These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5049#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 684 fasta sequence [CGAGCAGATCGCCAGAGGTGNANACGCTCGGACTGGGCAATCTGTACCAGTACATACCGGGTATAGGGCGTTACAGCTTCGATGAGCTGCACCGTTCCGGCGAGGATAAATACCGCCAGTATGGTTCGATCGTGCGCGAAACAATGGTCCCGGGGCAGGATATTGTGTGGCTTTACGATCCGGACGATGTGGCAACCGTGCTGGACGATCGCACACCGGGCATGTACCCGTCGCGACGGAGCCACACGGCGCTGGAAAAATATCGCAAGGATCGTCCGAACGTTTACCGTACCGCCG-GGCTGCTGCCGACCAACGGTGCAGAATGGTGGAAAATTCGCTCCGAGCTGCAGAAGGGACTTAGCTCACCGCAG-AATGTGCGCAATTTTCTGCCCGCCACGGACAAAATAACGAAGGAGTTCGTTACTCGCCTGCGAGCGCAAATGGAGCCAGGCAAAAGCATCCTAATAGAGGACTTTATGCCGCTGGTCTCGCGGCTGAATCTGGAATTAATCTGCTTGCTTGCCTTCGACGTACGGTTGGACAGCTTCTCGGAGGAACAGATGGACCCGGGCTCACTTTCCTCCCGCCTGATGGAATCGGCCGAAACGACCAACTCCTGCATCCTGGCCCACCGACCAGGGCTTCCAGCTGTGGCGCTACTTTGAAACGCCCGCTTACAGACGG] [+] EMBL AL696745 [CGAGCAGATCGCCAGAGGTGNANACGCTCGGACTGGGCAATCTGTACCAGTACATACCGGGTATAGGGCGTTACAGCTTCGATGAGCTGCACCGTTCCGGCGAGGATAAATACCGCCAGTATGGTTCGATCGTGCGCGAAACAATGGTCCCGGGGCAGGATATTGTGTGGCTTTACGATCCGGACGATGTGGCAACCGTGCTGGACGATCGCACACCGGGCATGTACCCGTCGCGACGGAGCCACACGGCGCTGGAAAAATATCGCAAGGATCGTCCGAACGTTTACCGTACCGCCG GGCTGCTGCCGACCAACGGTGCAGAATGGTGGAAAATTCGCTCCGAGCTGCAGAAGGGACTTAGCTCACCGCAG AATGTGCGCAATTTTCTGCCCGCCACGGACAAAATAACGAAGGAGTTCGTTACTCGCCTGCGAGCGCAAATGGAGCCAGGCAAAAGCATCCTAATAGAGGACTTTATGCCGCTGGTCTCGCGGCTGAATCTGGAATTAATCTGCTTGCTTGCCTTCGACGTACGGTTGGACAGCTTCTCGGAGGAACAGATGGACCCGGGCTCACTTT ] [+] EMBL AL931579 [ agatCGCCGAGGCTTTTTCC AGCAACGGTGCAGAATGGTGGAAAA TCGCTCCGAGCTGCAGAAGGGACTTAGCTCACCGCAGAAATGTGCGCAATTTTCTGCCCGCCACGGACAAAATAACGAAGGAGTTCGTTACTCGCCTGCGAGCGCAAATGGAGCCAGGCAAAAGCATCCTAATAGAGGACTTTATGCCGCTGGTCTCGCGGCTGAATCTGGAATTAATCTGCTTGCTTGCCTTCGACGTACGGTTGGACAGCTTCTCGGAGGAACAGATGGACCCGGGCTCACTTTCCTCCCGCCTGATGGAATCGGCCGAAACGACCAACTCCTGCATCCTGGCCCACCGACCAGGGCTTCCAGCTGTGGCGCTACTTTGAAACGCCCGCTTACAGACGG] consensusID : consensus_5049#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 638 fasta sequence [CAGAATCGCCACGAGGTGNTGATCTCTGTGGTGCGCTCTTACTTTTCTTTCAATATTTTCTTAGTGTCGTGGACAGTTAAAAAGATGCTTTTGACCTTTTAAGTTAGAAACTATTGTTTACATATTGTAAAGAGCAATGAATCTTCCAAGACAAATCACGAAACGTTTGCGTGGCTTTTCATCGGTAGCTAACAAACCTTCGAAAAGGACGGTTAAAAGCTTCGATGAAATACCCGG-CCAAGGGGACCGCTCGGACTGGGCAATCTGTACCAGTACATACCGGGTATAGGGCGTTACAGCTTCGATGAGCTGCACCGTTCCGGCGAGGATAAATACCG-CAGTATGGTTCGATCGTGCGCGAAACAATGGTCCCGGGGCAGGATATTGTGTGGCTTTACGATCCGGACGATGTGGCAACCGTGCTGGACGATCGCACACCGGGCATGTACCCGTCGCGACGGAGCCACACGGCGCTGGAAAAATATCGCAAGGATCGTCCGAACGTTTACCGTACCGCCGGGCTGCTGCCGA-CAACGGTGCACGAATGGTGGAAAATTCGCTCCGAGCTGCAGAAGGGACTTAGCTCACCGCAGAATGTGCGCAATTTTCTGCCCGCCACGGACAAAATAACGAAGGAG] [+] EMBL AL696785 [CAGAATCGCCACGAGGTGNTGATCTCTGTGGTGCGCTCTTACTTTTCTTTCAATATTTTCTTAGTGTCGTGGACAGTTAAAAAGATGCTTTTGACCTTTTAAGTTAGAAACTATTGTTTACATATTGTAAAGAGCAATGAATCTTCCAAGACAAATCACGAAACGTTTGCGTGGCTTTTCATCGGTAGCTAACAAACCTTCGAAAAGGACGGTTAAAAGCTTCGATGAAATACCCGG CCAAGGGGACCGCTCGGACTGGGCAATCTGTACCAGTACATACCGGGTATAGGGCGTTACAGCTTCGATGAGCTGCACCGTTCCGGCGAGGATAAATACCG CAGTATGGTTCGATCGTGCGCGAAACAATGGTCCCGGGGCAGGATATTGTGTGGCTTTACGATCCGGACGATGTGGCAACCGTGCTGGACGATCGCACACCGGGCATGTACCCGTCGCGACGGAGCCACACGGCGCTGGAAAAATATCGCAAGGATCGTCCGAACGTTTACCGTACCGCCGGGCTGCTGCCGA CAACGGTGCACGAATGGTGGAAAATTCGCTCCGAGCTGCAGAAGGGACTTAG ] [+] EMBL AGA284763 [ TCGGTAGCTAACAAACCTTCGCAAAGGACGGTTAAAAGCTTCGATGAAATACCCGGCCCAAGGGGACCGCTCGGACTGGGCAATCTGTACCAGTACATACCGGGTATAGGGCGTTACAGCTTCGATGAGCTGCACCGTTCCGGCGAGGATAAATACCGCCAGTATGGTTCGATCGTGCGCGAAACAATGGTCCCGGGGCAGGATATTGTGTGGCTTTACGATCCGGACGATGTGGCAACCGTGCTGGACGATCGCACACCGGGCATGTACCCGTCGCGACGGAGCCACACGGCGCTGGAAAAATATCGCAAGGATCGTCCGAACGTTTACCGTACCGCCGGGCTGCTGCCGACCAACGGTGCA GAATGGTGGAAAATTCGCTCCGAGCTGCAGAAGGGACTTAGCTCACCGCAGAATGTGCGCAATTTTCTGCCCGCCACGGACAAAATAACGAAGGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5049#0 ------------------------------------------------------------ consensus_5049#1 CAGAATCGCCACGAGGTGNTGATCTCTGTGGTGCGCTCTTACTTTTCTTTCAATATTTTC 60 consensus_5049#0 ------------------------------------------------------------ consensus_5049#1 TTAGTGTCGTGGACAGTTAAAAAGATGCTTTTGACCTTTTAAGTTAGAAACTATTGTTTA 120 consensus_5049#0 ------------------------------------------------------------ consensus_5049#1 CATATTGTAAAGAGCAATGAATCTTCCAAGACAAATCACGAAACGTTTGCGTGGCTTTTC 180 consensus_5049#0 ------------------------------------------CGAGCAGATCGCCAGAGG 18 consensus_5049#1 ATCGGTAGCTAACAAACCTTCGAAAAGGACGGTTAAAAGCTTCGATGAAATACCCGGCCA 240 *** * ** ** * consensus_5049#0 TGNANAC-GCTCGGACTGGGCAATCTGTACCAGTACATACCGGGTATAGGGCGTTACAGC 77 consensus_5049#1 AGGGGACCGCTCGGACTGGGCAATCTGTACCAGTACATACCGGGTATAGGGCGTTACAGC 300 * ** **************************************************** consensus_5049#0 TTCGATGAGCTGCACCGTTCCGGCGAGGATAAATACCGCCAGTATGGTTCGATCGTGCGC 137 consensus_5049#1 TTCGATGAGCTGCACCGTTCCGGCGAGGATAAATACCGC-AGTATGGTTCGATCGTGCGC 359 *************************************** ******************** consensus_5049#0 GAAACAATGGTCCCGGGGCAGGATATTGTGTGGCTTTACGATCCGGACGATGTGGCAACC 197 consensus_5049#1 GAAACAATGGTCCCGGGGCAGGATATTGTGTGGCTTTACGATCCGGACGATGTGGCAACC 419 ************************************************************ consensus_5049#0 GTGCTGGACGATCGCACACCGGGCATGTACCCGTCGCGACGGAGCCACACGGCGCTGGAA 257 consensus_5049#1 GTGCTGGACGATCGCACACCGGGCATGTACCCGTCGCGACGGAGCCACACGGCGCTGGAA 479 ************************************************************ consensus_5049#0 AAATATCGCAAGGATCGTCCGAACGTTTACCGTACCGCCGGGCTGCTGCCGACCAACGGT 317 consensus_5049#1 AAATATCGCAAGGATCGTCCGAACGTTTACCGTACCGCCGGGCTGCTGCCGAC-AACGGT 538 ***************************************************** ****** consensus_5049#0 GCA-GAATGGTGGAAAATTCGCTCCGAGCTGCAGAAGGGACTTAGCTCACCGCAGAATGT 376 consensus_5049#1 GCACGAATGGTGGAAAATTCGCTCCGAGCTGCAGAAGGGACTTAGCTCACCGCAGAATGT 598 *** ******************************************************** consensus_5049#0 GCGCAATTTTCTGCCCGCCACGGACAAAATAACGAAGGAGTTCGTTACTCGCCTGCGAGC 436 consensus_5049#1 GCGCAATTTTCTGCCCGCCACGGACAAAATAACGAAGGAG-------------------- 638 **************************************** consensus_5049#0 GCAAATGGAGCCAGGCAAAAGCATCCTAATAGAGGACTTTATGCCGCTGGTCTCGCGGCT 496 consensus_5049#1 ------------------------------------------------------------ consensus_5049#0 GAATCTGGAATTAATCTGCTTGCTTGCCTTCGACGTACGGTTGGACAGCTTCTCGGAGGA 556 consensus_5049#1 ------------------------------------------------------------ consensus_5049#0 ACAGATGGACCCGGGCTCACTTTCCTCCCGCCTGATGGAATCGGCCGAAACGACCAACTC 616 consensus_5049#1 ------------------------------------------------------------ consensus_5049#0 CTGCATCCTGGCCCACCGACCAGGGCTTCCAGCTGTGGCGCTACTTTGAAACGCCCGCTT 676 consensus_5049#1 ------------------------------------------------------------ consensus_5049#0 ACAGACGG 684 consensus_5049#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||