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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5042#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 914 fasta sequence
[CCTAGGCAAGAATGCCCCGAGGTTTATACGCCGGAAGCGGCACTGGCCAAGCTGTCGTACGTTGCTGAGCAACGCACGCGAGTGGGACTGGGAGACGAAGCAAGTAAGATGATAGAACGAGTAATCTAGTGCGGAGAGCTCACCTGTGAAAAGCCGCCGGAAATGCAAGAGTACGATACTGATCGATGCCGTTGCACGTACGCTGCATCTATACGTCCACCAAAGAACTGGGACAGCTAAAGTCTATCCCTACTATTACCGGCCGANTGGTACANGCACNGGCCGCTGCTGGCTGGCGATGTTGACCAACAGCTGACGAAGCCTTGAAGAAACTAACGGGTGGCAACATAGTNCGGCCCGACAAAACTACGACCCAACCGGGACGTGGCCACGNTGCACGGTGGGCCGTGCTTGCCGCACGGGGCAACCATCGCACGGCATGTGCTTGGCCAAGNGCTAATTCNCTTGGGTATGTCCAAGGCAATACCGGGGCTTGTACCCCCGGCACGGGTAAACCANCAATTNNTNCGGCGGCAAATCCGTGGGTGTAGAACGAAAGTCCGTGNCGATGACCACACNCCNGGACATNNCAAACTTGCATGCCACTTTGCCGTAACATCCCACNTTGCCNGCGCAACGTACCAAAAACCACAAACTNCCCATCAGNGGTCCCGGAACTCNNCCCCGGNAGCCTANTTGGGCCCGCATGGCACNCTTCCAACANCGCANCNTGGCCGNNTAGAGATGGACCCCCCATCACNTCCCATGATAACCCCCCGGGTGCGATNCTCTGTAGCATCATAACGCAGTGAGAATGNGGGATAGTATACGGTGTNCGGAAGCAGTGGGGGTCCCTATGTGATGTTTTGGCCGGGTGCGCCAGCAGNGAGCAGNCCGCCGAATAATAANGCCCA]
[+] EMBL AL695944 [CCTAGGCAAGAATGCCCCGAGGTTTATACGCCGGAAGCGGCACTGGCCAAGCTGTCGTACGTTGCTGAGCAACGCACGCGAGTGGGACTGGGAGACGAAGCAAGTAAGATGATAGAACGAGTAATCTAGTGCGGAGAGCTCACCTGTGAAAAGCCGCCGGAAATGCAAGAGTACGATACTGATCGATGCCGTTGCACGTACGCTGCATCTATACGTCCACCAAAGAACTGGGACAGCTAAAGTCTATCCCTACTATTACCGGCCGANTGGTACANGCACNGGCCGCTGCTGGCTGGCGATGTTGACCAACAGCTGACGAAGCCTTGAAGAAACTAACGGGTGGCAACATAGTNCGGCCCGACAAAACTACGACCCAACCGGGACGTGGCCACGNTGCACGGTGGGCCGTGCTTGCCGCACGGGGCAACCATCGCACGGCATGTGCTTGGCCAAGNGCTAATTCNCTTGGGTATGTCCAAGGCAATACCGGGGCTTGTACCCCCGGCACGGGTAAACCANCAATTNNTNCGGCGGCAAATCCGTGGGTGTAGAACGAAAGTCCGTGNCGATGACCACACNCCNGGACATNNCAAACTTGCATGCCACTTTGCCGTAACATCCCACNTTGCCNGCGCAACGTACCAAAAACCACAAACTNCCCATCAGNGGTCCCGGAACTCNNCCCCGGNAGCCTANTTGGGCCCGCATGGCACNCTTCCAACANCGCANCNTGGCCGNNTAGAGATGGACCCCCCATCACNTCCCATGATAACCCCCCGGGTGCGATNCTCTGTAGCATCATAACGCAGTGAGAATGNGGGATAGTATACGGTGTNCGGAAGCAGTGGGGGTCCCTATGTGATGTTTTGGCCGGGTGCGCCAGCAGNGAGCAGNCCGCCGAATAATAANGCCCA]
consensusID : consensus_5042#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 595 fasta sequence
[GCAGAATTCGGCACGTGGATGACGCCGGAAGCGGCACTGGCCAAGCTGTCGTACGTGCTGAGCAAGCAGGAGTGGGACTGGGAGACGAAGAAGAAGATGATGAAGAGTAATCTGCGCGGAGAGCTCACCTGTGAAAAGCCGCCGGAAATGCAAGAGTACGATCTGATCGATGCCGTTGCACGTACGCTGCATCTTACGTCCACCAAAGAACTGGGACAGCTAAAGTCTTCCCTCTTTCCGGCGATGGTCAGCACGGCCGTGCTGGCTGGCGATGTGACAAAGCTGACGAACCTGAAGAACTACGGTGCCAACATGTCGGCCGAAAACTACGACCACCGGACGGCACTGCACTTGGCGTGCTGCGAGGGCAACATCGAGATGGTGCAGTATCTGTTGCAGAACGGTGCCGCCGTACACATACGCGACCGGTACGATCGCACACCGCT-ATGGATGCGATCATGCACGAGCACCATCAGGCGATCCGGTTGCTGATCAAGTGCGGTGCCCATCTGACCGGCTCGATACGGGGCGATCGGCGATGGGCTGTGTGCGGGCCGCGGNCCGTAACAGCAAGNCCAGACTGGAAATCGTACCG]
[+] EMBL BX469788 [GCAGAATTCGGCACGTGGATGACGCCGGAAGCGGCACTGGCCAAGCTGTCGTACGTGCTGAGCAAGCAGGAGTGGGACTGGGAGACGAAGAAGAAGATGATGAAGAGTAATCTGCGCGGAGAGCTCACCTGTGAAAAGCCGCCGGAAATGCAAGAGTACGATCTGATCGATGCCGTTGCACGTACGCTGCATCTTACGTCCACCAAAGAACTGGGACAGCTAAAGTCTTCCCTCTTTCCGGCGATGGTCAGCACGGCCGTGCTGGCTGGCGATGTGACAAAGCTGACGAACCTGAAGAACTACGGTGCCAACATGTCGGCCGAAAACTACGACCACCGGACGGCACTGCACTTGGCGTGCTGCGAGGGCAACATCGAGATGGTGCAGTATCTGTTGCAGAACGGTGCCGCCGTACACATACGCGACCGGTACGATCGCACACCGCT ATGGATGCGATCATGCACGAGCACCATCAGGCGATCCGGTTGCTGATCAAGTGCGGTGCCCATCTGACCGGCTCGATACGGGGCGATCGGCGATGGGCTGTGTGCGGGCCGCGGNCCGTAACAGCAAGNCCAGACTGGAAATCGTACCG]
[-] EMBL AGA284461 [ CGTGCTGAGCAACCAGGAGTGGGACTGGGAGACGAAGAAGAAGATGATGAAGAGCAATCTGCGCGGAGAGCTCACCTGTGAAAAGCCGCCGGAAATGCAAGAGTACGATCTGATCGATGCCGTTGCACGTACGCTTCATCTTACGTCCACCAAAGAGCTGGGACAGCTAAAGTCTTCCCTCTTTCCGGCGATGGTCAGCACGGCCGTGCTGGCTGGCGATGTGACAAAGCTGACGAACCTGAAGAACTACGGTGCCAACATGTCGGCCGAAAACTACGACCACCGGACGGCACTGCACGTGGCGTGCTGCGAGGGCAACATCGAGATGGTGCAGTATCTGCTGCAGAACGGTGCCGCCGTACACATACGCGACCGGTACGATCGCACACCGCTGATGGATGCGATCATGCACGACCACCATCAGGCGATCCGGTTGCTGATCAAGTGCGGTGCCCATCTGACCGGCTCGATAC GGGCGATCGGGGAT ]
consensusID : consensus_5042#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 313 fasta sequence
[AATCCCCGAGGTTTGCGGAGAGCTCACCTGTGAAAAGCCGCCGGAAATGCAAGAGTACGATCTGATCGATGCCGTTGCACGTACGCTGCATCTTACGTCTCACCAAAGAACTGGGACAGCTAAAGTCTTCCCTCTTTCCGGCGATGGTCAGCACGGCCGTGCTGGCTGGCGATGTGACAAAGCTGACGAACCTGAAGAACTACGGTGCCAACATGTCGGCCGAAAACTACGACCACCTGGACTGGCACTGCACGTGGCGTGCTGCGAGTGGCAACATCGAGATGGTGCAGTATCTTGTTGCAGAACGGTGCCG]
[+] EMBL AL931636 [AATCCCCGAGGTTTGCGGAGAGCTCACCTGTGAAAAGCCGCCGGAAATGCAAGAGTACGATCTGATCGATGCCGTTGCACGTACGCTGCATCTTACGTCTCACCAAAGAACTGGGACAGCTAAAGTCTTCCCTCTTTCCGGCGATGGTCAGCACGGCCGTGCTGGCTGGCGATGTGACAAAGCTGACGAACCTGAAGAACTACGGTGCCAACATGTCGGCCGAAAACTACGACCACCTGGACTGGCACTGCACGTGGCGTGCTGCGAGTGGCAACATCGAGATGGTGCAGTATCTTGTTGCAGAACGGTGCCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5042#1 -----GCAGAATTCGGCACGTGGATGA--CGCCGGAAGCGGCACTGGCCAAGCTGTCGTA 53
consensus_5042#2 ------------------------------------------------------------
consensus_5042#0 CCTAGGCAAGAAT-GCCCCGAGGTTTATACGCCGGAAGCGGCACTGGCCAAGCTGTCGTA 59
consensus_5042#1 CGT-GCTGAGCAA---GCAGGAGTGGGACTGGGAGACGAAGAAG--AAGATGATGAA--G 105
consensus_5042#2 ------------------------------------------------------AAT--C 4
consensus_5042#0 CGTTGCTGAGCAACGCACGCGAGTGGGACTGGGAGACGAAGCAAGTAAGATGATAGAACG 119
consensus_5042#1 AGTAATCT-GCGCGGAGAGCTCACCTGTGAAAAGCCGCCGGAAATGCAAGAGTACGAT-C 163
consensus_5042#2 CCCGAGGT-TTGCGGAGAGCTCACCTGTGAAAAGCCGCCGGAAATGCAAGAGTACGAT-C 62
consensus_5042#0 AGTAATCTAGTGCGGAGAGCTCACCTGTGAAAAGCCGCCGGAAATGCAAGAGTACGATAC 179
* * *********************************************** *
consensus_5042#1 TGATCGATGCCGTTGCACGTACGCTGCATCT-TACGTC-CACCAAAGAACTGGGACAGCT 221
consensus_5042#2 TGATCGATGCCGTTGCACGTACGCTGCATCT-TACGTCTCACCAAAGAACTGGGACAGCT 121
consensus_5042#0 TGATCGATGCCGTTGCACGTACGCTGCATCTATACGTC-CACCAAAGAACTGGGACAGCT 238
******************************* ****** *********************
consensus_5042#1 AAAGTCTTCCCTC----TTTCCGGC--GATGGTC--AGCACGG-CCG-TGCTGGCTGGCG 271
consensus_5042#2 AAAGTCTTCCCTC----TTTCCGGC--GATGGTC--AGCACGG-CCG-TGCTGGCTGGCG 171
consensus_5042#0 AAAGTCTATCCCTACTATTACCGGCCGANTGGTACANGCACNGGCCGCTGCTGGCTGGCG 298
******* ** ** ***** **** **** * *** ************
consensus_5042#1 ATGT-GACAAA--GCTGACGAA--CCTGAAGAA-CTAC--GGTGCCAACATG--TCGGCC 321
consensus_5042#2 ATGT-GACAAA--GCTGACGAA--CCTGAAGAA-CTAC--GGTGCCAACATG--TCGGCC 221
consensus_5042#0 ATGTTGACCAACAGCTGACGAAGCCTTGAAGAAACTAACGGGTGGCAACATAGTNCGGCC 358
**** *** ** ********* * ******* *** **** ****** *****
consensus_5042#1 GAAAACTACGACCACC-GGAC-GGCACTGCACTTGGCGTGCTGCGAG-GGCAACATCGAG 378
consensus_5042#2 GAAAACTACGACCACCTGGACTGGCACTGCACGTGGCGTGCTGCGAGTGGCAACATCGAG 281
consensus_5042#0 CGACAAAACTACGACCCAACCGGGACGTGGCCACGNTGCACGGTGGGCCGTGCTTGCCGC 418
* * ** ** *** * ** ** * * * * * * * * *
consensus_5042#1 ATGGTGCAGT-ATCT-GTTGCAGAACGGTGCCGCCGTACACATACGC---GACCGGTACG 433
consensus_5042#2 ATGGTGCAGT-ATCTTGTTGCAGAACGGTGCCG--------------------------- 313
consensus_5042#0 ACGGGGCAACCATCGCACGGCATGTGCTTGGCCAAGNGCTAATTCNCTTGGGTATGTCCA 478
* ** *** *** *** ** *
consensus_5042#1 ATCGCACACCGCTATGGATGCGATCATGCACGAGCA--CCATCAGGCGATCCGGTTGCTG 491
consensus_5042#2 ------------------------------------------------------------
consensus_5042#0 AGGCAATACCGGGGCTTGTACCCCCG-GCACGGGTAAACCANCAATTNNTNCGGCGGCAA 537
consensus_5042#1 ATCAA-GTGCGGTGCCCATCTGACCGGCTCGAT-ACGGGGCGATCGGCGATGGGCTGTGT 549
consensus_5042#2 ------------------------------------------------------------
consensus_5042#0 ATCCGTGGGTGTAGAACGAAAGTCCGTGNCGATGACCACACNCCNGGACATNNCAAACTT 597
consensus_5042#1 GCGGGCCGCGGN-CCGTAACAGCAAGNCCAGACTGGAAATCGTACCG------------- 595
consensus_5042#2 ------------------------------------------------------------
consensus_5042#0 GCATGCCACTTTGCCGTAACATCCCACNTTGCCNGCGCAACGTACCAAAAACCACAAACT 657
consensus_5042#1 ------------------------------------------------------------
consensus_5042#2 ------------------------------------------------------------
consensus_5042#0 NCCCATCAGNGGTCCCGGAACTCNNCCCCGGNAGCCTANTTGGGCCCGCATGGCACNCTT 717
consensus_5042#1 ------------------------------------------------------------
consensus_5042#2 ------------------------------------------------------------
consensus_5042#0 CCAACANCGCANCNTGGCCGNNTAGAGATGGACCCCCCATCACNTCCCATGATAACCCCC 777
consensus_5042#1 ------------------------------------------------------------
consensus_5042#2 ------------------------------------------------------------
consensus_5042#0 CGGGTGCGATNCTCTGTAGCATCATAACGCAGTGAGAATGNGGGATAGTATACGGTGTNC 837
consensus_5042#1 ------------------------------------------------------------
consensus_5042#2 ------------------------------------------------------------
consensus_5042#0 GGAAGCAGTGGGGGTCCCTATGTGATGTTTTGGCCGGGTGCGCCAGCAGNGAGCAGNCCG 897
consensus_5042#1 -----------------
consensus_5042#2 -----------------
consensus_5042#0 CCGAATAATAANGCCCA 914
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||