These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5053#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 680 fasta sequence [TTTAACGCGACGGGATTTTGTGTTACTAATTGGGTTCCGCGTAAAATTGGTGCGTAAAAAGGTGTGTGCGTGCAAAATAGCACCGTAAAGTTAAAAGAACAAAAAAAAAAACGTGTACAAATAAAAACAAAGAATAAGAAATAGAATTCCGCAAAGAAAAATTGCAAAATATTATACATATACATTGTAATGGAATGAAACCAGTAAATCACTGCCATTTTGTACCAGGGACACACACATCCACGCACGGCGCGAACTAATTTGCCTTGCCTCTGGCTGCTGACCGGGGCTGCTTTTTTTGGTCCAAAGTGGTGAGCATTAGTTTTCCCGTGCCGC--GTGTGTGTGTGAGTGTNATGGGCAAAGAGTAATCAAACGTGGGTGGGTNTAAGCGAATAGAGAAAGGA-ATAAGA--GCGACGCNGTAGGTAAAGAAAATGGGTATGTTGTGTACAGGAAACCCGATCTAAGGTACAGGATCAGAGGACAGAGATTAGATNCACAAATTTTATTAATTAACGAAGGAAAGGATCGTGTGTGAGTGTANGAGAATGAATGAATGAGCGCAGAAATGGTTGCAAAAGGAGTAAGAATGAATGTTGCCGAATGATAGGATGAGTGTAAGATTATTGAATGTCATTTAATATCGAAGAGAATGAATGTGTCACAGGGAAAGCATTAGGATA] [+] EMBL BX619981 [TTTAACGCGACGGGATTTTGTGTTACTAATTGGGTTCCGCGTAAAATTGGTGCGTAAAAAGGTGTGTGCGTGCAAAATAGCACCGTAAAGTTAAAAGAACAAAAAAAAAAACGTGTACAAATAAAAACAAAGAATAAGAAATAGAATTCCGCAAAGAAAAATTGCAAAATATTATACATATACATTGTAATGGAATGAAACCAGTAAATCACTGCCATTTTGTACCAGGGACACACACATCCACGCACGGCGCGAACTAATTTGCCTTGCCTCTGGCTGCTGACCGGGGCTGCTTTTTTTGGTCCAAAGTGGTGAGCATNAGTTTTCCCGTGCCGC GTGTGTGTGTGAGTGTNATGGGCAAAGAGTAATCAAACGTGGGTGGGTNTAAGCGAATAGAGAAAGGA ATAAGA GCGACGCNGTAGGTAAAGAAAATGGGTATGTTGTGTACAGGAAACCCGATCTAAGGTACAGGATCAGAGGACAGAGATTAGATNCACAAATTTTATTAATTAACGAAGGAAAGGATCGTGTGTGAGTGTANGAGAATGAATGAATGA ] [+] EMBL BX624300 [ TTAACGCGACGGGATTTTGTGTTACTAATTGGGTTCCGCGTAAAATTGGTGCGTAAAAAGGTGTGTGCGTGCAAAATAGCACCGTAAAGTTAAAAGAACAAAAAAAAAAACGTGTACAAATAAAAACAAAGAATAAGAAATAAAATTCCGCAAAGAAAAATTGCAAAATATTATACATATACATTGTAATGGAATGAAACCAGTAAATCACTGCCATTTTGTACCAGGGACACACACATCCACGCACGGCGCGAACTAATTTGCCTTGCCTCTGGCTGCTGACCGGGGCTGCTTTTTTTGGTCCAAAGTGGTGAGCATTAGTNTCCCCGTGCCGC GTGTGTGTGTGAGTGTAATGGGCAAAGAGTATTC AACGTGGGTGGGTTTAAGCGAATA AGAAAGGANNTAAAA G ] [+] EMBL AGA284949 [ ACTAATTTGCCTTGCCTCTGGCTGCTGACCGGGGCTGCTTTTTTTGGTCCAAAGTGGTGAGCATTAGTTTTCCCGTGCCGCGTGTGTGTGTGTGTGTGTTATGGGCAAAGAGTAATCAAACGT T TAAGGGAATAGAGAAAGGA ATAAGAGCGCGACGCCGTAGGTAAAGAAAATGGGTATGTTGTGTACAGGAAACCCGATCTAAGGTACAGGATCAGAGGACAGAGATTAGATTCAC AATTTTATTAATTAACGAAGGAAAGGATCGTGTGTGAGTGTAAGAGAATGAATGAATGAGCGCAGAAATGGTTGCAAAAGGAGTAAGAATGAATGTTGCCGAATGATAGGATGAGTGTAAGATTATTGAATGTCATTTAATATCGAAGAGAATGAATGTGTCACAGGGAAAGCATTAGGATA] consensusID : consensus_5053#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 495 fasta sequence [CAGAATCGTCACGAGGGTGNATCGGTNNTAAACTTCTTGTGGGTACATATTTGCACGCACACACCGTTTCTACGGCACCAATTTTACGCGGAACCCAATTAGGTAACAGCAAAATCCCGTCGCGTTAAAATTGCAGGAACATTTTGCTTTGGCAAACAGAGTATAGATCCTTTTCCTTTTTCCTTTTTGGGGCCTTTNATATTCTGAACAATATAAGGCAAAACCCCCGAACGATTCCCCATTCATTTCTGTTGCTGTATTCCCATTTCCTATATTCACTTTCTATGCCGTTCTTGCATTAGTAGTATAANGTAAAACCCACACATTCCAAGGGAATAATTNTGAATTTCGTNCTGTCNGACTGAATACGCAAANGGGANACAATTGGGNNAGCGCTCATGCGTTGTATGGTATCGCGGGGTATCCACTGGCACGGCACATNAGGAGTGGGTCTCCTTGGGAGNGGNTGNCCAGGCAANATGNGCCGACACATTT] [+] EMBL BX469236 [CAGAATCGTCACGAGGGTGNATCGGTNNTAAACTTCTTGTGGGTACATATTTGCACGCACACACCGTTTCTACGGCACCAATTTTACGCGGAACCCAATTAGGTAACAGCAAAATCCCGTCGCGTTAAAATTGCAGGAACATTTTGCTTTGGCAAACAGAGTATAGATCCTTTTCCTTTTTCCTTTTTGGGGCCTTTNATATTCTGAACAATATAAGGCAAAACCCCCGAACGATTCCCCATTCATTTCTGTTGCTGTATTCCCATTTCCTATATTCACTTTCTATGCCGTTCTTGCATTAGTAGTATAANGTAAAACCCACACATTCCAAGGGAATAATTNTGAATTTCGTNCTGTCNGACTGAATACGCAAANGGGANACAATTGGGNNAGCGCTCATGCGTTGTATGGTATCGCGGGGTATCCACTGGCACGGCACATNAGGAGTGGGTCTCCTTGGGAGNGGNTGNCCAGGCAANATGNGCCGACACATTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5053#0 TTTAACGCGACGGGATTTTGTGTTACTAATTGGGTTCCGCGTAAAATTGGTGCGTAAAAA 60 consensus_5053#1 ----------CAGAATC----GTCACGAGGGTGNATCGGTNNTAAACTTCT-TGTGGGTA 45 * * ** ** ** * * ** * *** * * ** * consensus_5053#0 GGTGTGTGCGTGCAAAATAGCACCGTAAAGTTAAAAGAACAAAAAAAAAAACGTGTACAA 120 consensus_5053#1 CATATTTGCACGCACA----CACCGTT---TCTACGGCACCAAT---------TTTACGC 89 * * *** *** * ****** * * * ** ** * *** consensus_5053#0 ATAAAAACAAAGAATAAGAAATAGAATTCCGCAAAGA-AAAATTGCAA-AATATTATACA 178 consensus_5053#1 G-GAACCCAATTAGGTAACAGCAAAATCCCGTCGCGTTAAAATTGCAGGAACATTTTGCT 148 ** *** * * * * *** *** * ********* ** *** * * consensus_5053#0 TATACATTGTAATGGAATGAAACCAGTAAATCACTGCCATTTTGTACCAGGGACACACAC 238 consensus_5053#1 TTGGCA--AACAGAGTATAGATCCTTTTCCTTTTTCCTTTTTGGGGCCTTTNATATTCTG 206 * ** * * ** * ** * * * * *** * ** * * * consensus_5053#0 ATCCACGCACGGCGCGAACTAATTTGCCTTGCCTCTGGCTGCTGACCGGGGCTGCTTTTT 298 consensus_5053#1 AACAATATAAGGCAAAACC---CCCGAACGATTCCCCATTCATTTCTGTTGCTGTATTCC 263 * * * * *** * * * * * * * * **** ** consensus_5053#0 TTGGTCCAAAGTGGTGAGCATTAGTTTTCCCGTGCCGCGTGTGTGTGTGAGTGTNATGGG 358 consensus_5053#1 CATTTCCTA---------TATTCACTTTCT-ATGCCG--TTCTTGCATTAGTAGTATA-- 309 *** * *** **** ***** * ** * *** ** consensus_5053#0 CAAAGAGTAATCAAACGTGGGTGGGTNTAAGCGAATAGAGAAAGGAATAAGAGCGACGCN 418 consensus_5053#1 -ANGTAAAACCCACACAT-------TCCAAGGGAATAATTNTGAATTTCGTNCTGTCNGA 361 * * * ** ** * * *** ***** * * * consensus_5053#0 GTAGGTAAAGAAAATGGGTATGTTGTGTACAGGAAACCCGATCTAAGGTACAGGATCAGA 478 consensus_5053#1 CTGAATACGCAAANGGGANACAAT---TGGGNNAGCGCTCATGCGTTGTATGGTATCGCG 418 * ** *** ** * * * * * ** *** * *** consensus_5053#0 GGACAGAGATTAGATNCACAAATTTTATTAATTAACGAAGGAAAGGATCGTGTGTGAGTG 538 consensus_5053#1 GGGTATCCACTGGCACGGCACATN--------------AGGAGTGGGTC-TCCTTGGGAG 463 ** * * * * ** ** **** ** ** * ** * * consensus_5053#0 TANGAGAATGAATGAATGAGCGCAGAAATGGTTGCAAAAGGAGTAAGAATGAATGTTGCC 598 consensus_5053#1 NGGNTGNCCAGGC-AANATGNGCCGACACATTT--------------------------- 495 * ** * ** ** * ** consensus_5053#0 GAATGATAGGATGAGTGTAAGATTATTGAATGTCATTTAATATCGAAGAGAATGAATGTG 658 consensus_5053#1 ------------------------------------------------------------ consensus_5053#0 TCACAGGGAAAGCATTAGGATA 680 consensus_5053#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||