGGTGGTGGGTCGCGGCGCGATCGAAAGGAGAAGAAGCGGCACCATCATCACCATTCGCACCATCCGGGCGGCGGTATTGGCGGGCCGATTATGAGTGATTCGGCGCTGCAGCAGCGGGACGCTACCAGCAGCAGCAGCAGTCGGCGGTCGGTGGTGATAATAGCCATCATGGGTCGGATGCGGTTAGTGCTGGTGGCCCGAAGGACGATAGCTCATCCACGATGCATTCCAAGCGGCGGCTCGAGGAGGGAGAGTACGACGAAAATAGCAAAGAGTACAAACGGCTGCACGGGGATAGTCGCAGCAGTCATCGGGATCGGGACAAGAAGTGGGACGAGTACGGGTCGGAGCGGGACCGCATGCGAAACGTACCACCGTCGTCCAGGGGCAGTGCACCGGGTACGCCGCAAAGCATGCGCGGCGCCTATCCGGACGAACGGAGCCCAGCCCCGTACCCTGCCGATGGCAGTGCCTGGCGTGATCATCGGTATGTAGCAGCAACGAGAGGGGAGGAAGAAAGCAAGATTCGAAATACTTATTTTGTTTTGTCACCCGCTTTACGGTGTAGTTTCGGGCCGGATCATAAACGGGACCG] consensusID : consensus_501#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 520 fasta sequence [CCGAGCAGTCATCGGGATCGGGACAAGAAGTGGGACGAGTACGGGTCGGAGCGGGACCGCATGCGAAACGTACCACCGTCGTCCAGGGGCAGTGCACCGGGTACGCCGCAAAGCATGCGCGGCGCCTATCCGGACGAACGGAGCCCAGCCCCGTACCCTGCCGATGGTGGTGCCTGGCGTGATCATCGTTTCGGGCCGGATCATAAACGGGACCGGTACGACGGTTACGGCAGCAGCAGACACTCCTCCTCCTCCGGCGGCTACCATCGCGATCGGGATCGTGAGCGCGATCGGGACCGGGATCGGGATCGGGAGTGGGACCGTGATCGGGACCGTGACAGGGATCGCGATCGTGACCGGGGTGACCGGGCTTACAAGGACAAGCGAAGGTACCCTCCACCCGGTTCCGGCGGTTATTCCGGTGGCCACGGTTACGGTATGTCCCCGTCCGGGGGCTACTATCCGCCCGGCAGCGACAGCTCCTACCGCTATCCGATGGGCAGTGGCGGCGGGCGGCGGT] [+] EMBL BM622599 [CCGAGCAGTCATCGGGATCGGGACAAGAAGTGGGACGAGTACGGGTCGGAGCGGGACCGCATGCGAAACGTACCACCGTCGTCCAGGGGCAGTGCACCGGGTACGCCGCAAAGCATGCGCGGCGCCTATCCGGACGAACGGAGCCCAGCCCCGTACCCTGCCGATGGTGGTGCCTGGCGTGATCATCGTTTCGGGCCGGATCATAAACGGGACCGGTACGACGGTTACGGCAGCAGCAGACACTCCTCCTCCTCCGGCGGCTACCATCGCGATCGGGATCGTGAGCGCGATCGGGACCGGGATCGGGATCGGGAGTGGGACCGTGATCGGGACCGTGACAGGGATCGCGATCGTGACCGGGGTGACCGGGCTTACAAGGACAAGCGAAGGTACCCTCCACCCGGTTCCGGCGGTTATTCCGGTGGCCACGGTTACGGTATGTCCCCGTCCGGGGGCTACTATCCGCCCGGCAGCGACAGCTCCTACCGCTATCCGATGGGCAGTGGCGGCGGGCGGCGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_501#0 CCGGGGAAGGGCAGGAAAGCTGGCACGAAGAAAGACAACGGGCACGGTGAGGCTGGTGCG 60 consensus_501#1 ------------------------------------------------------------ consensus_501#0 CCGCCGGGCGACAGTGCGGACGAGGGCAAGGGTGGTGGGTCGCGGCGCGATCGAAAGGAG 120 consensus_501#1 ---CCGAGCAGTCATCGGGATCGGGACAAGAA--GTGGGACGAGTACGGGTCGGAGCGGG 55 *** ** * *** ** **** ***** ** * * *** * * * consensus_501#0 AAGAAGCGGCACCATCATCACCATT-CGCACCATCCGGGCGGCGGTATTGGCGGGCCGAT 179 consensus_501#1 ACCGCATGCGAAACGTACCACCGTCGTCCAGGGGCAGTGCACCGGGTACGCC--GCAAAG 113 * * * * **** * ** * * ** *** * * ** * consensus_501#0 TATGAGTGATTCGGCGCTGCAGCAGCGGGACGCTACCAGCAGCAGCAGCAGTCGGCGGTC 239 consensus_501#1 CATGCGCGGCGCCTATCCGGACGAACGGAGC-CCAGCCCCGTACCCTGCCGATGGTGGTG 172 *** * * * * * * * *** * * * * * * ** * ** *** consensus_501#0 GGTGGTGATAATAGCCATCATGGGTCGGATGCGGTTAGTGCTGGTGGCCCGAAGG--ACG 297 consensus_501#1 CCTGGCG-TGATCATCGTTTCGGGCCGGAT--CATAAACGGGACCGGTACGACGGTTACG 229 *** * * ** * * *** ***** * * * ** *** ** *** consensus_501#0 ATAGCTCATCCACGATGCATTCCAAGCGGCGGCTCGAGGAGGGAGAGTACGACGAAAATA 357 consensus_501#1 GCAGCA-GCAGACACTCCTCCTCCTCCGGCGGCT--ACCATCGCGATCGGGATCGTGAGC 286 *** ** * * * ******** * * * ** ** * consensus_501#0 GCAAAGAGTACAAACGGCTGCACGGGGATAGTCGCAGCAGTCATCGGGATCGGGACAAGA 417 consensus_501#1 GCGATCGGGACCGGGATCGGGATCGGGAG---TGGGACCGTGATCGGGACCGTGACAGGG 343 ** * * ** * * * **** * * ** ******* ** **** * consensus_501#0 AGTGGGACGAGTACGGGTCGGAGCGGGACCGCATGCGAAACGTACCACCGTCGTCCAGGG 477 consensus_501#1 ATCGCGATCGTGACCGGGGTGACCGGGCTTACAAG-GACAAGCGAAGGTACCCTCCACCC 402 * * ** ** ** ** **** ** * ** * * * **** consensus_501#0 GCAGTGCACCGGGTACGCCGCAAAGCATGCGCGGCGCCTATCCGGACGAACGGAGCCCAG 537 consensus_501#1 G-GTTCCGGCGGTTATTCCGGTGGCCACGGTTACGGTATGTCCC--CGTCCGGGGGCTA- 458 * * * *** ** *** ** * * * *** ** *** * * * consensus_501#0 CCCCGTACCCTGCCGATGGCAGTGCCTGGCGTGATCATCGGTATGTAGCAGCAACGAGAG 597 consensus_501#1 -CTATCCGCCCGGCAGCGACAGCTCCTACCGCTATC--CGATGGGCAGTGGCGGCGGGCG 515 * ** * * * *** *** ** *** ** * * ** ** ** * * consensus_501#0 GGGAGGAAGAAAGCAAGATTCGAAATACTTATTTTGTTTTGTCACCCGCTTTACGGTGTA 657 consensus_501#1 GCGGT------------------------------------------------------- 520 * * consensus_501#0 GTTTCGGGCCGGATCATAAACGGGACCG 685 consensus_501#1 ---------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||