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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5018#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 811 fasta sequence
[GAATCCCGCGGTTAAAC-AAC-AACAAACAAACTCCATCTTGTNGTTCCATGAAAGTTTCAGGAATGGACGATGGGGGATGATTAGATGAAATTAAGCAGGATAGCGTAAGTCTCTTACAAAACAATTAGCGTTAGTATGTATAGGGTGTACTCCCATTAAAAAAAAATCTTATTTTTAGATAAGGCAGTCTGTACCCGATTTACGAGCGATTCTGGACGTGCACGAGTTGGGCGGTATGTGCATTGTTGTACATGTATTG-TTGA--TTTANCATAACAAGCATCTTTAGAACAACATTGTTCTACATTTGACAAACCCAGTTGTCGAATGCATAACCAAATGCGCCTNTNTCTATTGATATATTAAACAGATACTGACAGTAAAAAACACAAGCTCACATTTCTTCTCANTTGTTCTANAAAAAACATTNTCCAAATTACACACTTACAATATCCANATACTTCCCTACAACTGATAATTACNAAAAATTANAAACAATTCATAACCTTTACAGGTAACACANCACCATTGGTTCGCGCTCACAACACCACCTTCGACAGAATTCATATTCCGGGCCACTNNTCGNGAGATGGAGCAATTTGTTTATCCGCAAGNTTTACGGCACCCCCGGACGACGATTACTTATACAGCGAGAGGAACCCGGTTTATTAACCCAACCCCAACACGNTTCAAACGCTCACCCTGGCGNGCGAAAACACCACAGGAATCTCGCTAACATTCACTTTATCTTAACCCGATTCAACTTCAACGACTAACTTCANAGCATNCCCGGTGCAGGGTTACCCAGGATCAC]
[+] EMBL AL694112 [GAATCCCGCGGTTAAAC AAC AACAAACAAACTCCATCTTGTNGTTCCATGAAAGTTTCAGGAATGGACGATGGGGGATGATTAGATGAAATTAAGCAGGATAGCGTAAGTCTCTTACAAAACAATTAGCGTTAGTATGTATAGGGTGTACTCCCATTAAAAAAAAATCTTATTTTTAGATAAGGCAGTCTGTACCCGATTTACGAGCGATTCTGGACGTGCACGAGTTGGGCGGTATGTGCATTGTTGTACATGTATTG TTGA TTTANCATAACAAGCATCTTTAGAACAACATTGTTCTACATTTGACAAACCCAGTTGTCGAATGCATAACCAAATGCGCCTNTNTCTATTGATATATTAAACAGATACTGACAGTAAAAAACACAAGCTCACATTTCTTCTCANTTGTTCTANAAAAAACATTNTCCAAATTACACACTTACAATATCCANATACTTCCCTACAACTGATAATTACNAAAAATTANAAACAATTCATAACCTTTACAGGTAACACANCACCATTGGTTCGCGCTCACAACACCACCTTCGACAGAATTCATATTCCGGGCCACTNNTCGNGAGATGGAGCAATTTGTTTATCCGCAAGNTTTACGGCACCCCCGGACGACGATTACTTATACAGCGAGAGGAACCCGGTTTATTAACCCAACCCCAACACGNTTCAAACGCTCACCCTGGCGNGCGAAAACACCACAGGAATCTCGCTAACATTCACTTTATCTTAACCCGATTCAACTTCAACGACTAACTTCANAGCATNCCCGGTGCAGGGTTACCCAGGATCAC]
[+] EMBL BX622857 [ aggaaaaAAACAAACAAACAAACAAACTCCATCTTGTGGTTCCATGAAAGTTTCAGGAATGGACGATGGGGGATGATTAGATGAAATTAAGCAGGATAGCGTAAGTCTCTTACAAAACAATTAGCGTTAGTATGTATAGGGTGTACTCCCATTAAAAAAAAATCTTATTTTTAGATAAGGCAGTCTGTACCCGATTTACGAGCGATTCTGGACGTGCACGAGTTGGGCGGTATGTGCATTGTTGTACATGTATTGTTTGATTTTTTTTTTAACAAGCATCTTTAGAACAA ATTGTTCTA ATTTGACAAACCCAGTTGTCGAATGCATAACCAAATGCGCCT T TCTATTGATATTTTAAA AGAT TTGA AGTAAAAAA AAGCT A ATTT ]
consensusID : consensus_5018#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 266 fasta sequence
[GGTGTATACGTCCCGAAGACGCGCGGGCGTAACTCGAACATCCACCGAAGCC-AATGTCGCAGTGTTTAGCCACATTTTTACTTAAGTAGATGTAATTTTGATAACAGTGAGAGATTGAATTAATTTATTTGAATTTTTTAAAACATAAAGAAATTAGCTTTTTTTTACTTCAAATCTTTTAAAATATCAATAGAAAGGCGCATTTGGTTATGCATTCGACAACTGGGTTTGTCAAATTAGAACAATTTGTTCTAAAGATGCTTGTT]
[-] EMBL AGA283890 [GGTGTATACGTCCCGAAGACGCGCGGGCGTAACTCGAACATCCACCGAAGCC AATGTCGCAGTGTTTAGCCACATTTTTACTTAAGTAGATGTAATTTTGATAACAGTGAGAGATTGAATTAATTTATTTGAATTTTTTAAAACATAAAGAAATTAGCTTTTTTTTACTTCAAATCTTTTAAAATATCAATAGAAAGGCGCATTTGGTTATGCATTCGACAACTGGGTTTGTCAAATTAGAACAATTTGTTCTAAAGATGCTTGTT]
[+] EMBL AGA285184 [ GTCCCGAAGACGCGCGGGCGTAACTCGAACATCCACCGAAGCCGAATATCGCAGTGTTTAGCCACATTTTTACTTAAGTAGATGTAATTTTGATACCAGTGAGAGATTGAATTAATTTATTTGAATTTTTTAAGACATAAAGAAATTAGC ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5018#0 GAATCCCGCGGTTAAACAACAACAAACAAACTCCATCTTGTNGTTCCATGAAAGTTTCAG 60
consensus_5018#1 ------------------------------------------------------------
consensus_5018#0 GAATGGACGATGGGGGATGATTAGATGAAATTAAGCAGGATAGCGTAAGTCTCTTACAAA 120
consensus_5018#1 ------------------------------------------------------------
consensus_5018#0 ACAATTAGCGTTAGTATGTATAGGGTGTACTCCCATTAAAAAAAAATCTTATTTTTAGAT 180
consensus_5018#1 --------------------------------------------------------GGTG 4
*
consensus_5018#0 AAGGCAGTCTGTACCCGATTTACGAGCG-ATTCTGGACGTGCACGAGTTGGGCGGTATGT 239
consensus_5018#1 TATACGTCCCGAA---GACGCGCGGGCGTAACTCGAACATCCACCGA--AGCCAATGT-C 58
* * * * * ** ** *** * * ** * *** * * * *
consensus_5018#0 GCATTGTTGTACATGTATTGTTGATTTANCATAACAAGCATCTTTAGAACAACATTGTTC 299
consensus_5018#1 GCAGTGTT-TAGCCACATTTTTACTTAAGTAGATGTA--ATTTTGATAACAGTGAGAGAT 115
*** **** ** *** ** ** * * * * ** ** * ****
consensus_5018#0 TACATTTGACAAACCCAGTTGTCGAATGCATAACCAAATGCGCCTNTNTCTA-TTGATAT 358
consensus_5018#1 TGAATTAATTTATTTGAATTTTTTAAAACATAAAGAAATTAGCTTTTTTTTACTTCAAAT 175
* *** * * ** * ** ***** **** ** * * * ** ** * **
consensus_5018#0 ATTAAACAGATACTGACAGTAAAAAACACAAGCTCACATTTCTTCTCANTTGTTCTANAA 418
consensus_5018#1 CTTTTA-AAATATCAATAG--AAAGGCGCA----------TTTGGTTATGCATTCGACAA 222
** * * *** * ** *** * ** * * * * *** * **
consensus_5018#0 AAAACATTNTCCAAATTACACACTTACAATATCCANATACTTCCCTACAACTGATAATTA 478
consensus_5018#1 CTGGGTTTGTCAAATTAGAACAATT-TGTTCTAAAGATGCTTGTT--------------- 266
** ** ** * *** ** * * * ** ***
consensus_5018#0 CNAAAAATTANAAACAATTCATAACCTTTACAGGTAACACANCACCATTGGTTCGCGCTC 538
consensus_5018#1 ------------------------------------------------------------
consensus_5018#0 ACAACACCACCTTCGACAGAATTCATATTCCGGGCCACTNNTCGNGAGATGGAGCAATTT 598
consensus_5018#1 ------------------------------------------------------------
consensus_5018#0 GTTTATCCGCAAGNTTTACGGCACCCCCGGACGACGATTACTTATACAGCGAGAGGAACC 658
consensus_5018#1 ------------------------------------------------------------
consensus_5018#0 CGGTTTATTAACCCAACCCCAACACGNTTCAAACGCTCACCCTGGCGNGCGAAAACACCA 718
consensus_5018#1 ------------------------------------------------------------
consensus_5018#0 CAGGAATCTCGCTAACATTCACTTTATCTTAACCCGATTCAACTTCAACGACTAACTTCA 778
consensus_5018#1 ------------------------------------------------------------
consensus_5018#0 NAGCATNCCCGGTGCAGGGTTACCCAGGATCAC 811
consensus_5018#1 ---------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||