These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5075#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 965 fasta sequence [CGCGGTTTATCCTAAAACCAAACAAAAATTAAATGTACACATGGTAAAAGACAAAATTACGACACAGCCCCGGCACCACAACCGGCAAAAGTTTAAATCGATACAACATAAAAAGGTGAAATAAAACAGCATATACACGGTGCAATATACACGTAACTACGGATCTAGTAATGTGTACTCTAAGCATAAATGTACGAAAGCAGAACATTGAGGAAATTTATTTTACCGGGTAAAATTATTCAGTCAGTAAACGCAAACAGCGCCACATAACGACCGATACACCAATATGATTGCCCCAGTATTGAGGCCGATTATGCTAAATGATATNNTAACGTANAGATACATGATAAAACCGGGAGTATATACAGCTCTTGCAATTATAAGCGTATATTCAGANNANNNGTATTAATATACTATTATACCTGGTTACNAACATATTNTACTACAAACACGTTAAGTATACGTATGTATGCTCACAGGTTTTACCCTATCTATTCCTCGAGTTTCTTATTTACCACGTGCCAAATCACATAATAAATCACTATATCTAACATATTTCCANATNTATTCCCCTCTTACCCTAGCACATTCACATNGCCTAATGTTACGCTACAGCAACCNTAAATNGGCCTCAAAACTTAACATACTTAAAANCCCTNTCCCTAATGGTNTAAANAGACCCACAACCAAATTAAAACCGGCTAAAAGTGGNCCANTTGAAAAAACCCCCAATTNATGACANNATCNCACGCCACTNACNCTGGGTCAATNAGTTNACTNATCCGCACAACCCAACNCAACCGGGGGATATACACCCGGACATCGGGCNTNACACGGGTCAGCNCCNAACCACCAGNGGATCTGGAATCCCAAANCAACTGGCACAATATAGGCCCCNCTATCTGGCGGCTTGNCAAACTTCAATATCCAAAANNCTCAGGACACACACAAACTGATTGTACNAC] [+] EMBL AL692122 [CGCGGTTTATCCTAAAACCAAACAAAAATTAAATGTACACATGGTAAAAGACAAAATTACGACACAGCCCCGGCACCACAACCGGCAAAAGTTTAAATCGATACAACATAAAAAGGTGAAATAAAACAGCATATACACGGTGCAATATACACGTAACTACGGATCTAGTAATGTGTACTCTAAGCATAAATGTACGAAAGCAGAACATTGAGGAAATTTATTTTACCGGGTAAAATTATTCAGTCAGTAAACGCAAACAGCGCCACATAACGACCGATACACCAATATGATTGCCCCAGTATTGAGGCCGATTATGCTAAATGATATNNTAACGTANAGATACATGATAAAACCGGGAGTATATACAGCTCTTGCAATTATAAGCGTATATTCAGANNANNNGTATTAATATACTATTATACCTGGTTACNAACATATTNTACTACAAACACGTTAAGTATACGTATGTATGCTCACAGGTTTTACCCTATCTATTCCTCGAGTTTCTTATTTACCACGTGCCAAATCACATAATAAATCACTATATCTAACATATTTCCANATNTATTCCCCTCTTACCCTAGCACATTCACATNGCCTAATGTTACGCTACAGCAACCNTAAATNGGCCTCAAAACTTAACATACTTAAAANCCCTNTCCCTAATGGTNTAAANAGACCCACAACCAAATTAAAACCGGCTAAAAGTGGNCCANTTGAAAAAACCCCCAATTNATGACANNATCNCACGCCACTNACNCTGGGTCAATNAGTTNACTNATCCGCACAACCCAACNCAACCGGGGGATATACACCCGGACATCGGGCNTNACACGGGTCAGCNCCNAACCACCAGNGGATCTGGAATCCCAAANCAACTGGCACAATATAGGCCCCNCTATCTGGCGGCTTGNCAAACTTCAATATCCAAAANNCTCAGGACACACACAAACTGATTGTACNAC] consensusID : consensus_5075#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 949 fasta sequence [TACTGGTTTTCAATGGTCGTGTTAAAAAAACTTACGTGCGTTAA-ACTCAAACCAATAACTGTTTCAAACCGATGCTCCAATTGAACTTTAACAAACACAGGTTATATAATGCCGCAAGCAGTCGCGGAAGGTTTATTGTTAAAAATACACTCAAACACACTCTATTGTTACTCTTTATCTATCCTAAAACCAAACAAAAATTAAATGTAACACATGGAAAAGACAAAATTACGACACAGCCCCGGCACCACAACCGGCAAAAGTTTAAATCGATACAACATAAAAAGGTGAAATAAAACAGCATATACACGGTGCAATATACACGTAACTCGGATCTAGTAATGTGTCTCTAAGCATAAATGTACGAAAGCAGAACATTGAGGAAATTTATTTTACCGTTAAAATTATTCAGTCAGTAAACGCTAACAGCGCCACATAACCGACCGATACACCAATATGATTGAAAAGTATTGAGCAGATTATGCTAAATGATATTTAACGTAAGATACATGATAAAACCGGGAGTTACACAGCTCTTGCAATTTTGCGTATTTCAGTTTTGTTTATATCTTTTACCTGGTTACAAACATTTTTTTTACAAACACGTTAAGTTCGTATGTTGCTCACGGTTTTCCTTCTATTCCTGAGTTTCTTATTACCACGTGCAATCAATATAATCACTTTCTAATATTTCATTTATTCCCTCTTCCCTAGAATCAATGCTATGTTGTAGAGACTAATGCTAATAATATAATCTTCTATGTTAGCCACATACGTAGTGCAT-GAAACATTTTATAAGATACTGTTATATTTTAGACAATGGGTTTCGTTTGTTTTGTTTTACAATGTTGATCAATTGATTTGCCTTTGGGTTTATTTATTTAATTTGTCAATAAATGTTATATTATGTGCAAGCTTCAAAAACAAAAAAAAAAAAACGCCAAATGTG] [-] EMBL CNS09NQR [TACTGGTTTTCAATGGTCGTGTTAAAAAAACTTACGTGCGTTAA ACTCAAACCAATAACTGTTTCAAACCGATGCTCCAATTGAACTTTAACAAACACAGGTTATATAATGCCGCAAGCAGTCGCGGAAGGTTTATTGTTAAAAATACACTCAAACACACTCTATTGTTACTCTTTATCTATCCTAAAACCAAACAAAAATTAAATGTAACACATGGAAAAGACAAAATTACGACACAGCCCCGGCACCACAACCGGCAAAAGTTTAAATCGATACAACATAAAAAGGTGAAATAAAACAGCATATACACGGTGCAATATACACGTAACTCGGATCTAGTAATGTGTCTCTAAGCATAAATGTACGAAAGCAGAACATTGAGGAAATTTATTTTACCGTTAAAATTATTCAGTCAGTAAACGCTAACAGCGCCACATAACCGACCGATACACCAATATGATTGAAAAGTATTGAGCAGATTATGCTAAATGATATTTAACGTAAGATACATGATAAAACCGGGAGTTACACAGCTCTTGCAATTTTGCGTATTTCAGTTTTGTTTATATCTTTTACCTGGTTACAAACATTTTTTTTACAAACACGTTAAGTTCGTATGTTGCTCACGGTTTTCCTTCTATTCCTGAGTTTCTTATTACCACGTGCAATCAATATAATCACTTTCTAATATTTCATTTATTCCCTCTTCCCTAGAATCAATGCTATGTTGTAGAGACTAATGCTAATAATATAATCTTCTATGTTAGCCACATACGTAGTGCAT GAAACATTTTATAAGATACTGTTATATTTTAGACAATGGGTTTCGTTTGTTTTGTTTTACAATGTTGATCAATTGATTTGCCTTTGGGTTTATTTATTTAATTTGTCAATAAATGTTATATTAT ] [+] EMBL CNS09NQQ [ GTTAAAAACACTTACGTGCGTTAACACTCAAACCAATAACTGTTTCAAACCGATGCTCCAATTGAACTTTAACAAACACAGGTTATATAATGCCGCAAGCAGTCGCGGAAGGTTTATTGTTAAAAATACACTCAAACACACTCTATTGTTACTCTTTATCTATCCTAAAACCAAACAAAAATTAAATGTAACACATGGAAAAGACAAAATTACGACACAGCCCCGGCACCACAACCGGCAAAAGTTTAAATCGATACAACATAAAAAGGTGAAATAAAACAGCATATACACGGTGCAATATACACGTAACTCGGATCTAGTAATGTGTCTCTAAGCATAAATGTACGAAAGCAGAACATTGAGGAAATTTATTTTACCGTTAAAATTATTCAGTCAGTAAACGCTAACAGCGCCACATAACCGACCGATACACCAATATGATTGAAAAGTATTGAGCAGATTATGCTAAATGATATTTAACGTAAGATACATGATAAAACCGGGAGTTACACAGCTCTTGCAATTTTGCGTATTTCAGTTTTGTTTATATCTTTTACCTGGTTACAAACATTTTTTTTACAAACACGTTAAGTTCGTATGTTGCTCACGGTTTTCCTTCTATTCCTGAGTTTCTTATTACCACGTGCAATCAATATAATCACTTTCTAATATTTCATTTATTCCCTCTTCCCTAGAATCAATGCTATGTTGTAGAGACTAATGCTAATAATATAATCTTCTATGTTAGCCACATACGTAGTGCATGGAAACATTTTATAAGATACTGTTATATTTTAGACAATGGGTTTCGTTTGTTTTGTTTTACAATGTTGATCAATTGATTTGCCTTTGGGTTTATTTATTTAATTTGTCAATAAATGTTATATTATGTGCAAGCTTCAAAAACAAAAAAAAAAAAACGCCAAATGTG] consensusID : consensus_5075#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 190 fasta sequence [ATACCCTCCCCCCCCCTCTATTGTTACTCTTTATTTATCCTAAAACCAAACAAAAATTAAATGTAACCCATGGAAAAGACAAAATTGGGACCCAGCCCCGGCATCCCAACCGGCAAAAGTTTAAATCGATTCAACATAAAAAGGGGAAATAAAACAGCATATACCCGGGGCAATATACCCGTAACTCGGA] [-] EMBL BM633910 [ATACCCTCCCCCCCCCTCTATTGTTACTCTTTATTTATCCTAAAACCAAACAAAAATTAAATGTAACCCATGGAAAAGACAAAATTGGGACCCAGCCCCGGCATCCCAACCGGCAAAAGTTTAAATCGATTCAACATAAAAAGGGGAAATAAAACAGCATATACCCGGGGCAATATACCCGTAACTCGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5075#1 TACTGGTTTTCAATGGTCGTGTTAAAAAAACTTACGTGCGTTAAACTCAAACCAATAACT 60 consensus_5075#2 ------------------------------------------------------------ consensus_5075#0 ------------------------------------------------------------ consensus_5075#1 GTTTCAAACCGATGCTCCAATTGAACTTTAACAAACACAGGTTATATAATGCCGCAAGCA 120 consensus_5075#2 ------------------------------------------------------------ consensus_5075#0 ------------------------------------------------------------ consensus_5075#1 GTCGCGGAAGGTTTATTGTTAAAAATACACTCAAACACACTCTATTGTTACTCTTTATCT 180 consensus_5075#2 ------------------------ATACCCTCCCCCCCCCTCTATTGTTACTCTTTATTT 36 consensus_5075#0 ----------------------------------------------------CGCGGTTT 8 * * * consensus_5075#1 ATCCTAAAACCAAACAAAAATTAAATGTAACACATGG-AAAAGACAAAATTACGACACAG 239 consensus_5075#2 ATCCTAAAACCAAACAAAAATTAAATGTAACCCATGG-AAAAGACAAAATTGGGACCCAG 95 consensus_5075#0 ATCCTAAAACCAAACAAAAATTAAATGTA-CACATGGTAAAAGACAAAATTACGACACAG 67 ***************************** * ***** ************* *** *** consensus_5075#1 CCCCGGCACCACAACCGGCAAAAGTTTAAATCGATACAACATAAAAAGGTGAAATAAAAC 299 consensus_5075#2 CCCCGGCATCCCAACCGGCAAAAGTTTAAATCGATTCAACATAAAAAGGGGAAATAAAAC 155 consensus_5075#0 CCCCGGCACCACAACCGGCAAAAGTTTAAATCGATACAACATAAAAAGGTGAAATAAAAC 127 ******** * ************************ ************* ********** consensus_5075#1 AGCATATACACGGTGCAATATACACGTAACT-CGGATCTAGTAATGTGT-CTCTAAGCAT 357 consensus_5075#2 AGCATATACCCGGGGCAATATACCCGTAACT-CGGA------------------------ 190 consensus_5075#0 AGCATATACACGGTGCAATATACACGTAACTACGGATCTAGTAATGTGTACTCTAAGCAT 187 ********* *** ********* ******* **** consensus_5075#1 AAATGTACGAAAGCAGAACATTGAGGAAATTTATTTTACCGT-TAAAATTATTCAGTCAG 416 consensus_5075#2 ------------------------------------------------------------ consensus_5075#0 AAATGTACGAAAGCAGAACATTGAGGAAATTTATTTTACCGGGTAAAATTATTCAGTCAG 247 consensus_5075#1 TAAACGCTAACAGCGCCACATAACCGACCGATACACCAATATGATTGAAA-AGTATTGAG 475 consensus_5075#2 ------------------------------------------------------------ consensus_5075#0 TAAACGCAAACAGCGCCACATAAC-GACCGATACACCAATATGATTGCCCCAGTATTGAG 306 consensus_5075#1 -CAGATTATGCTAAATGATATTT-AACGTAA-GATACATGATAAAACCGGGAGT-TACAC 531 consensus_5075#2 ------------------------------------------------------------ consensus_5075#0 GCCGATTATGCTAAATGATATNNTAACGTANAGATACATGATAAAACCGGGAGTATATAC 366 consensus_5075#1 AGCTCTTGCAATTTT--GCGTATTT------CAGTTTTGTTTATATC---TTTTACCTGG 580 consensus_5075#2 ------------------------------------------------------------ consensus_5075#0 AGCTCTTGCAATTATAAGCGTATATTCAGANNANNNGTATTAATATACTATTATACCTGG 426 consensus_5075#1 TTACAAACATTTTTT-TTACAAACACGTTAAGTT--CGTATGT-TGCTCACGGTTTT--- 633 consensus_5075#2 ------------------------------------------------------------ consensus_5075#0 TTACNAACATATTNTACTACAAACACGTTAAGTATACGTATGTATGCTCACAGGTTTTAC 486 consensus_5075#1 -CCTTCTATTCCT-GAGTTTCTTATT-ACCACGTGC-AATCAATATAATCACTTTCTAAT 689 consensus_5075#2 ------------------------------------------------------------ consensus_5075#0 CCTATCTATTCCTCGAGTTTCTTATTTACCACGTGCCAAATCACATAATAAATCACTA-T 545 consensus_5075#1 ATTTCATTTATTCCCTC------TTCCCTAGAATCAATGCTATGTTGTAGAGACTAATGC 743 consensus_5075#2 ------------------------------------------------------------ consensus_5075#0 ATCTAACATATTTCCANATNTATTCCCCTCTTACCCTAGCACATTCACATNGCCTAATGT 605 consensus_5075#1 TAATAATATAATC-TTCTATGTTAGCCACATA-CGTAGTGCATGAAACATTTTATAAGAT 801 consensus_5075#2 ------------------------------------------------------------ consensus_5075#0 TA-CGCTACAGCAACCNTAAATNGGCCTCAAAACTTAACATACTTAAAANCCCTNTCCCT 664 consensus_5075#1 ACTGTTATATTTTAGACAATGGGTTTCGTTTGTTTTGTTTTACAATGTTGATCAATTGAT 861 consensus_5075#2 ------------------------------------------------------------ consensus_5075#0 AATGGTNTAAAN-AGACCCACAACCAAATTAAAACCGGCTAAAAGTG--GNCCANTTGAA 721 consensus_5075#1 TTGCCTTTGGGTTTAT--TTATTTAATTTGTCAATAAATGTTATATTATGTGCAAGCTT- 918 consensus_5075#2 ------------------------------------------------------------ consensus_5075#0 AAAACCCCCAATTNATGACANNATCNCACGCCACTNACNCTGGGTCAATNAGTTNACTNA 781 consensus_5075#1 CAAAAACAAAAAAAAAAAAACGCCAAATGTG----------------------------- 949 consensus_5075#2 ------------------------------------------------------------ consensus_5075#0 TCCGCACAACCCAACNCAACCGGGGGATATACACCCGGACATCGGGCNTNACACGGGTCA 841 consensus_5075#1 ------------------------------------------------------------ consensus_5075#2 ------------------------------------------------------------ consensus_5075#0 GCNCCNAACCACCAGNGGATCTGGAATCCCAAANCAACTGGCACAATATAGGCCCCNCTA 901 consensus_5075#1 ------------------------------------------------------------ consensus_5075#2 ------------------------------------------------------------ consensus_5075#0 TCTGGCGGCTTGNCAAACTTCAATATCCAAAANNCTCAGGACACACACAAACTGATTGTA 961 consensus_5075#1 ---- consensus_5075#2 ---- consensus_5075#0 CNAC 965 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||