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Anopheles gambiae
cluster # 5053 cluster # 5053       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5053#0 length = 680 sequences # 3  
consensus_5053#1 length = 495 sequences # 1  

consensusID : consensus_5053#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 680
fasta sequence
                              [TTTAACGCGACGGGATTTTGTGTTACTAATTGGGTTCCGCGTAAAATTGGTGCGTAAAAAGGTGTGTGCGTGCAAAATAGCACCGTAAAGTTAAAAGAACAAAAAAAAAAACGTGTACAAATAAAAACAAAGAATAAGAAATAGAATTCCGCAAAGAAAAATTGCAAAATATTATACATATACATTGTAATGGAATGAAACCAGTAAATCACTGCCATTTTGTACCAGGGACACACACATCCACGCACGGCGCGAACTAATTTGCCTTGCCTCTGGCTGCTGACCGGGGCTGCTTTTTTTGGTCCAAAGTGGTGAGCATTAGTTTTCCCGTGCCGC--GTGTGTGTGTGAGTGTNATGGGCAAAGAGTAATCAAACGTGGGTGGGTNTAAGCGAATAGAGAAAGGA-ATAAGA--GCGACGCNGTAGGTAAAGAAAATGGGTATGTTGTGTACAGGAAACCCGATCTAAGGTACAGGATCAGAGGACAGAGATTAGATNCACAAATTTTATTAATTAACGAAGGAAAGGATCGTGTGTGAGTGTANGAGAATGAATGAATGAGCGCAGAAATGGTTGCAAAAGGAGTAAGAATGAATGTTGCCGAATGATAGGATGAGTGTAAGATTATTGAATGTCATTTAATATCGAAGAGAATGAATGTGTCACAGGGAAAGCATTAGGATA]

[+] EMBL BX619981             [TTTAACGCGACGGGATTTTGTGTTACTAATTGGGTTCCGCGTAAAATTGGTGCGTAAAAAGGTGTGTGCGTGCAAAATAGCACCGTAAAGTTAAAAGAACAAAAAAAAAAACGTGTACAAATAAAAACAAAGAATAAGAAATAGAATTCCGCAAAGAAAAATTGCAAAATATTATACATATACATTGTAATGGAATGAAACCAGTAAATCACTGCCATTTTGTACCAGGGACACACACATCCACGCACGGCGCGAACTAATTTGCCTTGCCTCTGGCTGCTGACCGGGGCTGCTTTTTTTGGTCCAAAGTGGTGAGCATNAGTTTTCCCGTGCCGC  GTGTGTGTGTGAGTGTNATGGGCAAAGAGTAATCAAACGTGGGTGGGTNTAAGCGAATAGAGAAAGGA ATAAGA  GCGACGCNGTAGGTAAAGAAAATGGGTATGTTGTGTACAGGAAACCCGATCTAAGGTACAGGATCAGAGGACAGAGATTAGATNCACAAATTTTATTAATTAACGAAGGAAAGGATCGTGTGTGAGTGTANGAGAATGAATGAATGA                                                                                                                           ]
[+] EMBL BX624300             [ TTAACGCGACGGGATTTTGTGTTACTAATTGGGTTCCGCGTAAAATTGGTGCGTAAAAAGGTGTGTGCGTGCAAAATAGCACCGTAAAGTTAAAAGAACAAAAAAAAAAACGTGTACAAATAAAAACAAAGAATAAGAAATAAAATTCCGCAAAGAAAAATTGCAAAATATTATACATATACATTGTAATGGAATGAAACCAGTAAATCACTGCCATTTTGTACCAGGGACACACACATCCACGCACGGCGCGAACTAATTTGCCTTGCCTCTGGCTGCTGACCGGGGCTGCTTTTTTTGGTCCAAAGTGGTGAGCATTAGTNTCCCCGTGCCGC  GTGTGTGTGTGAGTGTAATGGGCAAAGAGTATTC AACGTGGGTGGGTTTAAGCGAATA AGAAAGGANNTAAAA  G                                                                                                                                                                                                                                                                             ]
[+] EMBL AGA284949            [                                                                                                                                                                                                                                                               ACTAATTTGCCTTGCCTCTGGCTGCTGACCGGGGCTGCTTTTTTTGGTCCAAAGTGGTGAGCATTAGTTTTCCCGTGCCGCGTGTGTGTGTGTGTGTGTTATGGGCAAAGAGTAATCAAACGT       T TAAGGGAATAGAGAAAGGA ATAAGAGCGCGACGCCGTAGGTAAAGAAAATGGGTATGTTGTGTACAGGAAACCCGATCTAAGGTACAGGATCAGAGGACAGAGATTAGATTCAC AATTTTATTAATTAACGAAGGAAAGGATCGTGTGTGAGTGTAAGAGAATGAATGAATGAGCGCAGAAATGGTTGCAAAAGGAGTAAGAATGAATGTTGCCGAATGATAGGATGAGTGTAAGATTATTGAATGTCATTTAATATCGAAGAGAATGAATGTGTCACAGGGAAAGCATTAGGATA]


>consensus_5053#0 TTTAACGCGACGGGATTTTGTGTTACTAATTGGGTTCCGCGTAAAATTGGTGCGTAAAAA GGTGTGTGCGTGCAAAATAGCACCGTAAAGTTAAAAGAACAAAAAAAAAAACGTGTACAA ATAAAAACAAAGAATAAGAAATAGAATTCCGCAAAGAAAAATTGCAAAATATTATACATA TACATTGTAATGGAATGAAACCAGTAAATCACTGCCATTTTGTACCAGGGACACACACAT CCACGCACGGCGCGAACTAATTTGCCTTGCCTCTGGCTGCTGACCGGGGCTGCTTTTTTT GGTCCAAAGTGGTGAGCATTAGTTTTCCCGTGCCGCGTGTGTGTGTGAGTGTNATGGGCA AAGAGTAATCAAACGTGGGTGGGTNTAAGCGAATAGAGAAAGGAATAAGAGCGACGCNGT AGGTAAAGAAAATGGGTATGTTGTGTACAGGAAACCCGATCTAAGGTACAGGATCAGAGG ACAGAGATTAGATNCACAAATTTTATTAATTAACGAAGGAAAGGATCGTGTGTGAGTGTA NGAGAATGAATGAATGAGCGCAGAAATGGTTGCAAAAGGAGTAAGAATGAATGTTGCCGA ATGATAGGATGAGTGTAAGATTATTGAATGTCATTTAATATCGAAGAGAATGAATGTGTC ACAGGGAAAGCATTAGGATA



consensusID : consensus_5053#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 495
fasta sequence
                              [CAGAATCGTCACGAGGGTGNATCGGTNNTAAACTTCTTGTGGGTACATATTTGCACGCACACACCGTTTCTACGGCACCAATTTTACGCGGAACCCAATTAGGTAACAGCAAAATCCCGTCGCGTTAAAATTGCAGGAACATTTTGCTTTGGCAAACAGAGTATAGATCCTTTTCCTTTTTCCTTTTTGGGGCCTTTNATATTCTGAACAATATAAGGCAAAACCCCCGAACGATTCCCCATTCATTTCTGTTGCTGTATTCCCATTTCCTATATTCACTTTCTATGCCGTTCTTGCATTAGTAGTATAANGTAAAACCCACACATTCCAAGGGAATAATTNTGAATTTCGTNCTGTCNGACTGAATACGCAAANGGGANACAATTGGGNNAGCGCTCATGCGTTGTATGGTATCGCGGGGTATCCACTGGCACGGCACATNAGGAGTGGGTCTCCTTGGGAGNGGNTGNCCAGGCAANATGNGCCGACACATTT]

[+] EMBL BX469236             [CAGAATCGTCACGAGGGTGNATCGGTNNTAAACTTCTTGTGGGTACATATTTGCACGCACACACCGTTTCTACGGCACCAATTTTACGCGGAACCCAATTAGGTAACAGCAAAATCCCGTCGCGTTAAAATTGCAGGAACATTTTGCTTTGGCAAACAGAGTATAGATCCTTTTCCTTTTTCCTTTTTGGGGCCTTTNATATTCTGAACAATATAAGGCAAAACCCCCGAACGATTCCCCATTCATTTCTGTTGCTGTATTCCCATTTCCTATATTCACTTTCTATGCCGTTCTTGCATTAGTAGTATAANGTAAAACCCACACATTCCAAGGGAATAATTNTGAATTTCGTNCTGTCNGACTGAATACGCAAANGGGANACAATTGGGNNAGCGCTCATGCGTTGTATGGTATCGCGGGGTATCCACTGGCACGGCACATNAGGAGTGGGTCTCCTTGGGAGNGGNTGNCCAGGCAANATGNGCCGACACATTT]


>consensus_5053#1 CAGAATCGTCACGAGGGTGNATCGGTNNTAAACTTCTTGTGGGTACATATTTGCACGCAC ACACCGTTTCTACGGCACCAATTTTACGCGGAACCCAATTAGGTAACAGCAAAATCCCGT CGCGTTAAAATTGCAGGAACATTTTGCTTTGGCAAACAGAGTATAGATCCTTTTCCTTTT TCCTTTTTGGGGCCTTTNATATTCTGAACAATATAAGGCAAAACCCCCGAACGATTCCCC ATTCATTTCTGTTGCTGTATTCCCATTTCCTATATTCACTTTCTATGCCGTTCTTGCATT AGTAGTATAANGTAAAACCCACACATTCCAAGGGAATAATTNTGAATTTCGTNCTGTCNG ACTGAATACGCAAANGGGANACAATTGGGNNAGCGCTCATGCGTTGTATGGTATCGCGGG GTATCCACTGGCACGGCACATNAGGAGTGGGTCTCCTTGGGAGNGGNTGNCCAGGCAANA TGNGCCGACACATTT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5053#0      TTTAACGCGACGGGATTTTGTGTTACTAATTGGGTTCCGCGTAAAATTGGTGCGTAAAAA 60
consensus_5053#1      ----------CAGAATC----GTCACGAGGGTGNATCGGTNNTAAACTTCT-TGTGGGTA 45
                                * * **     ** ** *    *  ** *    *** *  *  **    *

consensus_5053#0      GGTGTGTGCGTGCAAAATAGCACCGTAAAGTTAAAAGAACAAAAAAAAAAACGTGTACAA 120
consensus_5053#1      CATATTTGCACGCACA----CACCGTT---TCTACGGCACCAAT---------TTTACGC 89
                        * * ***  *** *    ******    *  *  * ** **          * ***  

consensus_5053#0      ATAAAAACAAAGAATAAGAAATAGAATTCCGCAAAGA-AAAATTGCAA-AATATTATACA 178
consensus_5053#1      G-GAACCCAATTAGGTAACAGCAAAATCCCGTCGCGTTAAAATTGCAGGAACATTTTGCT 148
                         **  ***  *   *  *  * *** ***    *  *********  ** *** * * 

consensus_5053#0      TATACATTGTAATGGAATGAAACCAGTAAATCACTGCCATTTTGTACCAGGGACACACAC 238
consensus_5053#1      TTGGCA--AACAGAGTATAGATCCTTTTCCTTTTTCCTTTTTGGGGCCTTTNATATTCTG 206
                      *   **     *  * **  * **  *   *   * *  *** *  **    * *  *  

consensus_5053#0      ATCCACGCACGGCGCGAACTAATTTGCCTTGCCTCTGGCTGCTGACCGGGGCTGCTTTTT 298
consensus_5053#1      AACAATATAAGGCAAAACC---CCCGAACGATTCCCCATTCATTTCTGTTGCTGTATTCC 263
                      * * *   * ***   * *      *        *    *  *  * *  ****  **  

consensus_5053#0      TTGGTCCAAAGTGGTGAGCATTAGTTTTCCCGTGCCGCGTGTGTGTGTGAGTGTNATGGG 358
consensus_5053#1      CATTTCCTA---------TATTCACTTTCT-ATGCCG--TTCTTGCATTAGTAGTATA-- 309
                          *** *          ***   ****   *****  *   **  * ***   **   

consensus_5053#0      CAAAGAGTAATCAAACGTGGGTGGGTNTAAGCGAATAGAGAAAGGAATAAGAGCGACGCN 418
consensus_5053#1      -ANGTAAAACCCACACAT-------TCCAAGGGAATAATTNTGAATTTCGTNCTGTCNGA 361
                       *   *  *  ** ** *       *  *** *****          *      * *   

consensus_5053#0      GTAGGTAAAGAAAATGGGTATGTTGTGTACAGGAAACCCGATCTAAGGTACAGGATCAGA 478
consensus_5053#1      CTGAATACGCAAANGGGANACAAT---TGGGNNAGCGCTCATGCGTTGTATGGTATCGCG 418
                       *   **   ***  **  *   *   *     *   *  **     ***  * ***   

consensus_5053#0      GGACAGAGATTAGATNCACAAATTTTATTAATTAACGAAGGAAAGGATCGTGTGTGAGTG 538
consensus_5053#1      GGGTATCCACTGGCACGGCACATN--------------AGGAGTGGGTC-TCCTTGGGAG 463
                      **  *   * * *     ** **               ****  ** ** *   ** * *

consensus_5053#0      TANGAGAATGAATGAATGAGCGCAGAAATGGTTGCAAAAGGAGTAAGAATGAATGTTGCC 598
consensus_5053#1      NGGNTGNCCAGGC-AANATGNGCCGACACATTT--------------------------- 495
                           *        **   * ** ** *   **                           

consensus_5053#0      GAATGATAGGATGAGTGTAAGATTATTGAATGTCATTTAATATCGAAGAGAATGAATGTG 658
consensus_5053#1      ------------------------------------------------------------
                                                                                  

consensus_5053#0      TCACAGGGAAAGCATTAGGATA 680
consensus_5053#1      ----------------------
                                            




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)