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Anopheles gambiae
cluster # 5054 cluster # 5054       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5054#0 length = 911 sequences # 2  
consensus_5054#1 length = 781 sequences # 2  

consensusID : consensus_5054#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 911
fasta sequence
                              [CCGCCCACGCGTCCGCCCACGCGTCCGGCCTCCGAAGCGAGCGTACCTCGCTCTCCCGTCTGTGAAGATCAAGCCGAGTCGTATTCATTCATAAGTTATAAAGACGACCGGGAAGATTGCTGCGCTGCTACTGGAAGTACAAGAACGCCGCGGCCTATCAAAGCGATCAGAAGAAGGCAAAAAACAGACGCAGAATTATCTCGCCCCCGGAACGTTCTGGTCTGGTGGGAAGCATTGGAGCGCAGCCAGTGCCAAAAATATAGAGGGTCTATTTGGTCGTGAAAAAGCCTACCGGCAGAGCGATAAGAAGAGGAGCAGAGGAGTTTTTCCCCACTGCTGGAGGACAAGCAAAATACGTCAGCAGGAACAATCTAGAGCACACCAGGAGTCAACGATGGGTCTGAAGTTCCTGCTATTTAATAGTCAACAGAGTCAAAATCTCCATGGACGTGGTAGAAAAATCATGGAGGGTTCGGGCGACGGTTCCCCGCAATCGTCGATGTGGCATGGTGAAGGCGGCTGAGCTCTTCCCGAAGCCGATCCTCGAGAAGGAGGAAGAAAAGCTCACCGTACGATTTACCGAGCTTGCCGGTGGAATCCGTACCGTTATCTCGGTCAGACAGATGAAGGCATACTGGCACTGTCCAACTATCGGCTGTTCCTGCAGAAGAACACCACCGGTGCCGAAGTGTCCGTCCCGCTTGGCCTGATCGAATCGACGCAAGTGCGTGACCTGTTCCATCTGATCGTGAACTGCAAAGATGCTAGCACCGTACGATGTTCGTTTGCCACGTCGGAGCAGTGCAGCGAATGGCACCGGCGGATAACGCTATCGATCGGTGTGCCCGAAACGCTGGAGGCACTGTTTGCGTTCCCGTTTCACGCGTGGGCCTCCGAGTCGCCCACGCTCA]

[+] EMBL BM607297             [CCGCCCACGCGTCCGCCCACGCGTCCGGCCTCCGAAGCGAGCGTACCTCGCTCTCCCGTCTGTGAAGATCAAGCCGAGTCGTATTCATTCATAAGTTATAAAGACGACCGGGAAGATTGCTGCGCTGCTACTGGAAGTACAAGAACGCCGCGGCCTATCAAAGCGATCAGAAGAAGGCAAAAAACAGACGCAGAATTATCTCGCCCCCGGAACGTTCTGGTCTGGTGGGAAGCATTGGAGCGCAGCCAGTGCCAAAAATATAGAGGGTCTATTTGGTCGTGAAAAAGCCTACCGGCAGAGCGATAAGAAGAGGAGCAGAGGAGTTTTTCCCCACTGCTGGAGGACAAGCAAAATACGTCAGCAGGAACAATCTAGAGCACACCAGGAGTCAACGATGGGTCTGAAGTTCCTGCTATTTAATAGTCAACAGAGTCAAAATCTCCATGGACGTGGTAGAAAAATCATGGAGGGTTCGGGCGACGGTTCCCCGCAATCGTCGATGTGGCATGGTGAAGGCGGCTGAGCTCTTCCCGAAGCCGATCCTCGAGAAGGAGGAAGAAAAGCTCACCGTACGATTTACCGAGCTTGCCGGTGGAATCCGTACCGTTATCTCGGTCAGACAGATGAA                                                                                                                                                                                                                                                                                           ]
[+] EMBL AGA284973            [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AATCGTCGATGT GCATGGTGAAGGCGGCTGAGCTCTTCCCGAAGCCGATCCTCGAGAAGGAGGAAGAAAAGCTCACCGTACGATTTACCGAGCTTGCCGGT GAATCCGTA CGCTATCTCGGTCAGACAGATGAAGGCATACTGGCACTGTCCAACTATCGGCTGTTCCTGCAGAAGAACACCACCGGTGCCGAAGTGTCCGTCCCGCTTGGCCTGATCGAATCGACGCAAGTGCGTGACCTGTTCCATCTGATCGTGAACTGCAAAGATGCTAGCACCGTACGATGTTCGTTTGCCACGTCGGAGCAGTGCAGCGAATGGCACCGGCGGATAACGCTATCGATCGGTGTGCCCGAAACGCTGGAGGCACTGTTTGCGTTCCCGTTTCACGCGTGGGCCTCCGAGTCGCCCACGCTCA]


>consensus_5054#0 CCGCCCACGCGTCCGCCCACGCGTCCGGCCTCCGAAGCGAGCGTACCTCGCTCTCCCGTC TGTGAAGATCAAGCCGAGTCGTATTCATTCATAAGTTATAAAGACGACCGGGAAGATTGC TGCGCTGCTACTGGAAGTACAAGAACGCCGCGGCCTATCAAAGCGATCAGAAGAAGGCAA AAAACAGACGCAGAATTATCTCGCCCCCGGAACGTTCTGGTCTGGTGGGAAGCATTGGAG CGCAGCCAGTGCCAAAAATATAGAGGGTCTATTTGGTCGTGAAAAAGCCTACCGGCAGAG CGATAAGAAGAGGAGCAGAGGAGTTTTTCCCCACTGCTGGAGGACAAGCAAAATACGTCA GCAGGAACAATCTAGAGCACACCAGGAGTCAACGATGGGTCTGAAGTTCCTGCTATTTAA TAGTCAACAGAGTCAAAATCTCCATGGACGTGGTAGAAAAATCATGGAGGGTTCGGGCGA CGGTTCCCCGCAATCGTCGATGTGGCATGGTGAAGGCGGCTGAGCTCTTCCCGAAGCCGA TCCTCGAGAAGGAGGAAGAAAAGCTCACCGTACGATTTACCGAGCTTGCCGGTGGAATCC GTACCGTTATCTCGGTCAGACAGATGAAGGCATACTGGCACTGTCCAACTATCGGCTGTT CCTGCAGAAGAACACCACCGGTGCCGAAGTGTCCGTCCCGCTTGGCCTGATCGAATCGAC GCAAGTGCGTGACCTGTTCCATCTGATCGTGAACTGCAAAGATGCTAGCACCGTACGATG TTCGTTTGCCACGTCGGAGCAGTGCAGCGAATGGCACCGGCGGATAACGCTATCGATCGG TGTGCCCGAAACGCTGGAGGCACTGTTTGCGTTCCCGTTTCACGCGTGGGCCTCCGAGTC GCCCACGCTCA



consensusID : consensus_5054#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 781
fasta sequence
                              [CCGCCCACGCGTCCGGGAGGAAGAAAAGCTCACCGTACGATTTACCGAGCTTGCCGGTGAATCCGTACGTTATCTCGGTCAGACAGATGAAGGCATACTGGCACTGTCCAACTATCGGCTGTTCCTGCAGAAGAACACCACCGGTGCCGAAGTGTCCGTCCCGCTTGGCCTGATCGAATCGACGCAAGTGCGTGACCTGTTCCATCTGATCGTGAACTGCAAAGATGCCAGCACCGTACGATGTTCGTTTGCCACGTCGGAGCAGTGCAGCGAATGGCACCGGCGGATAACGCTATCGATCGGTGTGCCCGAAACGCTGGAGGCCCTGTTTGCGTTTCCGTTTCACGCGTGGGCCTCCGAGTCGCCCACGCTCAACCAGGACAACGAATGGGCCGGCCGTCTGCAGCGCGTCGGCTCGTTCGACGACGAGTTCCGGCGGGAGGCCGAACGGTTACAGTTCGATCTGCAGGGTGCGTGGCGCATCAGCCAGGCGAATGCGGAGTTTAAGCTGTGCCCATCGTACCCGCGGCTGCTGCTGGTGCCGGCCTGCATCTCGGACGATACGCTGCAGAATGTGGCCAGCTTTCGCAGCTCGCGGCGCATACCGGCGGTCGTGTGGCGCCATCAGCGTACCGGCGCGGTCATCGCGCGCTGCAGTCAGCCCGAGGTCGGGTGGCTCGGGTGGCGCAACTCGAAGGATGAGCAGCTGCTGAAGGCGCTGTCCGATGCGTGCTCGTTCGATCGGGGCACGCAGGATAAGGCCGGCGATGGTACGAGACGG]

[+] EMBL BM644894             [CCGCCCACGCGTCCGGGAGGAAGAAAAGCTCACCGTACGATTTACCGAGCTTGCCGGTGAATCCGTACGTTATCTCGGTCAGACAGATGAAGGCATACTGGCACTGTCCAACTATCGGCTGTTCCTGCAGAAGAACACCACCGGTGCCGAAGTGTCCGTCCCGCTTGGCCTGATCGAATCGACGCAAGTGCGTGACCTGTTCCATCTGATCGTGAACTGCAAAGATGCCAGCACCGTACGATGTTCGTTTGCCACGTCGGAGCAGTGCAGCGAATGGCACCGGCGGATAACGCTATCGATCGGTGTGCCCGAAACGCTGGAGGCCCTGTTTGCGTTTCCGTTTCACGCGTGGGCCTCCGAGTCGCCCACGCTCAACCAGGACAACGAATGGGCCGGCCGTCTGCAGCGCGTCGGCTCGTTCGACGACGAGTTCCGGCGGGAGGCCGAACGGTTACAGTTCGATCTGCAGGGTGCGTGGCGCATCAGCCAGGCGAATGCGGAGTTTAAGCTGTGCCCATCGTACCCGCGGCTGCTGCTGGTGCCGGCCTGCATCTCGGACGATACGCTGCAGAATGTGGCCAGCTTTCGCAGCTCGCGGCGCATACCGGCGGTCGTGTGGCGCCATCAGCGTACCGGCGCGGTCATCGCGCGCTGCAGTCAGCCCGAGGTCGGGTGGCTCGGGT                                                                                                  ]
[+] EMBL BM630346             [                                                                                                      ccgGTCCAACTATCGGCTGTTCCTGCAGAAGAACACCACCGGTGCCGAAGTGTCCGTCCCGCTTGGCCTGATCGAATCGACGCAAGTGCGTGACCTGTTCCATCTGATCGTGAACTGCAAAGATGCTAGCACCGTACGATGTTCGTTTGCCACGTCGGAGCAGTGCAGCGAATGGCACCGGCGGATAACGCTATCGATCGGTGTGCCCGAAACGCTGGAGGCACTGTTTGCGTTCCCGTTTCACGCGTGGGCCTCCGAGTCGCCCACGCTCAACCAGGACAACGAATGGGCCGGCCGTCTGCAGCGCGTCGGCTCGTTCGACGACGAGTTCCGGCGGGAGGCCGAACGGTTACAGTTCGATCTGCAGGGTGCGTGGCGCATCAGCCAGGCGAATGCGGAGTTTAAGCTGTGCCCATCGTACCCGCGGCTGCTGCTGGTGCCGGCCTGCATCTCGGACGATACGCTGCAGAATGTGGCCAGCTTTCGCAGCTCGCGGCGCATACCGGCGGTCGTGTGGCGCCATCAGCGTACCGGCGCGGTGATCGCGCGCTGCAGTCAGCCCGAGGTCGGGTGGCTCGGGTGGCGCAACTCGAAGGATGAGCAGCTGCTGAAGGCGCTGTCCGATGCGTGCTCGTTCGATCGGGGCACGCAGGATAAGGCCGGCGATGGTACGAGACGG]


>consensus_5054#1 CCGCCCACGCGTCCGGGAGGAAGAAAAGCTCACCGTACGATTTACCGAGCTTGCCGGTGA ATCCGTACGTTATCTCGGTCAGACAGATGAAGGCATACTGGCACTGTCCAACTATCGGCT GTTCCTGCAGAAGAACACCACCGGTGCCGAAGTGTCCGTCCCGCTTGGCCTGATCGAATC GACGCAAGTGCGTGACCTGTTCCATCTGATCGTGAACTGCAAAGATGCCAGCACCGTACG ATGTTCGTTTGCCACGTCGGAGCAGTGCAGCGAATGGCACCGGCGGATAACGCTATCGAT CGGTGTGCCCGAAACGCTGGAGGCCCTGTTTGCGTTTCCGTTTCACGCGTGGGCCTCCGA GTCGCCCACGCTCAACCAGGACAACGAATGGGCCGGCCGTCTGCAGCGCGTCGGCTCGTT CGACGACGAGTTCCGGCGGGAGGCCGAACGGTTACAGTTCGATCTGCAGGGTGCGTGGCG CATCAGCCAGGCGAATGCGGAGTTTAAGCTGTGCCCATCGTACCCGCGGCTGCTGCTGGT GCCGGCCTGCATCTCGGACGATACGCTGCAGAATGTGGCCAGCTTTCGCAGCTCGCGGCG CATACCGGCGGTCGTGTGGCGCCATCAGCGTACCGGCGCGGTCATCGCGCGCTGCAGTCA GCCCGAGGTCGGGTGGCTCGGGTGGCGCAACTCGAAGGATGAGCAGCTGCTGAAGGCGCT GTCCGATGCGTGCTCGTTCGATCGGGGCACGCAGGATAAGGCCGGCGATGGTACGAGACG G



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5054#0      CCGCCCACGCGTCCGCCCACGCGTCCGGCCTCCGAAGCGAGCGTACCTCGCTCTCCCGTC 60
consensus_5054#1      ------------CCGCCCACGCGTCCGG------GAGGAAGAAAAGCTCACCGTACGATT 42
                                  ****************       **  **   * *** *  * *  * 

consensus_5054#0      TGTGAAGATCAAGCCGAGTCGTATTCATTCATAAGTTATAAAGACGACCGGGAAGATTGC 120
consensus_5054#1      TACCGAGCTT--GCCGG------TGAATCCGTACGTTATCT---CGGTCAGACAGATGAA 91
                      *    ** *   ****       *  ** * ** *****     **  * *  ****   

consensus_5054#0      TGCGCTGCTACTGGAAGTACAAGAACGCCGCGGCCTATCAAAGCGATCAGAAGAAGGCAA 180
consensus_5054#1      GGCA----TACTGGCACTGTCCAA---CTATCGGCTGTTCCTGC----AGAAGAACACCA 140
                       **     ****** * *     *   *    * ** *    **    *******  * *

consensus_5054#0      AAAACAGACGCAGAATTATCTCGCCCCCGGAACGTTCTGGTCTGGTGGGAAGCATTGGAG 240
consensus_5054#1      ----CCGGTGCCGAAGTGTC-CGTCCC--GCTTGGCCTGATCGAATCGA---CGCAAGTG 190
                          * *  ** *** * ** ** ***  *   *  *** **   * *    *    * *

consensus_5054#0      CGCAGCCAGTGCCAAAAATATAGAGGGTCTATTTGGTCGTGAAAAAGCCTACCGGCAGAG 300
consensus_5054#1      CGTGACCTGTTCCATCTG-ATCGTGAACTGCAAAGATGCCAGCACCGTACGATGTTCGTT 249
                      **   ** ** ***     ** * *         * *      *  *      *   *  

consensus_5054#0      CGATAAGAAGAGGAGCAGAGGAGTTTTTCCCCACTGCTGGAGGACAAGCAAAATACGTCA 360
consensus_5054#1      TGCCACGTCG--GAGCAGTGCAGCGAATGGC-ACCGGCGGATAACGCTATCGATCGGTGT 306
                       *  * *  *  ****** * **    *  * ** *  ***  **       **  **  

consensus_5054#0      GCAGGAACAATCTAGAGCACACCAGGAGTCAACGAT--GGGTCTGAAGTTCCTGCTATTT 418
consensus_5054#1      GCCCGAAACGCTGGAGGCCCTGTTTGCGTTTCCGTTTCACGCGTGGGCCTCCGAGTCGCC 366
                      **  ***         ** *     * **   ** *    *  **    ***   *    

consensus_5054#0      AATAGTCAACAGAGTCAAAATCTCCATGGACGTGGTAGAAAAATCATGGAGGGTTCGGGC 478
consensus_5054#1      CACGCTCAACCAGGACAACGAATGGGCCGGC-CGTCTGCAGCGCGTCGGCTCGTTCGA-C 424
                       *   *****   * ***    *     * *  *   * *       **   *****  *

consensus_5054#0      GACGGTTCCCCGCAATCGTCGATGTGGC-ATGGTGAAGGCGGCTGAGCTCTTCCCGAAGC 537
consensus_5054#1      GACGAGTTCCGGCGGGAGGCCGAACGGTTACAGTTCGATCTGCAGGGTGCGTGGCGCATC 484
                      ****  * ** **    * *     **  *  **     * ** * *  * *  ** * *

consensus_5054#0      CGATCCTCGAGAAGGAGGAAGAAAAGCTCACCGTACGATTTACCGAGCTTGCCGGTGGAA 597
consensus_5054#1      --AGCCAGGCGAATGCGGAGTTTAAGCTGTGCCCATCGTAC-CCGCGGCTGCTGCTGGTG 541
                        * **  * *** * ***    *****   *  *   *   *** *  *** * ***  

consensus_5054#0      TCCGTACCGTTATCTCGGTCAGACAGATGAAGGCATACTGGCA-CTGTC-CAACTATCGG 655
consensus_5054#1      CCGG--CCTGCATCTCGGAC-GATACGCTGCAGAATGTGGCCAGCTTTCGCAGCTCGCGG 598
                       * *  **   ******* * ** *       * **   * ** ** ** ** **  ***

consensus_5054#0      C-TGTTCCTGCAGAAG---AACACCACCGGTG--CCGAAGTGTCCGTCCCGCTTGGCCTG 709
consensus_5054#1      CGCATACCGGCGGTCGTGTGGCGCCATCAGCGTACCGGCGCGGTCATCGCGCGCTGC--A 656
                      *   * ** ** *  *     * *** * * *  ***  * *  * ** ***   **   

consensus_5054#0      ATCGAATCGACG-CAAGTGCGTGACCTGTTCCATCT--GATCGTGAACTGCAAAGATGCT 766
consensus_5054#1      GTCAGCCCGAGGTCGGGTGGCTCGGGTGGCGCAACTCGAAGGATGAGCAGC--TGCTGAA 714
                       **    *** * *  ***  *    **   ** **   *   *** * **   * **  

consensus_5054#0      AGCACCGTACGATGTTCGTTTGCCACGTCGGAGCAGTGCAGCGAATGGCACCGGCGGATA 826
consensus_5054#1      GGCGCTGTCCGATGCGTGCTCGTTCGATCGGGGCA-CGCA--GGATAAGGCCGGCG---- 767
                       ** * ** *****   * * *     **** ***  ***  * **    ******    

consensus_5054#0      ACGCTATCGATCGGTGTGCCCGAAACGCTGGAGGCACTGTTTGCGTTCCCGTTTCACGCG 886
consensus_5054#1      ATGGTACGAGACGG---------------------------------------------- 781
                      * * **     ***                                              

consensus_5054#0      TGGGCCTCCGAGTCGCCCACGCTCA 911
consensus_5054#1      -------------------------
                                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)