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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5045#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1561 fasta sequence
[GAAAACAAACACGATTCCCCATTCATTTCTGTTGCTGTTTCCCATTTCCTTTTCACTTTCTATGCCGTTCTTGCATTGTAGTATAAAGTAAAACCACACATTCCAAGGGAATAATTTGAATTTGTTTTTTCGAAGGAAATGGGAGGTATATGTTGTTGGGTTCATGAGAATAGTGTTTTGGGGGGTGCAGCAAATGGAAAATTTTGAAGTCCCTTCTTTTTTTTTGGCATGATTTGAATGTAAATTTTGGGTTCATTTTTTTACAGCAAAAATGCACCACCACCGTCGCATAGAAAAAGCATAAAACGGTCACAAAACAAAACGTTTCAACAACAAACTGTTCGCTGATCACGTTCGCTCGACGACGCATGACACGCATCATCCAGCAATGGGCAGTAGTGTGTGTGTCGTCAAAAGGATCACGTTCACAATAGGATGTCTTCTGCTGTAAGGAGAATCGTCGTGGCCGTGACAGACAGCCAAACGTATATCCATCCATCTTATGTGGGGAGGGGGATGATTTAAAACAACTGAGCAAGTCCCCTCTCTTTTTTTCTTACTACAAAACCGGATGTGCTCATACCGGAGTGATAAAGGGGAAAAGTGATAGAAGAAAAAGTGTATCAGAGTTCGGGTGAAACTGGGCACGGTTTCCACCTGCTCCAAATACAAGCGGCGCTCTCACACTAGTAGAGTAACATCCGTCGTTCAAATACGGCATATATGAAGGTGATTGGGAGACAATTCTTCCGCAAACAAAAAACGACCCCGTCTTCTTTATAGCTGTCTTCGGAAGTGTTGTTCGCTTGCTAGAAGTAAAAGAATGTAATTTTCCAAGCATCCCCTGTATTTTCGTCGCATTATTAGCACCTGAACGAAAGAATCTATTCCGTGTTTGCTTGTCTGTGTATGTTCCCACATTACAACAATTGTGGTTCCCTTTTATATGTTTTCTCTTTTCTCTGATTGTTTCTGCTTTGCTATAGGTTGTGCTGGCCCTTATTGAGTTCGATATTGATCTTGCTTTTCTTTCCCTTTCGAATTATTTATTTTCTCTGACTTCATAAAGAATAAAATCATAAAAATATTTTCGCACACGATCGCACACGATCGCACCACACACACACACGCTCTAATCGCACTCATAAAAATGTAGTTTTGTTGTGTGAGATCCACAATCCCACCCAGCCCAGCAATTTGTTCCAGGTGTGTTTGTCACCCTTACACACTGTGAGCCTGCCTGGTGGGTGGAGGGCTTGTGGAACCATTCGCGCGTACACACACACACACACACACACACACAATTAGCTCTTTTCACACACGTAGTTTTAAACAATGTACAAAACACAGGTTGATTGGCTCAGCTTATATTACGCCAATGTGCCTCCTTTCTCTTACGTTAATTCTCTCTCAACTAGTTGGAAAGATGCGAACGAAGTGGATGGATGGTGGATAGTAAATTTTTAGAAGAAACTAACGTGAAATGGAAGTAAATTTTTAACGAAATCGCTTTCTTTTCCCCACCGCACATTCTTATTGCTTGTTTAGAAAGGCTTTTAGC]
[+] EMBL CNS08U73 [GAAAACAAACACGATTCCCCATTCATTTCTGTTGCTGTTTCCCATTTCCTTTTCACTTTCTATGCCGTTCTTGCATTGTAGTATAAAGTAAAACCACACATTCCAAGGGAATAATTTGAATTTGTTTTTTCGAAGGAAATGGGAGGTATATGTTGTTGGGTTCATGAGAATAGTGTTTTGGGGGGTGCAGCAAATGGAAAATTTTGAAGTCCCTTCTTTTTTTTTGGCATGATTTGAATGTAAATTTTGGGTTCATTTTTTTACAGCAAAAATGCACCACCACCGTCGCATAGAAAAAGCATAAAACGGTCACAAAACAAAACGTTTCAACAACAAACTGTTCGCTGATCACGTTCGCTCGACGACGCATGACACGCATCATCCAGCAATGGGCAGTAGTGTGTGTGTCGTCAAAAGGATCACGTTCACAATAGGATGTCTTCTGCTGTAAGGAGAATCGTCGTGGCCGTGACAGACAGCCAAACGTATATCCATCCATCTTATGTGGGGAGGGGGATGATTTAAAACAACTGAGCAAGTCCCCTCTCTTTTTTTCTTACTACAAAACCGGATGTGCTCATACCGGAGTGATAAAGGGGAAAAGTGATAGAAGAAAAAGTGTATCAGAGTTCGGGTGAAACTGGGCACGGTTTCCACCTGCTCCAAATACAAGCGGCGCTCTCACACTAGTAGAGTAACATCCGTCGTTCAAATACGGCATATATGAAGGTGATTGGGAGACAATTCTTCCGCAAACAAAAAACGACCCCGTCTTCTTTATAGCTGTCTTCGGAAGTGTTGTTCGCTTGCTAGAAGTA ]
[-] EMBL BX622100 [ TCCAGCAATGGGCAGTAGTGTGTGTGTCGTCAAAAGGATCACGTTCACAATAGGATGTCTTCTGCTGTAAGGAGAATCGTCGTGGCCGTGACAGACAGCCAAACGTATATCCATCCATCTTATGTGGGGAGGGGGATGATTTAAAACAACTGAGCAAGTCCCCTCTCTTAACATCTTACTACAAAACCGGATGTGCTCATACCGGAGTGATAAAGGGGAAAAGTGATAGAAGAAAAAGTGTATCAGAGTTCGGGTGAAACTGGGCACGGTTTCCACCTGCTCCAAATACAAGCGGCGCTCTCACACTAGTAGAGTAACATCCGTCGTTCAAATACGGCATATATGAAGGTGATTGGGAGACAATTCTTCCGCAAACAAAAAACGACCCCGTCTTCTTTATAGCTGTCTTCGGAAGTGTTGTTCGCTTGCTAGAAGTAAAAGAATGTAATTTTCCAAGCATCCCCTGTATTTTCGTCGCATTATTAGCACCTGAACGAAAGAATCTATTCCGTGTTTGCTTGTCTGTGTATGTTCCCACATTACAACAATTGTGG ]
[-] EMBL BX621940 [ AGAATCTATTCCGTGTTTGCTTGTCTGTGTATGTTCCCACATTACAACAATTGTGGTTCCCTTTTATATGTTTTCTCTTTTCTCTGATTGTTTCTGCTTTGCTATAGGTTGTGCTGGCCCTTATTGAGTTCGATATTGATCTTGCTTTTCTTTCCCTTTCGAATTATTTATTTTCTCTGACTTCATAAAGAATAAAATCATAAAAATATTTTCGCACACGATCGCACACGATCGCACCACACACACACACGCTCTAATCGCACTCATAAAAATGTAGTTTTGTTGTGTGAGATCCACAATCCCACCCAGCCCAGCAATTTGTTCCAGGTGTGTTTGTCACCCTTACACACTGTGAGCCTGCCTGGTGGGTGGAGGGCTTGTGGAACCATTCGCGCGTACACACACACACACACACACACACACAATTAGCTCTTTTCACACACGTAGTTTTAAACAATGTACAAAACACAGGTTGATTGGCTCAGCTTATATTACGCCAATGTGCCTCCTTTCTCTTACGTTAATTCTCTCTCAACTAGTTGGAAAGATGCGAACGAAGTGGATGGATGGTGGATAGTAAATTTTTAGAAGAAACTAACGTGAAATGGAAGTAAATTTTTAACGAAATCGCTTTCTTTTCCCCACCGCACATTCTTATTGCTTGTTTAGAAAGGCTTTTAGC]
consensusID : consensus_5045#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 530 fasta sequence
[ACGATCGGAAAAACACACACACGCTCTAATCGCACTGCATAAAAATGTCGTTTTGTTGTGTGAGATCCACAATCCCACCCCCAGCAGCAATTTGTTCCAGGTGTGTTTGTCACCCTTACACACTGTGAGCCTGCCTGGTGGGTGGAGGGCTTGTGGAACCATTCGCGCGCGCACACACACACACACACACACACACACACACACTAAATATAGCTCTTTTCACAAAAATAGTTTTAAACAATGTACAAAGCACAGGTTGATTGGCTCAGCTTATACTACGCCAATGTGCCTCCTTCTCTTACGTTAATTCTCTCTCAACTAGTTGGAAAGATGCGAACGAAGTGGATGGATGGTGGATAGTAAATTTTTAGAAGAAACTAACGTGAAATGGAAGTAAATTTTTAACGAAATCGCTTTCTTTTCCTCCACCGCTTGTTTCTTATTGCTTGTTTAGAAAGGCTTTTAGCTCAAAATTTGGGTGTCCATTAGCAATCATCTAATTTTGATAAACAAAGTCAAGGAGTAAAAAG]
[-] EMBL CNS08U72 [ACGATCGGAAAAACACACACACGCTCTAATCGCACTGCATAAAAATGTCGTTTTGTTGTGTGAGATCCACAATCCCACCCCCAGCAGCAATTTGTTCCAGGTGTGTTTGTCACCCTTACACACTGTGAGCCTGCCTGGTGGGTGGAGGGCTTGTGGAACCATTCGCGCGCGCACACACACACACACACACACACACACACACACTAAATATAGCTCTTTTCACAAAAATAGTTTTAAACAATGTACAAAGCACAGGTTGATTGGCTCAGCTTATACTACGCCAATGTGCCTCCTTCTCTTACGTTAATTCTCTCTCAACTAGTTGGAAAGATGCGAACGAAGTGGATGGATGGTGGATAGTAAATTTTTAGAAGAAACTAACGTGAAATGGAAGTAAATTTTTAACGAAATCGCTTTCTTTTCCTCCACCGCTTGTTTCTTATTGCTTGTTTAGAAAGGCTTTTAGCTCAAAATTTGGGTGTCCATTAGCAATCATCTAATTTTGATAAACAAAGTCAAGGAGTAAAAAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5045#0 GAAAACAAACACGATTCCCCATTCATTTCTGTTGCTGTTTCCCATTTCCTTTTCACTTTC 60
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 TATGCCGTTCTTGCATTGTAGTATAAAGTAAAACCACACATTCCAAGGGAATAATTTGAA 120
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 TTTGTTTTTTCGAAGGAAATGGGAGGTATATGTTGTTGGGTTCATGAGAATAGTGTTTTG 180
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 GGGGGTGCAGCAAATGGAAAATTTTGAAGTCCCTTCTTTTTTTTTGGCATGATTTGAATG 240
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 TAAATTTTGGGTTCATTTTTTTACAGCAAAAATGCACCACCACCGTCGCATAGAAAAAGC 300
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 ATAAAACGGTCACAAAACAAAACGTTTCAACAACAAACTGTTCGCTGATCACGTTCGCTC 360
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 GACGACGCATGACACGCATCATCCAGCAATGGGCAGTAGTGTGTGTGTCGTCAAAAGGAT 420
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 CACGTTCACAATAGGATGTCTTCTGCTGTAAGGAGAATCGTCGTGGCCGTGACAGACAGC 480
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 CAAACGTATATCCATCCATCTTATGTGGGGAGGGGGATGATTTAAAACAACTGAGCAAGT 540
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 CCCCTCTCTTTTTTTCTTACTACAAAACCGGATGTGCTCATACCGGAGTGATAAAGGGGA 600
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 AAAGTGATAGAAGAAAAAGTGTATCAGAGTTCGGGTGAAACTGGGCACGGTTTCCACCTG 660
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 CTCCAAATACAAGCGGCGCTCTCACACTAGTAGAGTAACATCCGTCGTTCAAATACGGCA 720
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 TATATGAAGGTGATTGGGAGACAATTCTTCCGCAAACAAAAAACGACCCCGTCTTCTTTA 780
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 TAGCTGTCTTCGGAAGTGTTGTTCGCTTGCTAGAAGTAAAAGAATGTAATTTTCCAAGCA 840
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 TCCCCTGTATTTTCGTCGCATTATTAGCACCTGAACGAAAGAATCTATTCCGTGTTTGCT 900
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 TGTCTGTGTATGTTCCCACATTACAACAATTGTGGTTCCCTTTTATATGTTTTCTCTTTT 960
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 CTCTGATTGTTTCTGCTTTGCTATAGGTTGTGCTGGCCCTTATTGAGTTCGATATTGATC 1020
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 TTGCTTTTCTTTCCCTTTCGAATTATTTATTTTCTCTGACTTCATAAAGAATAAAATCAT 1080
consensus_5045#1 ------------------------------------------------------------
consensus_5045#0 AAAAATATTTTCGCACACGATCGCACACGATCGCACCACACACACACACGCTCTAATCGC 1140
consensus_5045#1 --------------------------ACGATCGGAA-AAACACACACACGCTCTAATCGC 33
******* * * *********************
consensus_5045#0 ACT-CATAAAAATGTAGTTTTGTTGTGTGAGATCCACAATCCCACCCAGCCCAGCAATTT 1199
consensus_5045#1 ACTGCATAAAAATGTCGTTTTGTTGTGTGAGATCCACAATCCCACCCCCAGCAGCAATTT 93
*** *********** ******************************* *********
consensus_5045#0 GTTCCAGGTGTGTTTGTCACCCTTACACACTGTGAGCCTGCCTGGTGGGTGGAGGGCTTG 1259
consensus_5045#1 GTTCCAGGTGTGTTTGTCACCCTTACACACTGTGAGCCTGCCTGGTGGGTGGAGGGCTTG 153
************************************************************
consensus_5045#0 TGGAACCATTCGCGCGTACACACACACACACACACACACACACA----------AT-TAG 1308
consensus_5045#1 TGGAACCATTCGCGCGCGCACACACACACACACACACACACACACACACACTAAATATAG 213
**************** ************************** ** ***
consensus_5045#0 CTCTTTTCACACACGTAGTTTTAAACAATGTACAAAACACAGGTTGATTGGCTCAGCTTA 1368
consensus_5045#1 CTCTTTTCACAAAAATAGTTTTAAACAATGTACAAAGCACAGGTTGATTGGCTCAGCTTA 273
*********** * ********************* ***********************
consensus_5045#0 TATTACGCCAATGTGCCTCCTTTCTCTTACGTTAATTCTCTCTCAACTAGTTGGAAAGAT 1428
consensus_5045#1 TACTACGCCAATGTGCCTCCTT-CTCTTACGTTAATTCTCTCTCAACTAGTTGGAAAGAT 332
** ******************* *************************************
consensus_5045#0 GCGAACGAAGTGGATGGATGGTGGATAGTAAATTTTTAGAAGAAACTAACGTGAAATGGA 1488
consensus_5045#1 GCGAACGAAGTGGATGGATGGTGGATAGTAAATTTTTAGAAGAAACTAACGTGAAATGGA 392
************************************************************
consensus_5045#0 AGTAAATTTTTAACGAAATCGCTTTCTTTTCC-CCACCGCACATT-CTTATTGCTTGTTT 1546
consensus_5045#1 AGTAAATTTTTAACGAAATCGCTTTCTTTTCCTCCACCGCTTGTTTCTTATTGCTTGTTT 452
******************************** ******* ** **************
consensus_5045#0 AGAAAGGCTTTTAGC--------------------------------------------- 1561
consensus_5045#1 AGAAAGGCTTTTAGCTCAAAATTTGGGTGTCCATTAGCAATCATCTAATTTTGATAAACA 512
***************
consensus_5045#0 ------------------
consensus_5045#1 AAGTCAAGGAGTAAAAAG 530
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||