cluster # 5047

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Anopheles gambiae
cluster # 5047 cluster # 5047 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5047#0 length = 875 sequences # 3

consensus_5047#1 length = 566 sequences # 1

consensusID : consensus_5047#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 875
fasta sequence

                              [AGACAACAAGCGTACATCCGGTACACCTCCCTGGCTTTGGGAGATCTTGTCTGTGGGGGAAGGCAGTCTGCTAGCTGGGGCAAGCGGCGAGAAACATCACATTTGTCAAGCTGTTATAATTAAGACACGTTCCATTCCTCTGTCCACCGTCGATGACACCGTCGAGATGAGTAATGGTCTCGTTCTCTGTCACATCTGTCTCTTACTCACTCTATCAATCTGTCTCTCTCTCTCTCTCTCTTTCCGTATATTTCAGGTCGGTGCTGACGGTTACAACTCCCTGGTGCGCCGGCAGATGGGCGTCCAAAACTTTGCCCTCGCCTACAACCAGATGGGTGTGGTGGCAACGCTTCGACTGGCCAACGCGCCAAGCGACAACGTGACCGCCTGGCAGCGCTTCCTGCCGACCGGCCCGATCGCTCTACTGCCCCTCAGCGACGACACCAGCTCGCTCGTGTGGTCCACCGGTGTGGCGGAGGCGAAGCGACTGCTTCAGCTGGACGGCGACTCCTTCATTGCGGCCGTCAATGCCGCCTTCCACAAACCGATGCCAC-GGAACACGCTGGTCGACGATGTGATGAAGGGTGTCCACTCGCTGATCAAACAAACGACCGGACAGCGCCTGGAAGCGGCACCAGTTGTCGAGGCGGAAGTGGCCAGTTCGCGGGCCGCCTTCCCGCTCGGACTCGGCCACACGAGCACCTACGTTGGGCAGGGCGTCTGTCTGATCGGTGACGCAGCGCACCGGGTCCATCCACTGGCCGGGCAGGGCGTTAATCTGGGCTTCGGCGACGTGCAGATGCTGGTGGACGTGCTGGCCGACGCTAACTATGCCGGGCTCGGCATCAGCAACGTCAGCGAGCTGCTCAAGTACG]

[+] EMBL BX604244             [AGACAACAAGCGTACATCCGGTACACCTCCCTGGCTTTGGGAGATCTTGTCTGTGGGGGAAGGCAGTCTGCTAGCTGGGGCAAGCGGCGAGAAACATCACATTTGTCAAGCTGTTATAATTAAGACACGTTCCATTCCTCTGTCCACCGTCGATGACACCGTCGAGATGAGTAATGGTCTCGTTCTCTGTCACATCTGTCTCTTACTCACTCTATCAATCTGTCTCTCTCTCTCTCTCTCTTTCCGTATATTTCAGGTCGGTGCTGACGGTTACAACTCCCTGGTGCGCCGGCAGATGGGCGTCCAAAACTTTGCCCTCGCCTACAACCAGATGGGTGTGGTGGCAACGCTTCGACTGGCCAACGCGCCAAGCGACAACGTGACCGCCTGGCAGCGCTTCCTGCCGACCGGCCCGATCGCTCTACTGCCCCTCAGCGACGACACCAGCTCGCTCGTGTGGTCCACCGGTGTGGCGGAGGCGAAGCGACTGCTTCAGCTGGACGGCGACTCCTTCATTGCGGCCGTCAATGCCGCCTTCCACAAACCGATGCCACGGGAACACGCTGGg                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BM611590             [                                                                                                                                                                                                                                                                                                                                                                                       ccgCGTGACCGCCTGGCAGCGCTTCCTGCCGACCGGCCCGATCGCCCTGCTGCCCCTCAGCGACGACACCAGCTCGCTCGTGTGGTCCACCGGTGTGGCGGAGGCGAAGCGACTGCTTCAGCTGGACGGCGACTCCTTCATTGCGGCCGTCAATGCCGCCTTCCACAAACCGATGCCAC GGAACACGCTGGTCGACGATGTGATGAAGGGTGTCCACTCGCTGATCAAACAAACGACCGGACAGCGCCTGGAAGCGGCACCAGTTGTCGAGGCGGAAGTGGCCAGTTCGCGGGCCGCCTTCCCGCTCGGACTCGGCCACACGAGCACCTACGTTGGGCAGGGCGTCTGTCTGATCGGTGACGCAGCGCACCGGGTCCATCCACTGGCCGGGCAGGGCGTTAATCTGGGCTTCGGCGACGTGCAGATGCTGGTGGACGTGCTGGCCGACGCTAACTATGCCGGGCTCGGCATCAGCAACGTCAGCGAGCTGCTCAAGTACG]
[+] EMBL AGA284620            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           CTCCTTCATTGCGGCCGTCAATGCCGCCTTCCACAAACCGATGCCAC GGAACACGCTGGTCGACGATGTGATGAAGGGTGTCCACTCGCTGATCAAACAAACGACCGGACAGCGCCTGGAGGCGGCACCAGTTGTCGAGGCGGAAGTGGCCAGTTCGCGGGCCGCCTTCCCGCTCGGACTCGGCCACACGAGCACCTACGTTGGGCAGGGCGTCTGTCTGATTGGTGACGCAGCGCACCGGGTCCATCCACTGGGCGGGCAGGGCGTTTATCTGGGCTTCGGCGACGTGCAGACGCTGGTGGACGTGC                                                            ]




>consensus_5047#0
AGACAACAAGCGTACATCCGGTACACCTCCCTGGCTTTGGGAGATCTTGTCTGTGGGGGA
AGGCAGTCTGCTAGCTGGGGCAAGCGGCGAGAAACATCACATTTGTCAAGCTGTTATAAT
TAAGACACGTTCCATTCCTCTGTCCACCGTCGATGACACCGTCGAGATGAGTAATGGTCT
CGTTCTCTGTCACATCTGTCTCTTACTCACTCTATCAATCTGTCTCTCTCTCTCTCTCTC
TTTCCGTATATTTCAGGTCGGTGCTGACGGTTACAACTCCCTGGTGCGCCGGCAGATGGG
CGTCCAAAACTTTGCCCTCGCCTACAACCAGATGGGTGTGGTGGCAACGCTTCGACTGGC
CAACGCGCCAAGCGACAACGTGACCGCCTGGCAGCGCTTCCTGCCGACCGGCCCGATCGC
TCTACTGCCCCTCAGCGACGACACCAGCTCGCTCGTGTGGTCCACCGGTGTGGCGGAGGC
GAAGCGACTGCTTCAGCTGGACGGCGACTCCTTCATTGCGGCCGTCAATGCCGCCTTCCA
CAAACCGATGCCACGGAACACGCTGGTCGACGATGTGATGAAGGGTGTCCACTCGCTGAT
CAAACAAACGACCGGACAGCGCCTGGAAGCGGCACCAGTTGTCGAGGCGGAAGTGGCCAG
TTCGCGGGCCGCCTTCCCGCTCGGACTCGGCCACACGAGCACCTACGTTGGGCAGGGCGT
CTGTCTGATCGGTGACGCAGCGCACCGGGTCCATCCACTGGCCGGGCAGGGCGTTAATCT
GGGCTTCGGCGACGTGCAGATGCTGGTGGACGTGCTGGCCGACGCTAACTATGCCGGGCT
CGGCATCAGCAACGTCAGCGAGCTGCTCAAGTACG

consensusID : consensus_5047#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 566
fasta sequence

                              [GATCGCCCCGAGGTTTACGATGCCACGGAACACGCTGGTCGACGATGTGATNAAGGGTGTCCACTCGCTGATCAAACAAAGCGACCGGACAGCGCCTGGAAGCGACAACGTGACCGCCTGGCAGCGCTTCCTGCCGACCGGCCCGATCGCTCTACTGCCCCTCAGACGACGACACTGAGCACCTACGATTGGGCAGGGCGTCTGTCTGATTGGTGACGCACGCTGCACCNGGGTCCATCCACTGGCCGGGCAGGGCGTTAATCTGGGCTTCGGCGACGTGCAGACGCTGGTGGACGTGCTGGCCGACGCTAACTATGCCGGGCTCGGCATCAGCAACGTCAGCGAGCTGCTCAAGTACGAGCAGCAGCGGCTGAAGCACAACGTGCCCGTCCTGTCACCACGCACAGCCTGCAGCGGCTTTACACCACCGACTTCGTGCCGACGTCGCACTGCGCAGCATCTGGGCTAACGCTGACCAACGCGTTGNCACCGGTCAAGAAATTCTTGATGAACTACGCCATGTCCTAAAGCTGCGCAACTCTGGAAGCGACGGTACCAAAGAGGCA]

[+] EMBL AL697553             [GATCGCCCCGAGGTTTACGATGCCACGGAACACGCTGGTCGACGATGTGATNAAGGGTGTCCACTCGCTGATCAAACAAAGCGACCGGACAGCGCCTGGAAGCGACAACGTGACCGCCTGGCAGCGCTTCCTGCCGACCGGCCCGATCGCTCTACTGCCCCTCAGACGACGACACTGAGCACCTACGATTGGGCAGGGCGTCTGTCTGATTGGTGACGCACGCTGCACCNGGGTCCATCCACTGGCCGGGCAGGGCGTTAATCTGGGCTTCGGCGACGTGCAGACGCTGGTGGACGTGCTGGCCGACGCTAACTATGCCGGGCTCGGCATCAGCAACGTCAGCGAGCTGCTCAAGTACGAGCAGCAGCGGCTGAAGCACAACGTGCCCGTCCTGTCACCACGCACAGCCTGCAGCGGCTTTACACCACCGACTTCGTGCCGACGTCGCACTGCGCAGCATCTGGGCTAACGCTGACCAACGCGTTGNCACCGGTCAAGAAATTCTTGATGAACTACGCCATGTCCTAAAGCTGCGCAACTCTGGAAGCGACGGTACCAAAGAGGCA]




>consensus_5047#1
GATCGCCCCGAGGTTTACGATGCCACGGAACACGCTGGTCGACGATGTGATNAAGGGTGT
CCACTCGCTGATCAAACAAAGCGACCGGACAGCGCCTGGAAGCGACAACGTGACCGCCTG
GCAGCGCTTCCTGCCGACCGGCCCGATCGCTCTACTGCCCCTCAGACGACGACACTGAGC
ACCTACGATTGGGCAGGGCGTCTGTCTGATTGGTGACGCACGCTGCACCNGGGTCCATCC
ACTGGCCGGGCAGGGCGTTAATCTGGGCTTCGGCGACGTGCAGACGCTGGTGGACGTGCT
GGCCGACGCTAACTATGCCGGGCTCGGCATCAGCAACGTCAGCGAGCTGCTCAAGTACGA
GCAGCAGCGGCTGAAGCACAACGTGCCCGTCCTGTCACCACGCACAGCCTGCAGCGGCTT
TACACCACCGACTTCGTGCCGACGTCGCACTGCGCAGCATCTGGGCTAACGCTGACCAAC
GCGTTGNCACCGGTCAAGAAATTCTTGATGAACTACGCCATGTCCTAAAGCTGCGCAACT
CTGGAAGCGACGGTACCAAAGAGGCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5047#0      AGACAACAAGCGTACATCCGGTACACCTCCCTGGCTTTGGGAGATCTTGTCTGTGGGGGA 60
consensus_5047#1      ------------------------------------------------------------
                                                                                  

consensus_5047#0      AGGCAGTCTGCTAGCTGGGGCAAGCGGCGAGAAACATCACATTTGTCAAGCTGTTATAAT 120
consensus_5047#1      ------------------------------------------------------------
                                                                                  

consensus_5047#0      TAAGACACGTTCCATTCCTCTGTCCACCGTCGATGACACCGTCGAGATGAGTAATGGTCT 180
consensus_5047#1      ------------------------------------------------------------
                                                                                  

consensus_5047#0      CGTTCTCTGTCACATCTGTCTCTTACTCACTCTATCAATCTGTCTCTCTCTCTCTCTCTC 240
consensus_5047#1      ------------------------------------------------------------
                                                                                  

consensus_5047#0      TTTCCGTATATTTCAGGTCGGTGCTGACGGTTACAACTCCCTGG--TGCGCCGGCAGATG 298
consensus_5047#1      ---------------GATCG-CCCCGAGGTTTACGATGCCACGGAACACGCTGGTCGACG 44
                                     * ***   * ** * **** *  **  **    *** **  ** *

consensus_5047#0      G-GCGTCCAAAACTTTGCCCTCGCCTACAACCAGATGGGTGTGGTGGCAACGCTTCGACT 357
consensus_5047#1      ATGTGATNAAGGGTGTCCACTCGCT---GATCAAA------------CAAAGC---GACC 86
                        * *   **   * * * *****     * ** *            *** **   *** 

consensus_5047#0      GGCCAACGCGCC-AAGCGACAACGTGACCGCCTGGCAGCGCTTCCTGCCGACCGGCCCGA 416
consensus_5047#1      GGACAGCGCCTGGAAGCGACAACGTGACCGCCTGGCAGCGCTTCCTGCCGACCGGCCCGA 146
                      ** ** ***    ***********************************************

consensus_5047#0      TCGCTCTACTGCCCCTCAG-CGACGACACCAGCTCGCTCGTGTGGTCCACCGGTGTGGCG 475
consensus_5047#1      TCGCTCTACTGCCCCTCAGACGACGACACTGA---GCACCTACGATTGGGCAGGGCGTCT 203
                      ******************* *********      ** * *  * *    * * * * * 

consensus_5047#0      GAGGCGAAGCGACTGCTTCAGCTGGACGGCGACTCCTTCATTGCGGCCGTCAATGCCGCC 535
consensus_5047#1      GT--CTGATTGGTGACGCACGCTGCACCNGGGTCCATCCACTG-GCCGGGCAGGGCGTTA 260
                      *   *  *  *    *    **** **   *   * * ** ** * * * **  **    

consensus_5047#0      TTCCACAAACCGATGCCACGGAACACGCTGGTCGACGATGTGATGAAGGGTGTCCACTCG 595
consensus_5047#1      ATCTGGGCTTCGGCGACGTGCAG-ACGCTGGTGGACGTGCTGGCCGACGCTAACTATGCC 319
                       **       **  * *  * *  ******** ****   **    * * *  * *  * 

consensus_5047#0      CTGATCAA-ACAAACGACCGGACAGCGCCTGGAAGCGGCACCAGTTGTCGAGGCGGAAGT 654
consensus_5047#1      GGGCTCGGCATCAGCAAC--GTCAGCGAGCTGCTCAAGTACGAGCAGCAGCGGCTGAAGC 377
                        * **   *  * * **  * *****    *     * ** **  *  * *** **** 

consensus_5047#0      GGCCAGTTCGCGGGCCGCCTTCCCGCTCGGACT----CGGCCACACGAGCACCTACGTTG 710
consensus_5047#1      ACAACGTGCCCGTCCTGTCACCACGCACAGCCTGCAGCGGCTTTAC-ACCACCGACTTCG 436
                           ** * **  * * *  * *** * * **    ****   ** * **** ** * *

consensus_5047#0      GGCAGGGCGTCTGTCTGATCGGTGACGCAGCGCAC-CGGGTCCATCCACTGGC--CGGGC 767
consensus_5047#1      TGCCGA-CGTCGCACTGCGCAGCATCTGGGCTAACGCTGACCAACGCGTTGNCACCGGTC 495
                       ** *  ****   ***  * *   *   **  ** * *  * *  *  ** *  *** *

consensus_5047#0      AGGGCGTTAATCTGGGCTTCGGCGACGTGCAGATGCTGGTGGACGTGCTGGCCGACGCTA 827
consensus_5047#1      AAGAAATTCTTGATGAACTACGCCATGTCCTAAAGCTGCGCAACTCTGGAAGCGACGGTA 555
                      * *   **  *   *   *  ** * ** *  * ****    **        ***** **

consensus_5047#0      ACTATGCCGGGCTCGGCATCAGCAACGTCAGCGAGCTGCTCAAGTACG 875
consensus_5047#1      CCAAAGAGGCA------------------------------------- 566
                       * * *  *