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Anopheles gambiae
cluster # 5049 cluster # 5049       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5049#0 length = 684 sequences # 2  
consensus_5049#1 length = 638 sequences # 2  

consensusID : consensus_5049#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 684
fasta sequence
                              [CGAGCAGATCGCCAGAGGTGNANACGCTCGGACTGGGCAATCTGTACCAGTACATACCGGGTATAGGGCGTTACAGCTTCGATGAGCTGCACCGTTCCGGCGAGGATAAATACCGCCAGTATGGTTCGATCGTGCGCGAAACAATGGTCCCGGGGCAGGATATTGTGTGGCTTTACGATCCGGACGATGTGGCAACCGTGCTGGACGATCGCACACCGGGCATGTACCCGTCGCGACGGAGCCACACGGCGCTGGAAAAATATCGCAAGGATCGTCCGAACGTTTACCGTACCGCCG-GGCTGCTGCCGACCAACGGTGCAGAATGGTGGAAAATTCGCTCCGAGCTGCAGAAGGGACTTAGCTCACCGCAG-AATGTGCGCAATTTTCTGCCCGCCACGGACAAAATAACGAAGGAGTTCGTTACTCGCCTGCGAGCGCAAATGGAGCCAGGCAAAAGCATCCTAATAGAGGACTTTATGCCGCTGGTCTCGCGGCTGAATCTGGAATTAATCTGCTTGCTTGCCTTCGACGTACGGTTGGACAGCTTCTCGGAGGAACAGATGGACCCGGGCTCACTTTCCTCCCGCCTGATGGAATCGGCCGAAACGACCAACTCCTGCATCCTGGCCCACCGACCAGGGCTTCCAGCTGTGGCGCTACTTTGAAACGCCCGCTTACAGACGG]

[+] EMBL AL696745             [CGAGCAGATCGCCAGAGGTGNANACGCTCGGACTGGGCAATCTGTACCAGTACATACCGGGTATAGGGCGTTACAGCTTCGATGAGCTGCACCGTTCCGGCGAGGATAAATACCGCCAGTATGGTTCGATCGTGCGCGAAACAATGGTCCCGGGGCAGGATATTGTGTGGCTTTACGATCCGGACGATGTGGCAACCGTGCTGGACGATCGCACACCGGGCATGTACCCGTCGCGACGGAGCCACACGGCGCTGGAAAAATATCGCAAGGATCGTCCGAACGTTTACCGTACCGCCG GGCTGCTGCCGACCAACGGTGCAGAATGGTGGAAAATTCGCTCCGAGCTGCAGAAGGGACTTAGCTCACCGCAG AATGTGCGCAATTTTCTGCCCGCCACGGACAAAATAACGAAGGAGTTCGTTACTCGCCTGCGAGCGCAAATGGAGCCAGGCAAAAGCATCCTAATAGAGGACTTTATGCCGCTGGTCTCGCGGCTGAATCTGGAATTAATCTGCTTGCTTGCCTTCGACGTACGGTTGGACAGCTTCTCGGAGGAACAGATGGACCCGGGCTCACTTT                                                                                                         ]
[+] EMBL AL931579             [                                                                                                                                                                                                                                                                                                agatCGCCGAGGCTTTTTCC AGCAACGGTGCAGAATGGTGGAAAA TCGCTCCGAGCTGCAGAAGGGACTTAGCTCACCGCAGAAATGTGCGCAATTTTCTGCCCGCCACGGACAAAATAACGAAGGAGTTCGTTACTCGCCTGCGAGCGCAAATGGAGCCAGGCAAAAGCATCCTAATAGAGGACTTTATGCCGCTGGTCTCGCGGCTGAATCTGGAATTAATCTGCTTGCTTGCCTTCGACGTACGGTTGGACAGCTTCTCGGAGGAACAGATGGACCCGGGCTCACTTTCCTCCCGCCTGATGGAATCGGCCGAAACGACCAACTCCTGCATCCTGGCCCACCGACCAGGGCTTCCAGCTGTGGCGCTACTTTGAAACGCCCGCTTACAGACGG]


>consensus_5049#0 CGAGCAGATCGCCAGAGGTGNANACGCTCGGACTGGGCAATCTGTACCAGTACATACCGG GTATAGGGCGTTACAGCTTCGATGAGCTGCACCGTTCCGGCGAGGATAAATACCGCCAGT ATGGTTCGATCGTGCGCGAAACAATGGTCCCGGGGCAGGATATTGTGTGGCTTTACGATC CGGACGATGTGGCAACCGTGCTGGACGATCGCACACCGGGCATGTACCCGTCGCGACGGA GCCACACGGCGCTGGAAAAATATCGCAAGGATCGTCCGAACGTTTACCGTACCGCCGGGC TGCTGCCGACCAACGGTGCAGAATGGTGGAAAATTCGCTCCGAGCTGCAGAAGGGACTTA GCTCACCGCAGAATGTGCGCAATTTTCTGCCCGCCACGGACAAAATAACGAAGGAGTTCG TTACTCGCCTGCGAGCGCAAATGGAGCCAGGCAAAAGCATCCTAATAGAGGACTTTATGC CGCTGGTCTCGCGGCTGAATCTGGAATTAATCTGCTTGCTTGCCTTCGACGTACGGTTGG ACAGCTTCTCGGAGGAACAGATGGACCCGGGCTCACTTTCCTCCCGCCTGATGGAATCGG CCGAAACGACCAACTCCTGCATCCTGGCCCACCGACCAGGGCTTCCAGCTGTGGCGCTAC TTTGAAACGCCCGCTTACAGACGG



consensusID : consensus_5049#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 638
fasta sequence
                              [CAGAATCGCCACGAGGTGNTGATCTCTGTGGTGCGCTCTTACTTTTCTTTCAATATTTTCTTAGTGTCGTGGACAGTTAAAAAGATGCTTTTGACCTTTTAAGTTAGAAACTATTGTTTACATATTGTAAAGAGCAATGAATCTTCCAAGACAAATCACGAAACGTTTGCGTGGCTTTTCATCGGTAGCTAACAAACCTTCGAAAAGGACGGTTAAAAGCTTCGATGAAATACCCGG-CCAAGGGGACCGCTCGGACTGGGCAATCTGTACCAGTACATACCGGGTATAGGGCGTTACAGCTTCGATGAGCTGCACCGTTCCGGCGAGGATAAATACCG-CAGTATGGTTCGATCGTGCGCGAAACAATGGTCCCGGGGCAGGATATTGTGTGGCTTTACGATCCGGACGATGTGGCAACCGTGCTGGACGATCGCACACCGGGCATGTACCCGTCGCGACGGAGCCACACGGCGCTGGAAAAATATCGCAAGGATCGTCCGAACGTTTACCGTACCGCCGGGCTGCTGCCGA-CAACGGTGCACGAATGGTGGAAAATTCGCTCCGAGCTGCAGAAGGGACTTAGCTCACCGCAGAATGTGCGCAATTTTCTGCCCGCCACGGACAAAATAACGAAGGAG]

[+] EMBL AL696785             [CAGAATCGCCACGAGGTGNTGATCTCTGTGGTGCGCTCTTACTTTTCTTTCAATATTTTCTTAGTGTCGTGGACAGTTAAAAAGATGCTTTTGACCTTTTAAGTTAGAAACTATTGTTTACATATTGTAAAGAGCAATGAATCTTCCAAGACAAATCACGAAACGTTTGCGTGGCTTTTCATCGGTAGCTAACAAACCTTCGAAAAGGACGGTTAAAAGCTTCGATGAAATACCCGG CCAAGGGGACCGCTCGGACTGGGCAATCTGTACCAGTACATACCGGGTATAGGGCGTTACAGCTTCGATGAGCTGCACCGTTCCGGCGAGGATAAATACCG CAGTATGGTTCGATCGTGCGCGAAACAATGGTCCCGGGGCAGGATATTGTGTGGCTTTACGATCCGGACGATGTGGCAACCGTGCTGGACGATCGCACACCGGGCATGTACCCGTCGCGACGGAGCCACACGGCGCTGGAAAAATATCGCAAGGATCGTCCGAACGTTTACCGTACCGCCGGGCTGCTGCCGA CAACGGTGCACGAATGGTGGAAAATTCGCTCCGAGCTGCAGAAGGGACTTAG                                                       ]
[+] EMBL AGA284763            [                                                                                                                                                                                     TCGGTAGCTAACAAACCTTCGCAAAGGACGGTTAAAAGCTTCGATGAAATACCCGGCCCAAGGGGACCGCTCGGACTGGGCAATCTGTACCAGTACATACCGGGTATAGGGCGTTACAGCTTCGATGAGCTGCACCGTTCCGGCGAGGATAAATACCGCCAGTATGGTTCGATCGTGCGCGAAACAATGGTCCCGGGGCAGGATATTGTGTGGCTTTACGATCCGGACGATGTGGCAACCGTGCTGGACGATCGCACACCGGGCATGTACCCGTCGCGACGGAGCCACACGGCGCTGGAAAAATATCGCAAGGATCGTCCGAACGTTTACCGTACCGCCGGGCTGCTGCCGACCAACGGTGCA GAATGGTGGAAAATTCGCTCCGAGCTGCAGAAGGGACTTAGCTCACCGCAGAATGTGCGCAATTTTCTGCCCGCCACGGACAAAATAACGAAGGAG]


>consensus_5049#1 CAGAATCGCCACGAGGTGNTGATCTCTGTGGTGCGCTCTTACTTTTCTTTCAATATTTTC TTAGTGTCGTGGACAGTTAAAAAGATGCTTTTGACCTTTTAAGTTAGAAACTATTGTTTA CATATTGTAAAGAGCAATGAATCTTCCAAGACAAATCACGAAACGTTTGCGTGGCTTTTC ATCGGTAGCTAACAAACCTTCGAAAAGGACGGTTAAAAGCTTCGATGAAATACCCGGCCA AGGGGACCGCTCGGACTGGGCAATCTGTACCAGTACATACCGGGTATAGGGCGTTACAGC TTCGATGAGCTGCACCGTTCCGGCGAGGATAAATACCGCAGTATGGTTCGATCGTGCGCG AAACAATGGTCCCGGGGCAGGATATTGTGTGGCTTTACGATCCGGACGATGTGGCAACCG TGCTGGACGATCGCACACCGGGCATGTACCCGTCGCGACGGAGCCACACGGCGCTGGAAA AATATCGCAAGGATCGTCCGAACGTTTACCGTACCGCCGGGCTGCTGCCGACAACGGTGC ACGAATGGTGGAAAATTCGCTCCGAGCTGCAGAAGGGACTTAGCTCACCGCAGAATGTGC GCAATTTTCTGCCCGCCACGGACAAAATAACGAAGGAG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5049#0      ------------------------------------------------------------
consensus_5049#1      CAGAATCGCCACGAGGTGNTGATCTCTGTGGTGCGCTCTTACTTTTCTTTCAATATTTTC 60
                                                                                  

consensus_5049#0      ------------------------------------------------------------
consensus_5049#1      TTAGTGTCGTGGACAGTTAAAAAGATGCTTTTGACCTTTTAAGTTAGAAACTATTGTTTA 120
                                                                                  

consensus_5049#0      ------------------------------------------------------------
consensus_5049#1      CATATTGTAAAGAGCAATGAATCTTCCAAGACAAATCACGAAACGTTTGCGTGGCTTTTC 180
                                                                                  

consensus_5049#0      ------------------------------------------CGAGCAGATCGCCAGAGG 18
consensus_5049#1      ATCGGTAGCTAACAAACCTTCGAAAAGGACGGTTAAAAGCTTCGATGAAATACCCGGCCA 240
                                                                ***  * **  ** *   

consensus_5049#0      TGNANAC-GCTCGGACTGGGCAATCTGTACCAGTACATACCGGGTATAGGGCGTTACAGC 77
consensus_5049#1      AGGGGACCGCTCGGACTGGGCAATCTGTACCAGTACATACCGGGTATAGGGCGTTACAGC 300
                       *   ** ****************************************************

consensus_5049#0      TTCGATGAGCTGCACCGTTCCGGCGAGGATAAATACCGCCAGTATGGTTCGATCGTGCGC 137
consensus_5049#1      TTCGATGAGCTGCACCGTTCCGGCGAGGATAAATACCGC-AGTATGGTTCGATCGTGCGC 359
                      *************************************** ********************

consensus_5049#0      GAAACAATGGTCCCGGGGCAGGATATTGTGTGGCTTTACGATCCGGACGATGTGGCAACC 197
consensus_5049#1      GAAACAATGGTCCCGGGGCAGGATATTGTGTGGCTTTACGATCCGGACGATGTGGCAACC 419
                      ************************************************************

consensus_5049#0      GTGCTGGACGATCGCACACCGGGCATGTACCCGTCGCGACGGAGCCACACGGCGCTGGAA 257
consensus_5049#1      GTGCTGGACGATCGCACACCGGGCATGTACCCGTCGCGACGGAGCCACACGGCGCTGGAA 479
                      ************************************************************

consensus_5049#0      AAATATCGCAAGGATCGTCCGAACGTTTACCGTACCGCCGGGCTGCTGCCGACCAACGGT 317
consensus_5049#1      AAATATCGCAAGGATCGTCCGAACGTTTACCGTACCGCCGGGCTGCTGCCGAC-AACGGT 538
                      ***************************************************** ******

consensus_5049#0      GCA-GAATGGTGGAAAATTCGCTCCGAGCTGCAGAAGGGACTTAGCTCACCGCAGAATGT 376
consensus_5049#1      GCACGAATGGTGGAAAATTCGCTCCGAGCTGCAGAAGGGACTTAGCTCACCGCAGAATGT 598
                      *** ********************************************************

consensus_5049#0      GCGCAATTTTCTGCCCGCCACGGACAAAATAACGAAGGAGTTCGTTACTCGCCTGCGAGC 436
consensus_5049#1      GCGCAATTTTCTGCCCGCCACGGACAAAATAACGAAGGAG-------------------- 638
                      ****************************************                    

consensus_5049#0      GCAAATGGAGCCAGGCAAAAGCATCCTAATAGAGGACTTTATGCCGCTGGTCTCGCGGCT 496
consensus_5049#1      ------------------------------------------------------------
                                                                                  

consensus_5049#0      GAATCTGGAATTAATCTGCTTGCTTGCCTTCGACGTACGGTTGGACAGCTTCTCGGAGGA 556
consensus_5049#1      ------------------------------------------------------------
                                                                                  

consensus_5049#0      ACAGATGGACCCGGGCTCACTTTCCTCCCGCCTGATGGAATCGGCCGAAACGACCAACTC 616
consensus_5049#1      ------------------------------------------------------------
                                                                                  

consensus_5049#0      CTGCATCCTGGCCCACCGACCAGGGCTTCCAGCTGTGGCGCTACTTTGAAACGCCCGCTT 676
consensus_5049#1      ------------------------------------------------------------
                                                                                  

consensus_5049#0      ACAGACGG 684
consensus_5049#1      --------
                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)