These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5069#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1169 fasta sequence [AATATATATACAATTAAATATACATATATCATCTGTAAGCATCACAAGGCAGGGCGCCAGGAACAGTGCGCGTGTAAGATAGAGAACCATGCTGTCACGAATGTATAACGGAAAGTCATCCATGTGGGCCATGTGGCGTCATTAGCGAAAGTTGCGTGATTGGGGATAGGATTGAAATGATGGAATGATGGTTTTTTTGCATTGTAAGTTTACTTTCTACATACCCAGTTCTTTTAGTCAATACTGGCATAATTTCTTTGTGTTGTAAGTAGTAGTACCATCAGCCTAGCAGGCAGACAGAAGAGTACGAATTTACTTTCCCATTAGCTAAGCTTATCTAAAAATCAAGTGTGGCACATTCAGGTGAGCAGAATGTGCAGTTCGAAGCAAAAAATAACCATTGTAACCGCGTGTTAGCAGTGGCACCGCCGGAAGTGGAAGGACATTAAAAAATGGAATTAAAAAAACCACAACATCTCACAATTGGCTGTTTTAATTGGTGTTTTTGTGTTTCAAAATTTATAACAACGTTCCAGTGCAATTGGTGCCGAATTCACGTTTGGGTGCTTTTTTGTCGTTAAAAAAAATACACACACACAACAAGACTGATTAGAGCGGTGACAGCAGCGTTTGGAAAATGGTTTGCCAGCTTGGGCTGGCCGGAACTCATCGAGCTTTCTTTGGTGTCTTTTAGTACTATTGTTTGACAATTTGTAAGATTCTCTTTTCCTTTTTTAACGCATCAGTATGTTTGGAGTGGCTTCTTATTCCATTTAGTCAAATGTTGCGTTTCATGATTTAAATCCGTAGAAGAAAACGAAGCAAAATCGAATCAATGGTATATCTATTAACCGTACCGAAAGGTGTGCGATATGATGGAAATGGTTCAATTCCTGTGCAAGTTAATATGGCAACGAGTTTCAGAAGTAAAATACATTATTGCTTCCACTACTATTACTAACTACTACTACTACTGCTGCTACCGATGAGCTGTAGGAAATGGGTTTGATGCAGATTGCAGAACACATTGCAACGGTATACTAATTAACTTACATCAAACCCTGGAGTGCGCAGTATTTCGTTGTAAAAAAAAGATATATGAAACTGGGTAAGAAAACGCTAACCGACCGGAGAAACAAACCAAATCACTTGAAATAAACCACCGCTTT] [+] EMBL BX609268 [AATATATATACAATTAAATATACATATATCATCTGTAAGCATCACAAGGCAGGGCGCCAGGAACAGTGCGCGTGTAAGATAGAGAACCATGCTGTCACGAATGTATAACGGAAAGTCATCCATGTGGGCCATGTGGCGTCATTAGCGAAAGTTGCGTGATTGGGGATAGGATTGAAATGATGGAATGATGGTTTTTTTGCATTGTAAGTTTACTTTCTACATACCCAGTTCTTTTAGTCAATACTGGCATAATTTCTTTGTGTTGTAAGTAGTAGTACCATCAGCCTAGCAGGCAGACAGAAGAGTACGAATTTACTTTCCCATTAGCTAAGCTTATCTAAAAATCAAGTGTGGCACATTCAGGTGAGCAGAATGTGCAGTTCGAAGCAAAAAATAACCATTGTAACCGCGTGTTAGCAGTGGCACCGCCGGAAGTGGAAGGACATTAAAAAATGGAATTAAAAAAACCACAACATCTCACAATTGGCTGTTTTAATTGGTGTTTTTGTGTTTCAAAATTTATAACAACGTTCCAGTGCAATTGGTGCCGAATTCACGTTTGGGTGCTTTTTTGTCGTTAAAAAAAATACACACACACAACAAGACTGATTAGAGCGGTGACAGCAGCGTTTGGAAAATGGTTTGCCAGCTTGGGCTGGCCGGAACTCATCGAGCTTTCTTTGGTGTCTTTTAGTACTATTGTTTGACAATTTGTAAGATTCTCTTTTCCTTTTTTAACGCATCAGTATGTTTGGAGTGG ] [+] EMBL BX612966 [ AACAAGACTGATTAGAGAGGTGACAGCAGCGTTTGTAAAATGGTTTGCCAGCTTGGGCTGGCCGGAACTCATCGAGCTTTCTTTGGTGTCTTTTAGTACTATTGTTTGACAATTTGTAAGATTCTCTTTTCCTTTTTTAACGCATCAGTATGTTTGGAGTGGCTTCTTATTCCATTTAGTCAAATGTTGCGTTTCATGATTTAAATCCGTAGAAGAAAACGAAGCAAAATCGAATCAATGGTATATCTATTAACCGTACCGAAAGGTGTGCGATATGATGGAAATGGTTCAATTCCTGTGCAAGTTAATATGGCAACGAGTTTCAGAAGTAAAATACATTATTGCTTCCACTACTATTACTAACTACTACTACTACTGCTGCTACCGATGAGCTGTAGGAAATGGGTTTGATGCAGATTGCAGAACACATTGCAACGGTATACTAATTAACTTACATCAAACCCTGGAGTGCGCAGTATTTCGTTGTAAAAAAAAGATATATGAAACTGGGTAAGAAAACGCTAACCGACCGGAGAAACAAACCAAATCACTTGAAATAAACCACCGCTTT] consensusID : consensus_5069#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1016 fasta sequence [CCCGAGGTTATTTACGGGAAGCGACGAAGCGGACGAAAACCGTCGCGTAGTAAAAATTTACAACACAAACCAATACCCAGAACCGTAACTTTTGTAAGCGCAAATTTGCCAGTCAAATTTAACCGCCCTTTACACACACACACACACACACTCTCGCGTGTGCGCATATGGCGACAAGAAAGCTCTTTACGCAAGCGGTTGTGGTGTGCCATTTGTACAGCCTCAGCAATTGGCCAACAGTTCCAAATGGCTGATTAGGATGGTACCATTGCGCATCATCAGGACACGCAACAAACGCTCTACTATACCGGTATGATTACTTGCGCTATGATTAGTTATCTTTGCGCAACACCTCGGGCAAAAGCAAAATCGTCTAATAAGCCTGCAGCCTTTCTTTGCATTTTCAATTCATGCCTTAACACATGCACANCACACACAGGCAAGCAAGCANACACAATTATGCCAGGCCAAGTGGGCAATGTTGCGCGTCAGCGCTTTTTGGAACACGGTTCTTCAGACGATTAAGACAGTCACATTATCAGCGAGCTNTAGCTTCCCCCAGGGGCAGCGGGCAAAATCCATTGGGCCGAAGTGCNGGATCACCATTATGCCAGCACATGGTCCTGTACTGTAAACAGAGAACCAGCGTTATTGTATACATAATANTATAGACCCAAATCATTATATTACACAGTTNAANNGTACTACATATTATCATCTGGTACAGCATCACAAGGCAGGGCGCCAGGAACAGTGCGCGTGCTAAGATAGAGCAACCATGCTGTCACCGAAANCGTCTANACGGNNNAGTCATCCATGTGGAGCCCCATTGTTNGCCCNGCTCACTTTANAGCCGAAACACGTTCGGCCAGCTTGANTCTCGGGGCGCACTTAACGCGGACTCTCGGACANCCTTGCACTGCGGCACACTCGCATCGGGGTAACNCTCATCGGCATCTGCTNNACACGTTTTCTAACTTNTTTCCTCAACGCAATTAACCCCCAAGGTANCNTTC] [+] EMBL AL930769 [CCCGAGGTTATTTACGGGAAGCGACGAAGCGGACGAAAACCGTCGCGTAGTAAAAATTTACAACACAAACCAATACCCAGAACCGTAACTTTTGTAAGCGCAAATTTGCCAGTCAAATTTAACCGCCCTTTACACACACACACACACACACTCTCGCGTGTGCGCATATGGCGACAAGAAAGCTCTTTACGCAAGCGGTTGTGGTGTGCCATTTGTACAGCCTCAGCAATTGGCCAACAGTTCCAAATGGCTGATTAGGATGGTACCATTGCGCATCATCAGGACACGCAACAAACGCTCTACTATACCGGTATGATTACTTGCGCTATGATTAGTTATCTTTGCGCAACACCTCGGGCAAAAGCAAAATCGTCTAATAAGCCTGCAGCCTTTCTTTGCATTTTCAATTCATGCCTTAACACATGCACANCACACACAGGCAAGCAAGCANACACAATTATGCCAGGCCAAGTGGGCAATGTTGCGCGTCAGCGCTTTTTGGAACACGGTTCTTCAGACGATTAAGACAGTCACATTATCAGCGAGCTNTAGCTTCCCCCAGGGGCAGCGGGCAAAATCCATTGGGCCGAAGTGCNGGATCACCATTATGCCAGCACATGGTCCTGTACTGTAAACAGAGAACCAGCGTTATTGTATACATAATANTATAGACCCAAATCATTATATTACACAGTTNAANNGTACTACATATTATCATCTGGTACAGCATCACAAGGCAGGGCGCCAGGAACAGTGCGCGTGCTAAGATAGAGCAACCATGCTGTCACCGAAANCGTCTANACGGNNNAGTCATCCATGTGGAGCCCCATTGTTNGCCCNGCTCACTTTANAGCCGAAACACGTTCGGCCAGCTTGANTCTCGGGGCGCACTTAACGCGGACTCTCGGACANCCTTGCACTGCGGCACACTCGCATCGGGGTAACNCTCATCGGCATCTGCTNNACACGTTTTCTAACTTNTTTCCTCAACGCAATTAACCCCCAAGGTANCNTTC] consensusID : consensus_5069#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 892 fasta sequence [CGAGGTTAAATCTCAATAATATACTCAAACTAAATTCAATCGATTTACGGGAAGCGACGAAGCGGACGAAAACCGTACGCGTAGTAAAAATTTACAACACAAACCAATACCCAGAACCGTAACTTATATGTAAGCGCAAATATTTAGCCAGTACAAATTTAACCGCCCTATTACACACACACACACACACACTACTCGCGTAGTNGCGCATAATGGCTGACCAAAGAAAGCTCTATATACGCAAGCGTGTTAGTAGGTAGTAGCCATATTTGTAACAAGCCTACCAGGCCAATATTGGCCCAACAGTATACACAAACTGGCTTGCNTTNANCGATNGGTAACCCATATTGCGCNTCATCAAGGTGGACAACNGCCAACCTAANACCCGGCCTACCTAACCTACTACCCCGGCTANATAGCACTATCACCCTCTTGGCNGCCCTACTGGACTANAAGGTCATAATACCTCTCTCGACNGCCANAAGCCCTCACTCCCTCGCGCCCACNAGCANGCCCACCAGCACNATNCNGCTCCTTAAACTACANACGGCCTTGGCGAGGGCCTATATCGCNCANCAAGGCCTATCNTCCAGCGCTTCTTNCTTTGGGCCCTTGACACNCCAATTTGGTACACCACCCACAAACTTGGGGANCANGTACACAACTNCNAGCAGCCATTCTCCNTTTGCCCACGGGCCAACAGAGGCTAGGGGGGGCACNACTATGGTCNCCNGNGGANNCTAACACACCCGGCCTGAGTCCACCGGGANAAGACCCGCGGTCTCAGTATCACACGCCACANNTNAACCNTCCACACGTCNACACNCNCAATTTCAACGACGGNCAGCTCAAACCTATTGTCCGCCTCCCGGGCGAGCAGGGNGNGCCAAAC] [+] EMBL AL692102 [CGAGGTTAAATCTCAATAATATACTCAAACTAAATTCAATCGATTTACGGGAAGCGACGAAGCGGACGAAAACCGTACGCGTAGTAAAAATTTACAACACAAACCAATACCCAGAACCGTAACTTATATGTAAGCGCAAATATTTAGCCAGTACAAATTTAACCGCCCTATTACACACACACACACACACACTACTCGCGTAGTNGCGCATAATGGCTGACCAAAGAAAGCTCTATATACGCAAGCGTGTTAGTAGGTAGTAGCCATATTTGTAACAAGCCTACCAGGCCAATATTGGCCCAACAGTATACACAAACTGGCTTGCNTTNANCGATNGGTAACCCATATTGCGCNTCATCAAGGTGGACAACNGCCAACCTAANACCCGGCCTACCTAACCTACTACCCCGGCTANATAGCACTATCACCCTCTTGGCNGCCCTACTGGACTANAAGGTCATAATACCTCTCTCGACNGCCANAAGCCCTCACTCCCTCGCGCCCACNAGCANGCCCACCAGCACNATNCNGCTCCTTAAACTACANACGGCCTTGGCGAGGGCCTATATCGCNCANCAAGGCCTATCNTCCAGCGCTTCTTNCTTTGGGCCCTTGACACNCCAATTTGGTACACCACCCACAAACTTGGGGANCANGTACACAACTNCNAGCAGCCATTCTCCNTTTGCCCACGGGCCAACAGAGGCTAGGGGGGGCACNACTATGGTCNCCNGNGGANNCTAACACACCCGGCCTGAGTCCACCGGGANAAGACCCGCGGTCTCAGTATCACACGCCACANNTNAACCNTCCACACGTCNACACNCNCAATTTCAACGACGGNCAGCTCAAACCTATTGTCCGCCTCCCGGGCGAGCAGGGNGNGCCAAAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5069#1 --------------------------------------------------------CCCG 4 consensus_5069#2 -----------------------CGAGGTTAAATCTCAATAATATACTCAAACTAAATTC 37 consensus_5069#0 AATATATATACAATTAAATATACATATATCATCTGTAAGCATCACAAGGCAGGGCGCCAG 60 consensus_5069#1 AGGTTATTTACGGGAAGCGACGAAGCGGACGAAAAC-CGT-CGCGTAGTAAAAATTTA-C 61 consensus_5069#2 AATCGATTTACGGGAAGCGACGAAGCGGACGAAAAC-CGTACGCGTAGTAAAAATTTA-C 95 consensus_5069#0 GAACAGTGCGCGTGTAAGATAGAGAACCATGCTGTCACGAATGTATAACGGAAAGTCATC 120 * ** * * ** * * * ** * ** *** * * * consensus_5069#1 AACACAAACCA-ATACCCAGAACCGTAACTTTT--GTAAGCGCAAATTT---GCCAGT-C 114 consensus_5069#2 AACACAAACCA-ATACCCAGAACCGTAACTTATATGTAAGCGCAAATATTTAGCCAGTAC 154 consensus_5069#0 CATGTGGGCCATGTGGCGTCATTAGCGAAAGTTGCGTGATTGGGGATAGGATTGAAATGA 180 * *** * * * * * * ** * * ** * * consensus_5069#1 AAATTTAACCGCCCT-TTACAC-----ACACAC-----ACACACACACT-CTCGC-GTG- 160 consensus_5069#2 AAATTTAACCGCCCTATTACAC-----ACACAC-----ACACACACACTACTCGC-GTAG 203 consensus_5069#0 TGGAATGATGGTTTTTTTGCATTGTAAGTTTACTTTCTACATACCCAGTTCTTTTAGTCA 240 * * * * ** ** ** *** ** ** * ** ** consensus_5069#1 -TGC--GCATA-TGGC-----GAC--AAGAA--AGCTCTTTA--C---GCAAGCG-GTTG 201 consensus_5069#2 TNGC--GCATAATGGCT----GACCAAAGAA--AGCTCTATATAC---GCAAGCGTGTTA 252 consensus_5069#0 ATACTGGCATAATTTCTTTGTGTTGTAAGTAGTAGTACCATCAGCCTAGCAGGCAGACAG 300 * ***** * * * *** * ** * * * *** ** consensus_5069#1 TGGTGT----GCCATTTGTACAGCCTCAGCAATTGGCCAACAGTT-CCAAATGGCTGATT 256 consensus_5069#2 GTAGGTAGTAGCCATATTTGTAACAAGCCTACCAGGCCAATATTGGCCCAACAGTATACA 312 consensus_5069#0 AAGAGTACGAATTTACTTTCCCATTAGCTAAGCTTATCTAAAAATCAAGTGTGGCACATT 360 ** * * * * * * * * consensus_5069#1 AGGATGGTACCATTGCGCATCATCAGGACACGCAACAAACGCTCTACTATACCGGTATGA 316 consensus_5069#2 CAAACTG-GCTTGCNTTNANCGATNGGTAACCCATATTGCGCNTCATCAAGGTGG-ACAA 370 consensus_5069#0 CAGGTGAGCAGAATGTGCAGT-TCGAAGCAAAAAATAACCATTGTAACCGCGTGTTAGCA 419 * * * * * * * * consensus_5069#1 TTACTTGCGCTATGATTAGTT--ATCTTTGCGCAACACCTCGGGCAAA-AGCAAAATCGT 373 consensus_5069#2 CNGCCAACCTAANACCCGGCC--TACCTAACCTACTACCCCGGCTANATAGCACTATCAC 428 consensus_5069#0 GTGGCACCGCCGGAAGTGGAAGGACATTAAAAAATGGAATTAAAAAAACCACAACATCTC 479 * * * * * * ** *** consensus_5069#1 CTAATAAGCCTGCAGCCTT----TCTTTGCATTTTCAA-TTCATGCCTTAACACATGCAC 428 consensus_5069#2 CCTCTTGGCN----GCCCT----AC--TGGACTANAAG-GTCATA---------ATACCT 468 consensus_5069#0 ACAATTGGCTGTTTTAATTGGTGTTTTTGTGTTTCAAAATTTATAACAACGTTCCAGTGC 539 * ** * ** * * * ** consensus_5069#1 ANCACACACAGGCAAGCAAGCANACACAATTATGCCAGGCCAAG-TGGGCAATGTTGCGC 487 consensus_5069#2 CTCTCG-ACNGCCA--NAAGCCCTCAC---TCCCTCGCGCCCA--CNAGCAN----GCCC 516 consensus_5069#0 AATTGGTGCCGA-ATTCACGTTTGGGTGCTTTTTTGTCGTTAAAAAAAATACACACACAC 598 * * * * * * * * * * * consensus_5069#1 GTCAGCGCTTTTTGGA---------ACACGGTTCTTCAGACGATTAAGACAGTCACATTA 538 consensus_5069#2 ACCAGCACN----------------ATNCNGCTCCTTAAACTAC--ANACGGCC---TTG 555 consensus_5069#0 AACAAGACTGATTAGAGCGGTGACAGCAGCGTTTGGAAAATGGTTTGCCAGCTTGGGCTG 658 ** * * * * * * consensus_5069#1 TCAGCGAGCTNT--AGCTTCCCCCAGGGGC-AGCGG--GCAAAATCCATTGGGCCGAAGT 593 consensus_5069#2 GCGAGGGCCTAT--ATCGCNCANCAAGGCCTATCNT--CCAGCGCTTCTTNCTTTGGGCC 611 consensus_5069#0 GCCGGAACTCATCGAGCTTTCTTTGGTGTCTTTTAGTACTATTGTTTGACAATTTGTAAG 718 * * * * * * * * * consensus_5069#1 GCNGGATCACCATTATGCCAGCACATGGTCCTGTACTG--TAAACAGAGAACCAGCGTTA 651 consensus_5069#2 CTTGACACNCCAATTTGGTACACCACCCACAAACTTGG--GGANCANGTACACAAC-TNC 668 consensus_5069#0 ATTCTCTTTTCCTTTT-TTAACGCATCAGTATGTTTGGAGTGGCTTCTTATTCCATTTAG 777 * * * * ** * * * * consensus_5069#1 TTGTATACA-----TAATANTATAGA-CC-CAAATCATTATATTACACAGTTNAAN-NGT 703 consensus_5069#2 NAGCAGCCA-----TTCTCCNTTTGC-CCACGGGCCA-------ACAGAGGCTAGG-GGG 714 consensus_5069#0 TCAAATGTTGCGTTTCATGATTTAAATCCGTAGAAGAAAACGAAGCAAAATCGAATCAAT 837 * * * * ** * ** * * consensus_5069#1 ACTACAT--ATTATCATCTGGTACAGCATCACAAGGCAGGGCGCCAGGAACAGTGCGCGT 761 consensus_5069#2 GGCACN---ACTATGGTCNCCNGNGG-ANNCTAACACACCCGGCCTGAGTCCAC---CGG 767 consensus_5069#0 GGTATATCTATTAACCGTACCGAAAGGTGTGCGATATGATGGAAATGGTTCAATTCCTGT 897 * * ** * * * * * consensus_5069#1 GCTAA--GATAGAGCAACCATGCTGTCACCGAAANCGTCTANACGGNNNAGTCATCCATG 819 consensus_5069#2 GANAA--GACCC-GCGGTCTCAGTATCACACGCCACANNTNAACCNTCCACACGTCNACA 824 consensus_5069#0 GCAAGTTAATATGGCAACGAGTTTCAGAAGTAAAATACATTATTGCTTCCACTACTATTA 957 * * * ** * * * consensus_5069#1 TGGAGCCCCATTGTTNGCCCNGCTCACTTTANAGCCGAAACACGTTCGGCCAGCTTGANT 879 consensus_5069#2 CN----CNCAATTTCAACGACGGNCAGCTCAAACCT-----ATTGTCCGCCTCCCGGGCG 875 consensus_5069#0 CTAACTACTACTACTACTGCTGCT-ACCGATGAGCTGTAGGAAATGGGTTTGATGCAGAT 1016 * * * * * * * consensus_5069#1 CTCGGGGCGCACT-TAACG---------CGGACTCTCGGACANCCTTGCACTGCGGCACA 929 consensus_5069#2 AGCAGGGNGNGCC-AAAC------------------------------------------ 892 consensus_5069#0 TGCAGAACACATTGCAACGGTATACTAATTAACTTACATCAAACCCTGGAGTGCGCAGTA 1076 * * *** consensus_5069#1 CTCGCATCGGGGTAACNCTCATCGGCATCTGCTNNACACGTTTTCTAACTTNTTTCCTCA 989 consensus_5069#2 ------------------------------------------------------------ consensus_5069#0 TTTCGTTGTAAAAAAAAGATATATGAAACTGGGTAAGAAAACG-CTAACCGACCGGAGAA 1135 consensus_5069#1 ACGCAATTAACC-CCCAAGGTANCNTTC------ 1016 consensus_5069#2 ---------------------------------- consensus_5069#0 ACAAACCAAATCACTTGAAATAAACCACCGCTTT 1169 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||