These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5072#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 802 fasta sequence [GCAGATTGCCGAGGTTAATGAGCTTTCCACTCTATATTACCTAAAAGGAGAGAATCTGAATGATTTGGAATCTTTTTCCCAGCTGTTCCTTCAATATGTACCTGCCTTCCTCGACTCTGTACCCTTCAATGGGTACGATTTCATAATTAGAAACTGCCAAAAAACGGACAGCTATTATCAACAACCAATGAGTAACGAAAGCAAGTCTATTAGATCGATTATACTTGGCATGAACTGTACCTACTTAAAGGCCATAGCAACCAACAACCAAAAAAGCATACAGACCACAGGGAAGACACACACACATACACTCATAAACATCCCANCAGCTATGTTCCANACGAAGAAGGCCAANACATAATTCTCGGGTCAGGAACNACTGACGTTTATTGCAACCCCTCCCCTTTACTGCTCGAGTGATAAGNGCNNAACCGCAAATGCGAATCAGGTACTTGTCGGGAACGCANAGCGCCCACGGTTCATCTGTAAGCCAANNAATCCCGACNGTANNAGCCAACGCAGCCCATCCCCCAGTCACCGGGACATGACACAACCTCACTCTAACAGGGCTCNACCCTCACACGCAGGGCTCCCTTCTTNTCTACGGGCGGCTGGGCAGAAACAANGAAGACACAAGCGCCATTTGCGCACACCCCCNAGGGCACCATTACCCCACNCACCCCCAGCAACTCACCAACTTTACNCCGCAAGCGCNAAAAGACCGGGAAGGCAAACGGGTCCNACNAACCGGCGAACCNCACANAGCCACCCAAAAACCTTAAAACAAAGAANTGGCCCTCAT] [+] EMBL AL692119 [GCAGATTGCCGAGGTTAATGAGCTTTCCACTCTATATTACCTAAAAGGAGAGAATCTGAATGATTTGGAATCTTTTTCCCAGCTGTTCCTTCAATATGTACCTGCCTTCCTCGACTCTGTACCCTTCAATGGGTACGATTTCATAATTAGAAACTGCCAAAAAACGGACAGCTATTATCAACAACCAATGAGTAACGAAAGCAAGTCTATTAGATCGATTATACTTGGCATGAACTGTACCTACTTAAAGGCCATAGCAACCAACAACCAAAAAAGCATACAGACCACAGGGAAGACACACACACATACACTCATAAACATCCCANCAGCTATGTTCCANACGAAGAAGGCCAANACATAATTCTCGGGTCAGGAACNACTGACGTTTATTGCAACCCCTCCCCTTTACTGCTCGAGTGATAAGNGCNNAACCGCAAATGCGAATCAGGTACTTGTCGGGAACGCANAGCGCCCACGGTTCATCTGTAAGCCAANNAATCCCGACNGTANNAGCCAACGCAGCCCATCCCCCAGTCACCGGGACATGACACAACCTCACTCTAACAGGGCTCNACCCTCACACGCAGGGCTCCCTTCTTNTCTACGGGCGGCTGGGCAGAAACAANGAAGACACAAGCGCCATTTGCGCACACCCCCNAGGGCACCATTACCCCACNCACCCCCAGCAACTCACCAACTTTACNCCGCAAGCGCNAAAAGACCGGGAAGGCAAACGGGTCCNACNAACCGGCGAACCNCACANAGCCACCCAAAAACCTTAAAACAAAGAANTGGCCCTCAT] consensusID : consensus_5072#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 578 fasta sequence [AACCAATGAGTAACGAAAGCAAGTCTATTAGATCGATTATATTGGCATGAATGTAATATTAAAGCATAGCAACAACAACAAAAAAGCATACAGACACAGGAAGACACACACACATACATCATAACATCCAGCAGTATGTTAAAAGAAGAAGGCCAAACATATTTTGGTAGGAAATGAGTTATGAACCCTCCCTTTTTGCTCGATGATAGGCAAACGAATGCGATCAGGTATTGTCGGAACGAAAGCGAGAAGGTTTTTGTACCAAAATCCGACGTAAACCAACCACCCATCCCAAAAAGGACATGAAAACCTCATCTAAAGGTTTACTTTTTGTCTTTTCGGTGGAAAAAAAAACATGAAACAGGAATACAAAACACACACATACACAACCAACCGGAGGAAGGTAAAACGCGACAAAACACAACTAACAAGATGCTTATTAGAGTGTAAAGAAATGAAAGAAGTAAAAAAACGCAGCAGTAAAGGAAACATCGCCAAAATCGATGAACAGAAGGGGGCAAAGTGGATGAATTGGAGCAGAACAAAGCATTGTATCAGTATGTTTAAACAATATGAAA] [+] EMBL BX608819 [AACCAATGAGTAACGAAAGCAAGTCTATTAGATCGATTATATTGGCATGAATGTAATATTAAAGCATAGCAACAACAACAAAAAAGCATACAGACACAGGAAGACACACACACATACATCATAACATCCAGCAGTATGTTAAAAGAAGAAGGCCAAACATATTTTGGTAGGAAATGAGTTATGAACCCTCCCTTTCTGCTCGATGATAGGCAAACGAATGCGATCAGGTATTGTCGGAACGAAAGC AGAAGGTTTTTGTACCAAAATCCGACGTAAACCAACCACCCATCCCAAAAAGGACATGAAAACCTCATCTAAAGGTTTACTTTTTGTCTTTTCGGTGGAAAAAAAAACATGAAACAGGAATACAAAACACACACATACACAACCAACCGGAGGAAGGTAAAACGCGACAAAACACAACTAACAAGATGCTTATTAGAGTGTAAAGAAA ] [-] EMBL BX611892 [ ATATTAAAGCATAGCAACAACAACAAAAAAGCATACAGACACAGGAAGACACACACACATACATCATAACATCCAGCAGTATGTTAAAAGAAGAAGGCCAAACATATTTTGGTAGGAAATGAGTTATGAACCCTCCCTTTTTGCTCGATGATAGGCAAACGAATGCGATCAGGTATTGTCGGAACGAAAGCGAGAAGGTTTTTGTACCAAAATCCGACGTAAACCAACCACCCATCCCAAAAAGGACATGAAAACCTCATCTAAAGGTTTACTTTTTGTCTTTTCGGTGGAAAAAAAAACATGAAACAGGAATACAAAACACACACATACACAACCAACCGGAGGAAGGTAAAACGCGACAAAACACAACTAACAAGATGCTTATTAGAGTGTAAAGAAATGAAAGAAGTAAAAAAACGCAGCAGTAAAGGAAACATCGCCAAAATCGATGAACAGAAGGGGGCAAAGTGGATGAATTGGAGCAGAACAAAGCATTGTATCAGTATGTTTAAACAATATGAAA] [-] EMBL BX612060 [ TTTGGTGGGAAATGAGTTATGACCCCTCCCTTTTTGCTGGATGATAGGCAAACGAATGCGATCAGGTATTGTCGGAACGAAAGCGAGAAGGTTTTTGTACCAAAATCCGAGGTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5072#0 GCAGATTGCCGAGGTTAATGAGCTTTCCACTCTATATTACCTAAAAGGAGAGAATCTGAA 60 consensus_5072#1 ------------------------------------------------------------ consensus_5072#0 TGATTTGGAATCTTTTTCCCAGCTGTTCCTTCAATATGTACCTGCCTTCCTCGACTCTGT 120 consensus_5072#1 ------------------------------------------------------------ consensus_5072#0 ACCCTTCAATGGGTACGATTTCATAATTAGAAACTGCCAAAAAACGGACAGCTATTATCA 180 consensus_5072#1 ------------------------------------------------------------ consensus_5072#0 ACAACCAATGAGTAACGAAAGCAAGTCTATTAGATCGATTATACTTGGCATGAACTGTAC 240 consensus_5072#1 --AACCAATGAGTAACGAAAGCAAGTCTATTAGATCGATTATA-TTGGCATGAA-TGTAA 56 ***************************************** ********** **** consensus_5072#0 CTACTTAAAGGCCATAGCAACCAACAACCAAAAAAGCATACAGACCACAGGGAAGACACA 300 consensus_5072#1 T--ATTAAAG--CATAGCAAC-AACAAC-AAAAAAGCATACAGAC-ACAGG-AAGACACA 108 ****** ********* ****** **************** ***** ******** consensus_5072#0 CACACATACACTCATAAACATCCCANCAGCTATGTTCCANACGAAGAAGGCCAANACATA 360 consensus_5072#1 CACACATACA-TCATAA-CATCC-AGCAG-TATGTT--AAAAGAAGAAGGCCAAA-CATA 161 ********** ****** ***** * *** ****** * * ************ **** consensus_5072#0 ATTCTCGGGTCAGGAACNACTGACGTTTATTGCAACCCCTCCCCTTTACTGCTCGAGTGA 420 consensus_5072#1 TTTT---GGTAGGAAATGA---------GTTATGAACCCTCCCTTTT--TGCTCGA-TGA 206 ** *** * ** * ** * ******* *** ******* *** consensus_5072#0 TAAGNGCNNAACCGCAAATGCGAATCAGGTACTTGTCGGGAACGCANAGCGCCCACGGTT 480 consensus_5072#1 TA--GGCAAA----CGAATGCGA-TCAGGTA-TTGTCGGAACGAAAGCGAGAAGGTTTTT 258 ** ** * * ******* ******* ******* * * * * ** consensus_5072#0 CATCTGTAAGCCAANNAATCCCGACNGTANNAGCCAACGCAGCCC---ATCCCCCAGTCA 537 consensus_5072#1 GTACCAAAATCCGACGTAAACCAACCACCCATCCCAAAAAGGACATGAAAACCTCATCTA 318 * ** ** * * ** ** **** * * * ** ** * consensus_5072#0 CCGGGACATGACACAACCTCACTCT----AACAGGGCTCNACCCTCACACGCAGGGCTCC 593 consensus_5072#1 AAGGTTTACTTTTTGTCTTTTCGGTGGAAAAAAAAACATGAAACAGGAATACAAAACACA 378 ** * * * * * ** * * * * * ** * * consensus_5072#0 CTTCTTNTCTACGGGCGGCTGGGCAGAAACAANGAAGACACAAGCGCCATTTGCGC-ACA 652 consensus_5072#1 C---ACATACACAACCAACCGGAGGAAGGTAAAACGCGACAAAACACAACTAACAAGATG 435 * * ** * * ** * ** ** * * * * * * consensus_5072#0 CCCCCNAGGGCACCATTACCCCACNCACCCCCAGCAACTCACCAACTTT----ACNCCGC 708 consensus_5072#1 CTTATTAGAGTGTAAAGAAATGAAAGAAGTAAAAAAACGCAGCAGTAAAGGAAACATCGC 495 * ** * * * * * * *** ** ** ** *** consensus_5072#0 AAGCGCNAAAAGACCGGGAAGGCAAACGGGTCCNACNAACCGGCGAACCNCACANAGCCA 768 consensus_5072#1 CAAAATCGATGAACAGAAGGGGGCAAAGTG---GATGAATTGGAGCAGAACAAAGCATTG 552 * * ** * ** ** * * * ** ** * * ** * consensus_5072#0 CCCAAAAACCTTAAAACAAAGAANTGGCCCTCAT 802 consensus_5072#1 TATCAGTATGTTTAAACAATATGAAA-------- 578 * * ** ****** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||