These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5022#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 763 fasta sequence [GGCAGCGGCGGTACGACGAGCGCGACCGACAGCAGCAGCAGCAGCAACAGTATCCTGAAGCAGCGCGCGACCTGTGCCTGCTCGAACATCAGCATTATGCAGCTGTTCCACGAGATGAAGCAGAAGTACCCAACCGTACCGGACACGGTCGTGTCCGAGCTGGTGACGCAGAACTGTCACGATCGGCCGGCCTGCATCGGCAAGCTGGAGGAGGCCGTGCTGGGAACGCCCGCCCAAACGACCTACCCGGCACAGTCGATACACAGTGGCAGCCTGAAGCGGCGCGAACGGAAGCTGGGCGGTGGCAACGGCCGGTCAGACGG------CAGCTACAGCAGCAGCAACAGCAGCAGCAACAGCAGCCGGGAGAGCAGTGTCGACAGTAGCAGGCTACAGGGAACTGCATGCCCCGCCACGTCGCCTCAGCAGCAGCAGCAGTACCAACAGGGAGCTTCGATGGCCGGGAATCACACTGGCTACAGTGATAGTAGATTTATAGTAGAGAACCGAAGTGCTGCTGCTGCTGGTGGTGGTGGTGGTGGTTCGCCTGCGAATCGTCCTACCACGTTGGCCGTACGTCCACCGGCGGGTGGACTACCAGGGGGGGGGGGGGGGTCCGCGTACCACGCCACCACCACCGATGCGACCGAACCGAACGGCACCACCGTGTCCACAGCCGTCGGGGCACAGCAATGGTTCGCTGACGACTTCCACCATCACGACGACGGCGAGCAGCAGTGCCGAGCTGGGCGAAACGGTGAACCTG] [+] EMBL AGA285287 [GGCAGCGGCGGTACGACGAGCGCGACCGACAGCAGCAGCAGCAGCAACAGTATCCTGAAGCAGCGCGCGACCTGTGCCTGCTCGAACATCAGCATTATGCAGCTGTTCCACGAGATGAAGCAGAAGTACCCAACCGTACCGGACACGGTCGTGTCCGAGCTGGTGACGCAGAACTGTCACGATCGGCCGGCCTGCATCGGCAAGCTGGAGGAGGCCGTGCTGGGAACGCCCGCCCAAACGACCTACCCGGCACAGTCGATACACAGTGGCAGCCTGAAGCGGCGCGAACGGAAGCTGGGCGGTGGCAACGGCCGGTCAGACGG CAGCTACAGCAGCAGCAACAGCAGCAGCAACAGCAGCCGGGAGAGCAGTGTCGACAGTAGCAGGCTACAGGGAACTGCATGCCCCGCCACGTCGCCTCAGC ] [+] EMBL BM588137 [ ccgGTACCGGACACGGTCGTGTCCGAGCTGGTGACGCAGAACTGTCACGATCGGCCGGCCTGCATCGGCAAGCTGGAGGAGGCCGTGCTGGGAACGCCCGCCCAAACGACCTACCCGGCACAGTCGATACACAGTGGCAGCCTGAAGCGGCGCGAACGGAAGCTGGGCGGTGGCAACGGCCGGTCAGACGGCAGCGTCAGCTACAGCAGCAGCAACAGCAGCAGCAACAGCAGCCGGGAGAGCAGTGTCGACAGTAGCAGGCTACAGGGAACTGCATGCCCCGCCACGTCGCCTCAGCAGCAGCAGCAGTACCAACAGGGAGCTTCGATGGCCGGGAATCACACTGGCTACAGTGATAGTAGATTTATAGTAGAGAACCGAAGTGCTGCTGCTGCTGGTGGTGGTGGTGGTGGTTCGCCTGCGAATCGTCCTACCACGTTGGCCGTACGTCCACCGGCGGGTGGACTACCAGGGGGGGGGGGGGGGTCCGCGTACCACGCCACCACCACCGATGCGACCGAACCGAACGGCACCACCGTGTCCACAGCCGTCGGGGCACAGCAATGGTTCGCTGACGACTTCCACCATCACGACGACGGCGAGCAGCAGTGCCGAGCTGGGCGAAACGGTGAACCTG] consensusID : consensus_5022#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 473 fasta sequence [GCAGAATCCGCACGAGGAGGACATCACTACAGCAAGGCTTCCGAAACCTATGGTTGGCTGCACATTTTCATATACCTAAATGAGCCCATCGAGGATGGCAGAGTATGGCGACTAATCCTTTCAAGCAAGCGCCCGCAGTACCCAGCACGACCCAAAGCAGCAACACACCGCACAGTTACGATGAACCGGACGCACCGCCATACTGTACGTACGCTTCCGCAGCAACCGCTGCGCTACATCGACGCCGAGCTGCTCGACCGGGAGGTGCTGCTGCTGGCGGCGGAAGTCGAACAGCTGCAGAAGGAGGTGGACACGTGCGATGACGAGGAGGCCCGGGTGCAGGCTGCGGCCGCAGCCGGCACCTCAATAACGGACGGGCTGAGTGCGCTGAGCGTCGAGGGTGGTTCACCGCTGATGCTTCCTACATCGGTAGTGTCCGGCGCGGCGGTCATGAATCGCCCGCACGCGAACAC] [+] EMBL BX467697 [GCAGAATCCGCACGAGGAGGACATCACTACAGCAAGGCTTCCGAAACCTATGGTTGGCTGCACATTTTCATATACCTAAATGAGCCCATCGAGGATGGCAGAGTATGGCGACTAATCCTTTCAAGCAAGCGCCCGCAGTACCCAGCACGACCCAAAGCAGCAACACACCGCACAGTTACGATGAACCGGACGCACCGCCATACTGTACGTACGCTTCCGCAGCAACCGCTGCGCTACATCGACGCCGAGCTGCTCGACCGGGAGGTGCTGCTGCTGGCGGCGGAAGTCGAACAGCTGCAGAAGGAGGTGGACACGTGCGATGACGAGGAGGCCCGGGTGCAGGCTGCGGCCGCAGCCGGCACCTCAATAACGGACGGGCTGAGTGCGCTGAGCGTCGAGGGTGGTTCACCGCTGATGCTTCCTACATCGGTAGTGTCCGGCGCGGCGGTCATGAATCGCCCGCACGCGAACAC] consensusID : consensus_5022#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 393 fasta sequence [CAGCAGTACCAACAGGGAGCTTCGATGGCCGGGAATCACACTGGCTACAGTGATAGTAGATTTATAGTAGAGAACCGAAGTGCTGCTGCTGGTGGTGGTGGTGGTGGTTCGCCTGCGAATCGTCCTACCACGTTGGCCGTACGTCCACCGGCGGGTGGCTACTACGGTGGCGGTGGTCCGCGTACCACGCCACCACCACCGATGCGACCGAACCGAACGGCACCACCGTGTCCACAGCCGTCGGGGCACAGCAATGGTTCGCTGACGACTTCCACCATCACGACGACGGCGAGCAGCAGTGCCGAGCTGCTCGACCGGGAGGTGCTGCTGCTGGCGGCGGAAGTCGAACAGCTGCAGAAGGAGGTGGACACGTGCGACGACGAGGAGGCGCGG] [-] EMBL AGA283991 [CAGCAGTACCAACAGGGAGCTTCGATGGCCGGGAATCACACTGGCTACAGTGATAGTAGATTTATAGTAGAGAACCGAAGTGCTGCTGCTGGTGGTGGTGGTGGTGGTTCGCCTGCGAATCGTCCTACCACGTTGGCCGTACGTCCACCGGCGGGTGGCTACTACGGTGGCGGTGGTCCGCGTACCACGCCACCACCACCGATGCGACCGAACCGAACGGCACCACCGTGTCCACAGCCGTCGGGGCACAGCAATGGTTCGCTGACGACTTCCACCATCACGACGACGGCGAGCAGCAGTGCCGAGCTGCTCGACCGGGAGGTGCTGCTGCTGGCGGCGGAAGTCGAACAGCTGCAGAAGGAGGTGGACACGTGCGACGACGAGGAGGCGCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5022#0 GGCAGCGGCGGTACGACGAGCGCGACCGACAGCAGCAGCAGCAGCAACAGTATCCTGAAG 60 consensus_5022#2 ------------------------------------------------------------ consensus_5022#1 ------------------------------------------------------------ consensus_5022#0 CAGCGCGCGACCTGTGCCTGCTCGAACATCAGCATTATGCAGCTGTTCCACGAGATGAAG 120 consensus_5022#2 ------------------------------------------------------------ consensus_5022#1 ------------------------------------------------------------ consensus_5022#0 CAGAAGTACCCAACCGTACCGGACACGGTCGTGTCCGAGCTGGTGACGCAGAACTGTCAC 180 consensus_5022#2 ------------------------------------------------------------ consensus_5022#1 ------------------------------------------------------------ consensus_5022#0 GATCGGCCGGCCTGCATCGGCAAGCTGGAGGAGGCCGTGCTGGGAACGCCCGCCCAAACG 240 consensus_5022#2 ------------------------------------------------------------ consensus_5022#1 ------------------------------------------------------------ consensus_5022#0 ACCTACCCGGCACAGTCGATACACAGTGGCAGCCTGAAGCGGCGCGAACGGAAGCTGGGC 300 consensus_5022#2 ------------------------------------------------------------ consensus_5022#1 ------------------------------------------------------------ consensus_5022#0 GGTGGCAACGGCCGGTCAGACGGCAGCTACAGCAGCAGCAACAGCAGCAGCAACAGCAGC 360 consensus_5022#2 ------------------------------------------------------------ consensus_5022#1 ------------------------------------------------------------ consensus_5022#0 CGGGAGAGCAGTGTCGACAGTAGCAGGCTACAGGGAACTGCATGCCCCGCCACGTCGCCT 420 consensus_5022#2 ------------------------------------------------------------ consensus_5022#1 -------GCAGAATCCGCACGAGGAGGACATCACTACAGCAAGGCTTC--CGAAACCTAT 51 consensus_5022#0 CAGCAGCAGCAGCAGTACCAACAGGGAGCTTCGATGGCCGGGAATCACACTGGCTACAGT 480 consensus_5022#2 ---------CAGCAGTACCAACAGGGAGCTTCGATGGCCGGGAATCACACTGGCTACAGT 51 consensus_5022#1 GGTTGGCTGCACATTTTCATATACCTAAATGAGCCCATCGAGGATGGCA--GAGTATGGC 109 ** * * * * * * * ** * ** ** * ** * consensus_5022#0 GATAGTAGATTTATAGTAGAGAACCGAAGTGCT-GCTGCTGCTGGTGGTGGTGGTG-GTG 538 consensus_5022#2 GATAGTAGATTTATAGTAGAGAACCGAAGTGCT-GCTGC---TGGTGGTGGTGGTG-GTG 106 consensus_5022#1 GACTAATCCTTTCAAGCAAGCGCCCGCAGTACCCAGCACGACCCAAAGCAGCAACACACC 169 ** *** ** * *** *** * * * * consensus_5022#0 GTTCGCCTGCGA-------ATCGTCCTACCACGTTGGCCGTACGTC----CACCGGCGGG 587 consensus_5022#2 GTTCGCCTGCGA-------ATCGTCCTACCACGTTGGCCGTACGTC----CACCGGCGGG 155 consensus_5022#1 GCACAGTTACGATGAACCGGACGCACCGCCATACTGTACGTACGCTTCCGCAGCAACCGC 229 * * * *** ** * *** ** ****** ** * * * consensus_5022#0 TGGACTACCAGGGGGGGGGGGGGGGTCCGCGTACCACGCCACCACCACCGATGCGA-CCG 646 consensus_5022#2 TGG-CTACTACGGTGGCGGT---GGTCCGCGTACCACGCCACCACCACCGATGCGA-CCG 210 consensus_5022#1 TGCGCTACATCGACGCCGAGCTGCTCGACCGGGAGGTGCTGCTGCTGGCGGCGGAAGTCG 289 ** **** * * * ** ** * * ** * * ** consensus_5022#0 AACCG------AACGGCACCACCGTGTCCACAGCCGTCGGGGCACAGCAATGGTTCGCTG 700 consensus_5022#2 AACCG------AACGGCACCACCGTGTCCACAGCCGTCGGGGCACAGCAATGGTTCGCTG 264 consensus_5022#1 AACAGCTGCAGAAGGAGGTGGACACGTGCGATGACGAGGAGGCCCGGGTGCAGGCTGC-G 348 *** * ** * * ** * * ** * *** * * * ** * consensus_5022#0 ACGACTTCCACCATCACGACGACGG-CGAGCAGCA-GTGCCGAGCTGGGCGAAACGGTGA 758 consensus_5022#2 ACGACTTCCACCATCACGACGACGG-CGAGCAGCA-GTGCCGAGCTGCTCGACCGGGAGG 322 consensus_5022#1 GCCGCAGCCGGCACCTCAATAACGGACGGGCTGAGTGCGCTGAGC--GTCGAGGGTGGTT 406 * * ** ** * * * **** ** ** * * ** **** *** * consensus_5022#0 ACCTG------------------------------------------------------- 763 consensus_5022#2 TGCTGCTGCTGGCGGCGGAAGTCGAACAGCTGCAGAAGGAGGTGGACACGTGCGACGACG 382 consensus_5022#1 CACCGCTGATGCTTCCTACATCGGTAGTGTCCGGCGCGGCGGTCATGAATCGCCCGCACG 466 * * consensus_5022#0 ----------- consensus_5022#2 AGGAGGCGCGG 393 consensus_5022#1 CGAACAC---- 473 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||