These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5016#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1397 fasta sequence [GCAGAATCCCCGAGGTTATTCGAAAGCGAGAGCGAGAGCGAGAGGGAGAGAACGATGAGATGCTGAAATGGTGTTGTGAATGCTACTACACAAACATTGGTGAATATGTGATTTATTTCCATTTGAAGTGCAACAAATTCTGTTCTGTGTTAACGTATTTCCCGGTGGAACAAAGTGCCAAAAATATGGTGACCTAAAACCTGTGTCAACCACATCCAGGGAATGCAAGACTGGCTGTGAAATGCAAAGGTGCTGTATCTGCTGTTTTTGACATGTTCACTAGCTCTCTCGCCACTGTGGCTCCAACTCACCGCGTGAGACGTGTAGTGGCTTGGGGTTGCTTACTCACCACTCACTCACCACTCAGCGAGCCGTACGCTGATCGTCACTTTTACGCGTATGTTTTTGTTGATTCTTGGGTGGTCAGAAAAAACGGACAGAAGTTCCAAAATGGAAAATGNGCTGGACTGCATCCCCGTACAGTCCTGTGTGATCATTTTTCCTGTGCCCGTGAATTCAACTACAGGTGATCATTTGATCGGTGCTGCTTTGGAGCAGTGGACTCCCCATCGNTACGTTTGTACANTGGGTAATACTTACTNTTCCTTANAAACTTATCTTTACGCAAACGGGAGTGGATCGCGATCCCACAAACGCTGTACACGCTGAACAAAGTTAAGTGCAAACCCGGTCTNTAAGATGATCCGTGATCCTGGACGGTTACAAGCCCGAAGCGCATGTAATCAAGATNTCTCACCAACTNNTCGGCCAAGGTATGATACGGNNATACTGGAGAGACTGNGCCCNGACTAAAGCCCCCCCAGGGAACGACAATTTGGNCAAAATTNCCCACCGGATTGGCCACATTTGAACCCGGTANCCAGAGNCTGCCAAAGGGGAACNACGTCACGGAATTGGGCCAANTGNGAATNCGGCACNGAACATGGAGATNAGCGTGAGANTCATTCACNGTCNNAGAAATGANAAACCGGNATGTTCAANANTCNNTNAAACAAACTGGTTGGCGAGCCACCCAGGAACGTTTGGTCAANTGCTAACCGGAAAAGGGGGCACACCTGGGTCCCACTCCANACCCCNNGGAATTANACAACNAAAACAGCCCGGCGCACATACNAGCAGCGTACCCAACAATTTTTGNATACANACAACCCCACAAAACAGNGGTAGNGACACNACAATANGGTGGGAGCTTCAACAACGCAACANNGTANAACANGTTTNACAAATNGTNAACCAAAACNTGGTGAACGCGNGGCGCAACANCNANCCTGGACGCTCNAACTCACGCAACCCACNCNCACATCGNCNTTCNAGNCCCGGAAGACTCACGCTGTCCCCCCAGCGTCANACCNCTGNGATATCCNNGCATCGCTGCA] [+] EMBL AL931390 [GCAGAATCCCCGAGGTTATTCGAAAGCGAGAGCGAGAGCGAGAGGGAGAGAACGATGAGATGCTGAAATGGTGTTGTGAATGCTACTACACAAACATTGGTGAATATGTGATTTATTTCCATTTGAAGTGCAACAAATTCTGTTCTGTGTTAACGTATTTCCCGGTGGAACAAAGTGCCAAAAATATGGTGACCTAAAACCTGTGTCAACCACATCCAGGGAATGCAAGACTGGCTGTGAAATGCAAAGGTGCTGTATCTGCTGTTTTTGACATGTTCACTAGCTCTCTCGCCACTGTGGCTCCAACTCACCGCGTGAGACGTGTAGTGGCTTGGGGTTGCTTACTCACCACTCACTCACCACTCAGCGAGCCGTACGCTGATCGTCACTTTTACGCGTATGTTTTTGTTGATTCTTGGGTGGTCAGAAAAAACGGACAGAAGTTCCAAAATGGAAAATGNGCTGGACTGCATCCCCGTACAGTCCTGTGTGATCATTTTTCCTGTGCCCGTGAATTCAACTACAGGTGATCATTTGATCGGTGCTGCTTTGGAGCAGTGGACTCCCCATCGNTACGTTTGTACANTGGGTAATACTTACTNTTCCTTANAAACTTATCTTTACGCAAACGGGAGTGGATCGCGATCCCACAAACGCTGTACACGCTGAACAAAGTTAAGTGCAAACCCGGTCTNTAAGATGATCCGTGATCCTGGACGGTTACAAGCCCGAAGCGCATGTAATCAAGATNTCTCACCAACTNNTCGGCCAAGGTATGATACGGNNATACTGGAGAGACTGNGCCCNGACTAAAGCCCCCCCAGGGAACGACAATTTGGNCAAAATTNCCCACCGGATTGGCCACATTTGAACCCGGTANCCAGAGNCTGCCAAAGGGGAACNACGTCACGGAATTGGGCCAANTGNGAATNCGGCACNGAACATGGAGATNAGCGTGAGANTCATTCACNGTCNNAGAAATGANAAACCGGNATGTTCAANANTCNNTNAAACAAACTGGTTGGCGAGCCACCCAGGAACGTTTGGTCAANTGCTAACCGGAAAAGGGGGCACACCTGGGTCCCACTCCANACCCCNNGGAATTANACAACNAAAACAGCCCGGCGCACATACNAGCAGCGTACCCAACAATTTTTGNATACANACAACCCCACAAAACAGNGGTAGNGACACNACAATANGGTGGGAGCTTCAACAACGCAACANNGTANAACANGTTTNACAAATNGTNAACCAAAACNTGGTGAACGCGNGGCGCAACANCNANCCTGGACGCTCNAACTCACGCAACCCACNCNCACATCGNCNTTCNAGNCCCGGAAGACTCACGCTGTCCCCCCAGCGTCANACCNCTGNGATATCCNNGCATCGCTGCA] consensusID : consensus_5016#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 736 fasta sequence [CCGGAAAAAAACGAAGAAGACGCAAGGGGCAAACTCGCATCGCGCTCACTGTGACTCGAAAGCGAGAGCGAGAGCGAGAGGGAGAGAACGATGAGATGCTGAAATGGTGTTGTGAATGCTACTACACAAACATTGGTGAATTGTGATTTATTTCCATTGAAGTGCAACAAATTCGTTCTGTGTTAAGTTTTCCGGGAACAAAGTGCCAAAAAAGGGACCAAAACCGGCCAACCACATCCAGGAAGCAAACGGCGTGAAAGCAAAGGCTGTTCGCGTTTTGACAGTTCACAGCTCTCTCGCCACGGGCTCCAACTCACCGCGTGAGACGTTAGTGGCTTGGGGGGCTTACTCACCACTCACTCACCACTCAGCGAGCCGTCGCGATCGTCACTTTTCGCGTATGTTTTGTTGATTTGGGGGTCAGAAAAAACGGACAGAAGTTCCAAAAGGAAAA-GGCGGACGCATCCCCGTCAGTCCGTGTGATCATTTTCCGTGCCCGTGAATTCAACTACAGCGTGATCATTTGATCGGTGCGCTTGGAGCAGGGACTCCCCTCGTCGTTGTTTGGTTTACTTCTTTCCCTTTTCTTTCTTTCGCCAACCGGGAGGGATCGCGATCCCACAAACGCTGTCACGCTGAAAAAGTTAGTGCAAACCCGTCTTAAGATGATCCGTGATCCTGGCGGTACAAGCCCGAACGAGAATCAAGATTCTCCCCCTTCGCCCAAGTATGATCG] [+] EMBL AGA285747 [CCGGAAAAAAACGAAGAAGACGCAAGGGGCAAACTCGCATCGCGCTCACTGTGACTCGAAAGCGAGAGCGAGAGCGAGAGGGAGAGAACGATGAGATGCTGAAATGGTGTTGTGAATGCTACTACACAAACATTGGTGAATTGTGATTTATTTCCATTGAAGTGCAACAAATTCGTTCTGTGTTAAGTTTTCCGGGAACAAAGTGCCAAAAAAGGGACCAAAACCGGCCAACCACATCCAGGAAGCAAACGGCGTGAAAGCAAAGGCTGTTCGCGTTTTGACAGTTCACAGCTCTCTCGCCACGGGCTCCAACTCACCGCGTGAGACGTTAGTGGCTTGGGGGGCTTACTCACCACTCACTCACCACTCAGCGAGCCGTCGCGATCGTCACTTTTCGCGTATGTTTTGTTG ] [-] EMBL AGA283685 [ ACGGGCTCCAACTCACCGCGTGAGACGTGAGTGGCTTGGGGGGCTTACTCACCACTCACTCACCACTCAGCGAGCCGTCGCGATCGTCACTTTTCGCGTATGTTTTGTTGATTTGGGGGTCAGAAAAAACGGACAGAAGTTCCAAAAGGAAAA GGCGGACGCATCCCCGTCAGTCCGTGTGATCATTTTCCGTGCCCGTGAATTCAACTACAGCGTGATCATTTGATCGGTGCGCTTGGAGCAGGGACTCCCCTCGTCGTTGTTTGGTTTACTTCTTTCCCTTTTCTTTCTTTCGCCAACCGGGAGGGATCGCGATCCCACAAACGCTGTCACGCTGAAAAAGTTAGTGCAAACCCGTCTTAAGATGATCCGTGATCCTGGCGGTACAAGCCCGAACGAGAATCAAGATTCTCCCCCTTCGCCCAAGTATGATCG] [-] EMBL AGA284440 [ GATCGTCACTTTTGGCGTATGTTTTGTTGATTTGGGGGTCAGAAAAAACGGACAGAAGTTCCAAAAGGAAAAGGGCGGACGCATCCCCGTCAGTCCGTGTGATCATTTTCCGTGCCCGTGAATTCAACTACAGCGTGATCATTTGATCGGTGCGCTTGGAGCAGGGACTCCCCTCGTCGTTGTTTGGTTTACTTCTTTCCTTTTTCTTTCTTTCGCCAACCGGGAGGGATCGCGATCCCACAAACGCTGTCACGCTGAAAAAGTTAGTGCAAACCCGTCTTAAGATGATCCGTGATCCTGGCGGTACAAGCCCGAACGAGAATCAAGATTCTCCCCCTTCGCCCAAGTATGATCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5016#0 ------------------------------------GCAGAATCCCCGAGGTTATTCGAA 24 consensus_5016#1 CCGGAAAAAAACGAAGAAGACGCAAGGGGCAAACTCGCATCGCGCTCACTGTGACTCGAA 60 *** * * ** * ***** consensus_5016#0 AGCGAGAGCGAGAGCGAGAGGGAGAGAACGATGAGATGCTGAAATGGTGTTGTGAATGCT 84 consensus_5016#1 AGCGAGAGCGAGAGCGAGAGGGAGAGAACGATGAGATGCTGAAATGGTGTTGTGAATGCT 120 ************************************************************ consensus_5016#0 ACTACACAAACATTGGTGAATATGTGATTTATTTCCATTTGAAGTGCAACAAATTCTGTT 144 consensus_5016#1 ACTACACAAACATTGGTGAAT-TGTGATTTATTTCCATT-GAAGTGCAACAAATTC-GTT 177 ********************* ***************** **************** *** consensus_5016#0 CTGTGTTAACGTATTTCCCGGTGGAACAAAGTGCCAAAAATATGGTGACCTAAAACCTGT 204 consensus_5016#1 CTGTGTTAA---GTTTTCCGG--GAACAAAGTGCCAAAAA---AGGGACC-AAAACCGGC 228 ********* *** **** ***************** * **** ****** * consensus_5016#0 GTCAACCACATCCAGGGAATGCAAGACTGGCTGTGAAATGCAAAGGTGCTGTATCTGCTG 264 consensus_5016#1 --CAACCACATCCAGGAAGCAAACGGC-----GTGAAA-GCAAAGG--CTGTTCGCG--- 275 ************** * * * * ****** ******* **** * consensus_5016#0 TTTTTGACATGTTCACTAGCTCTCTCGCCACTGTGGCTCCAACTCACCGCGTGAGACGTG 324 consensus_5016#1 -TTTTGACA-GTTCAC-AGCTCTCTCGCCACGG--GCTCCAACTCACCGCGTGAGACGT- 329 ******** ****** ************** * ************************ consensus_5016#0 TAGTGGCTTGGGGTTGCTTACTCACCACTCACTCACCACTCAGCGAGCCGTACGCTGATC 384 consensus_5016#1 TAGTGGCTTGGGGG-GCTTACTCACCACTCACTCACCACTCAGCGAGCCGT-CGC-GATC 386 ************* ************************************ *** **** consensus_5016#0 GTCACTTTTACGCGTATGTTTTTGTTGATTCTTGGGTGGTCAGAAAAAACGGACAGAAGT 444 consensus_5016#1 GTCACTTTT-CGCGTATGTTTT-GTTGATTT---GGGGGTCAGAAAAAACGGACAGAAGT 441 ********* ************ ******* ** *********************** consensus_5016#0 TCCAAAATGGAAAATGNGCTGGACTGCATCCCCGTACAGTCCTGTGTGATCATTTTTCCT 504 consensus_5016#1 TCCAAAA-GGAAAAGGCG---GAC-GCATCCCCGT-CAGTCC-GTGTGATCATTTTCC-- 492 ******* ****** * * *** ********** ****** ************* * consensus_5016#0 GTGCCCGTGAATTCAACTACAG-GTGATCATTTGATCGGTGCTGCTTTGGAGCAGTGGAC 563 consensus_5016#1 GTGCCCGTGAATTCAACTACAGCGTGATCATTTGATCGGTGCG--CTTGGAGCAG-GGAC 549 ********************** ******************* ********* **** consensus_5016#0 TCCCCATCGNTACGTTTGTACANTGGGTAATACTTACTNTTCCTTANAAACTTATCTTTA 623 consensus_5016#1 TCCCC-TCGTCG---TTGT---TTGGTT--TACTT-CTTTCCCTT-----TTCTTTCTTT 594 ***** *** **** *** * ***** ** * **** * * ** consensus_5016#0 CGCAAACGGGAGTGGATCGCGATCCCACAAACGCTGTACACGCTGAACAAAGTTAAGTGC 683 consensus_5016#1 CGCCAACCGGGAGGGATCGCGATCCCACAAACGCTGT-CACGCTGAA-AAAGTTA-GTGC 651 *** *** ** ************************ ********* ******* **** consensus_5016#0 AAACCCGGTCTNTAAGATGATCCGTGATCCTGGACGGTTACAAGCCCGAAGCGCATGTAA 743 consensus_5016#1 AAACCCG--TCTTAAGATGATCCGTGATCCTGG-CGGT-ACAAGCCCGAA-CGAG---AA 703 ******* ********************* **** *********** ** ** consensus_5016#0 TCAAGATNTCTCACCAACTNNTCGGCCAAGGTATGATACGGNNATACTGGAGAGACTGNG 803 consensus_5016#1 TCAAGATTCTCC-----CCCTTCGCCCAAG-TATGAT-CG-------------------- 736 ******* * * *** ***** ****** ** consensus_5016#0 CCCNGACTAAAGCCCCCCCAGGGAACGACAATTTGGNCAAAATTNCCCACCGGATTGGCC 863 consensus_5016#1 ------------------------------------------------------------ consensus_5016#0 ACATTTGAACCCGGTANCCAGAGNCTGCCAAAGGGGAACNACGTCACGGAATTGGGCCAA 923 consensus_5016#1 ------------------------------------------------------------ consensus_5016#0 NTGNGAATNCGGCACNGAACATGGAGATNAGCGTGAGANTCATTCACNGTCNNAGAAATG 983 consensus_5016#1 ------------------------------------------------------------ consensus_5016#0 ANAAACCGGNATGTTCAANANTCNNTNAAACAAACTGGTTGGCGAGCCACCCAGGAACGT 1043 consensus_5016#1 ------------------------------------------------------------ consensus_5016#0 TTGGTCAANTGCTAACCGGAAAAGGGGGCACACCTGGGTCCCACTCCANACCCCNNGGAA 1103 consensus_5016#1 ------------------------------------------------------------ consensus_5016#0 TTANACAACNAAAACAGCCCGGCGCACATACNAGCAGCGTACCCAACAATTTTTGNATAC 1163 consensus_5016#1 ------------------------------------------------------------ consensus_5016#0 ANACAACCCCACAAAACAGNGGTAGNGACACNACAATANGGTGGGAGCTTCAACAACGCA 1223 consensus_5016#1 ------------------------------------------------------------ consensus_5016#0 ACANNGTANAACANGTTTNACAAATNGTNAACCAAAACNTGGTGAACGCGNGGCGCAACA 1283 consensus_5016#1 ------------------------------------------------------------ consensus_5016#0 NCNANCCTGGACGCTCNAACTCACGCAACCCACNCNCACATCGNCNTTCNAGNCCCGGAA 1343 consensus_5016#1 ------------------------------------------------------------ consensus_5016#0 GACTCACGCTGTCCCCCCAGCGTCANACCNCTGNGATATCCNNGCATCGCTGCA 1397 consensus_5016#1 ------------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||