cluster # 5075

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Anopheles gambiae
cluster # 5075 cluster # 5075 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5075#0 length = 965 sequences # 1

consensus_5075#1 length = 949 sequences # 2
consensus_5075#2 length = 190 sequences # 1

consensusID : consensus_5075#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 965
fasta sequence

                              [CGCGGTTTATCCTAAAACCAAACAAAAATTAAATGTACACATGGTAAAAGACAAAATTACGACACAGCCCCGGCACCACAACCGGCAAAAGTTTAAATCGATACAACATAAAAAGGTGAAATAAAACAGCATATACACGGTGCAATATACACGTAACTACGGATCTAGTAATGTGTACTCTAAGCATAAATGTACGAAAGCAGAACATTGAGGAAATTTATTTTACCGGGTAAAATTATTCAGTCAGTAAACGCAAACAGCGCCACATAACGACCGATACACCAATATGATTGCCCCAGTATTGAGGCCGATTATGCTAAATGATATNNTAACGTANAGATACATGATAAAACCGGGAGTATATACAGCTCTTGCAATTATAAGCGTATATTCAGANNANNNGTATTAATATACTATTATACCTGGTTACNAACATATTNTACTACAAACACGTTAAGTATACGTATGTATGCTCACAGGTTTTACCCTATCTATTCCTCGAGTTTCTTATTTACCACGTGCCAAATCACATAATAAATCACTATATCTAACATATTTCCANATNTATTCCCCTCTTACCCTAGCACATTCACATNGCCTAATGTTACGCTACAGCAACCNTAAATNGGCCTCAAAACTTAACATACTTAAAANCCCTNTCCCTAATGGTNTAAANAGACCCACAACCAAATTAAAACCGGCTAAAAGTGGNCCANTTGAAAAAACCCCCAATTNATGACANNATCNCACGCCACTNACNCTGGGTCAATNAGTTNACTNATCCGCACAACCCAACNCAACCGGGGGATATACACCCGGACATCGGGCNTNACACGGGTCAGCNCCNAACCACCAGNGGATCTGGAATCCCAAANCAACTGGCACAATATAGGCCCCNCTATCTGGCGGCTTGNCAAACTTCAATATCCAAAANNCTCAGGACACACACAAACTGATTGTACNAC]

[+] EMBL AL692122             [CGCGGTTTATCCTAAAACCAAACAAAAATTAAATGTACACATGGTAAAAGACAAAATTACGACACAGCCCCGGCACCACAACCGGCAAAAGTTTAAATCGATACAACATAAAAAGGTGAAATAAAACAGCATATACACGGTGCAATATACACGTAACTACGGATCTAGTAATGTGTACTCTAAGCATAAATGTACGAAAGCAGAACATTGAGGAAATTTATTTTACCGGGTAAAATTATTCAGTCAGTAAACGCAAACAGCGCCACATAACGACCGATACACCAATATGATTGCCCCAGTATTGAGGCCGATTATGCTAAATGATATNNTAACGTANAGATACATGATAAAACCGGGAGTATATACAGCTCTTGCAATTATAAGCGTATATTCAGANNANNNGTATTAATATACTATTATACCTGGTTACNAACATATTNTACTACAAACACGTTAAGTATACGTATGTATGCTCACAGGTTTTACCCTATCTATTCCTCGAGTTTCTTATTTACCACGTGCCAAATCACATAATAAATCACTATATCTAACATATTTCCANATNTATTCCCCTCTTACCCTAGCACATTCACATNGCCTAATGTTACGCTACAGCAACCNTAAATNGGCCTCAAAACTTAACATACTTAAAANCCCTNTCCCTAATGGTNTAAANAGACCCACAACCAAATTAAAACCGGCTAAAAGTGGNCCANTTGAAAAAACCCCCAATTNATGACANNATCNCACGCCACTNACNCTGGGTCAATNAGTTNACTNATCCGCACAACCCAACNCAACCGGGGGATATACACCCGGACATCGGGCNTNACACGGGTCAGCNCCNAACCACCAGNGGATCTGGAATCCCAAANCAACTGGCACAATATAGGCCCCNCTATCTGGCGGCTTGNCAAACTTCAATATCCAAAANNCTCAGGACACACACAAACTGATTGTACNAC]




>consensus_5075#0
CGCGGTTTATCCTAAAACCAAACAAAAATTAAATGTACACATGGTAAAAGACAAAATTAC
GACACAGCCCCGGCACCACAACCGGCAAAAGTTTAAATCGATACAACATAAAAAGGTGAA
ATAAAACAGCATATACACGGTGCAATATACACGTAACTACGGATCTAGTAATGTGTACTC
TAAGCATAAATGTACGAAAGCAGAACATTGAGGAAATTTATTTTACCGGGTAAAATTATT
CAGTCAGTAAACGCAAACAGCGCCACATAACGACCGATACACCAATATGATTGCCCCAGT
ATTGAGGCCGATTATGCTAAATGATATNNTAACGTANAGATACATGATAAAACCGGGAGT
ATATACAGCTCTTGCAATTATAAGCGTATATTCAGANNANNNGTATTAATATACTATTAT
ACCTGGTTACNAACATATTNTACTACAAACACGTTAAGTATACGTATGTATGCTCACAGG
TTTTACCCTATCTATTCCTCGAGTTTCTTATTTACCACGTGCCAAATCACATAATAAATC
ACTATATCTAACATATTTCCANATNTATTCCCCTCTTACCCTAGCACATTCACATNGCCT
AATGTTACGCTACAGCAACCNTAAATNGGCCTCAAAACTTAACATACTTAAAANCCCTNT
CCCTAATGGTNTAAANAGACCCACAACCAAATTAAAACCGGCTAAAAGTGGNCCANTTGA
AAAAACCCCCAATTNATGACANNATCNCACGCCACTNACNCTGGGTCAATNAGTTNACTN
ATCCGCACAACCCAACNCAACCGGGGGATATACACCCGGACATCGGGCNTNACACGGGTC
AGCNCCNAACCACCAGNGGATCTGGAATCCCAAANCAACTGGCACAATATAGGCCCCNCT
ATCTGGCGGCTTGNCAAACTTCAATATCCAAAANNCTCAGGACACACACAAACTGATTGT
ACNAC

consensusID : consensus_5075#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 949
fasta sequence

                              [TACTGGTTTTCAATGGTCGTGTTAAAAAAACTTACGTGCGTTAA-ACTCAAACCAATAACTGTTTCAAACCGATGCTCCAATTGAACTTTAACAAACACAGGTTATATAATGCCGCAAGCAGTCGCGGAAGGTTTATTGTTAAAAATACACTCAAACACACTCTATTGTTACTCTTTATCTATCCTAAAACCAAACAAAAATTAAATGTAACACATGGAAAAGACAAAATTACGACACAGCCCCGGCACCACAACCGGCAAAAGTTTAAATCGATACAACATAAAAAGGTGAAATAAAACAGCATATACACGGTGCAATATACACGTAACTCGGATCTAGTAATGTGTCTCTAAGCATAAATGTACGAAAGCAGAACATTGAGGAAATTTATTTTACCGTTAAAATTATTCAGTCAGTAAACGCTAACAGCGCCACATAACCGACCGATACACCAATATGATTGAAAAGTATTGAGCAGATTATGCTAAATGATATTTAACGTAAGATACATGATAAAACCGGGAGTTACACAGCTCTTGCAATTTTGCGTATTTCAGTTTTGTTTATATCTTTTACCTGGTTACAAACATTTTTTTTACAAACACGTTAAGTTCGTATGTTGCTCACGGTTTTCCTTCTATTCCTGAGTTTCTTATTACCACGTGCAATCAATATAATCACTTTCTAATATTTCATTTATTCCCTCTTCCCTAGAATCAATGCTATGTTGTAGAGACTAATGCTAATAATATAATCTTCTATGTTAGCCACATACGTAGTGCAT-GAAACATTTTATAAGATACTGTTATATTTTAGACAATGGGTTTCGTTTGTTTTGTTTTACAATGTTGATCAATTGATTTGCCTTTGGGTTTATTTATTTAATTTGTCAATAAATGTTATATTATGTGCAAGCTTCAAAAACAAAAAAAAAAAAACGCCAAATGTG]

[-] EMBL CNS09NQR             [TACTGGTTTTCAATGGTCGTGTTAAAAAAACTTACGTGCGTTAA ACTCAAACCAATAACTGTTTCAAACCGATGCTCCAATTGAACTTTAACAAACACAGGTTATATAATGCCGCAAGCAGTCGCGGAAGGTTTATTGTTAAAAATACACTCAAACACACTCTATTGTTACTCTTTATCTATCCTAAAACCAAACAAAAATTAAATGTAACACATGGAAAAGACAAAATTACGACACAGCCCCGGCACCACAACCGGCAAAAGTTTAAATCGATACAACATAAAAAGGTGAAATAAAACAGCATATACACGGTGCAATATACACGTAACTCGGATCTAGTAATGTGTCTCTAAGCATAAATGTACGAAAGCAGAACATTGAGGAAATTTATTTTACCGTTAAAATTATTCAGTCAGTAAACGCTAACAGCGCCACATAACCGACCGATACACCAATATGATTGAAAAGTATTGAGCAGATTATGCTAAATGATATTTAACGTAAGATACATGATAAAACCGGGAGTTACACAGCTCTTGCAATTTTGCGTATTTCAGTTTTGTTTATATCTTTTACCTGGTTACAAACATTTTTTTTACAAACACGTTAAGTTCGTATGTTGCTCACGGTTTTCCTTCTATTCCTGAGTTTCTTATTACCACGTGCAATCAATATAATCACTTTCTAATATTTCATTTATTCCCTCTTCCCTAGAATCAATGCTATGTTGTAGAGACTAATGCTAATAATATAATCTTCTATGTTAGCCACATACGTAGTGCAT GAAACATTTTATAAGATACTGTTATATTTTAGACAATGGGTTTCGTTTGTTTTGTTTTACAATGTTGATCAATTGATTTGCCTTTGGGTTTATTTATTTAATTTGTCAATAAATGTTATATTAT                                         ]
[+] EMBL CNS09NQQ             [                    GTTAAAAACACTTACGTGCGTTAACACTCAAACCAATAACTGTTTCAAACCGATGCTCCAATTGAACTTTAACAAACACAGGTTATATAATGCCGCAAGCAGTCGCGGAAGGTTTATTGTTAAAAATACACTCAAACACACTCTATTGTTACTCTTTATCTATCCTAAAACCAAACAAAAATTAAATGTAACACATGGAAAAGACAAAATTACGACACAGCCCCGGCACCACAACCGGCAAAAGTTTAAATCGATACAACATAAAAAGGTGAAATAAAACAGCATATACACGGTGCAATATACACGTAACTCGGATCTAGTAATGTGTCTCTAAGCATAAATGTACGAAAGCAGAACATTGAGGAAATTTATTTTACCGTTAAAATTATTCAGTCAGTAAACGCTAACAGCGCCACATAACCGACCGATACACCAATATGATTGAAAAGTATTGAGCAGATTATGCTAAATGATATTTAACGTAAGATACATGATAAAACCGGGAGTTACACAGCTCTTGCAATTTTGCGTATTTCAGTTTTGTTTATATCTTTTACCTGGTTACAAACATTTTTTTTACAAACACGTTAAGTTCGTATGTTGCTCACGGTTTTCCTTCTATTCCTGAGTTTCTTATTACCACGTGCAATCAATATAATCACTTTCTAATATTTCATTTATTCCCTCTTCCCTAGAATCAATGCTATGTTGTAGAGACTAATGCTAATAATATAATCTTCTATGTTAGCCACATACGTAGTGCATGGAAACATTTTATAAGATACTGTTATATTTTAGACAATGGGTTTCGTTTGTTTTGTTTTACAATGTTGATCAATTGATTTGCCTTTGGGTTTATTTATTTAATTTGTCAATAAATGTTATATTATGTGCAAGCTTCAAAAACAAAAAAAAAAAAACGCCAAATGTG]




>consensus_5075#1
TACTGGTTTTCAATGGTCGTGTTAAAAAAACTTACGTGCGTTAAACTCAAACCAATAACT
GTTTCAAACCGATGCTCCAATTGAACTTTAACAAACACAGGTTATATAATGCCGCAAGCA
GTCGCGGAAGGTTTATTGTTAAAAATACACTCAAACACACTCTATTGTTACTCTTTATCT
ATCCTAAAACCAAACAAAAATTAAATGTAACACATGGAAAAGACAAAATTACGACACAGC
CCCGGCACCACAACCGGCAAAAGTTTAAATCGATACAACATAAAAAGGTGAAATAAAACA
GCATATACACGGTGCAATATACACGTAACTCGGATCTAGTAATGTGTCTCTAAGCATAAA
TGTACGAAAGCAGAACATTGAGGAAATTTATTTTACCGTTAAAATTATTCAGTCAGTAAA
CGCTAACAGCGCCACATAACCGACCGATACACCAATATGATTGAAAAGTATTGAGCAGAT
TATGCTAAATGATATTTAACGTAAGATACATGATAAAACCGGGAGTTACACAGCTCTTGC
AATTTTGCGTATTTCAGTTTTGTTTATATCTTTTACCTGGTTACAAACATTTTTTTTACA
AACACGTTAAGTTCGTATGTTGCTCACGGTTTTCCTTCTATTCCTGAGTTTCTTATTACC
ACGTGCAATCAATATAATCACTTTCTAATATTTCATTTATTCCCTCTTCCCTAGAATCAA
TGCTATGTTGTAGAGACTAATGCTAATAATATAATCTTCTATGTTAGCCACATACGTAGT
GCATGAAACATTTTATAAGATACTGTTATATTTTAGACAATGGGTTTCGTTTGTTTTGTT
TTACAATGTTGATCAATTGATTTGCCTTTGGGTTTATTTATTTAATTTGTCAATAAATGT
TATATTATGTGCAAGCTTCAAAAACAAAAAAAAAAAAACGCCAAATGTG

consensusID : consensus_5075#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 190
fasta sequence

                              [ATACCCTCCCCCCCCCTCTATTGTTACTCTTTATTTATCCTAAAACCAAACAAAAATTAAATGTAACCCATGGAAAAGACAAAATTGGGACCCAGCCCCGGCATCCCAACCGGCAAAAGTTTAAATCGATTCAACATAAAAAGGGGAAATAAAACAGCATATACCCGGGGCAATATACCCGTAACTCGGA]

[-] EMBL BM633910             [ATACCCTCCCCCCCCCTCTATTGTTACTCTTTATTTATCCTAAAACCAAACAAAAATTAAATGTAACCCATGGAAAAGACAAAATTGGGACCCAGCCCCGGCATCCCAACCGGCAAAAGTTTAAATCGATTCAACATAAAAAGGGGAAATAAAACAGCATATACCCGGGGCAATATACCCGTAACTCGGA]




>consensus_5075#2
ATACCCTCCCCCCCCCTCTATTGTTACTCTTTATTTATCCTAAAACCAAACAAAAATTAA
ATGTAACCCATGGAAAAGACAAAATTGGGACCCAGCCCCGGCATCCCAACCGGCAAAAGT
TTAAATCGATTCAACATAAAAAGGGGAAATAAAACAGCATATACCCGGGGCAATATACCC
GTAACTCGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5075#1      TACTGGTTTTCAATGGTCGTGTTAAAAAAACTTACGTGCGTTAAACTCAAACCAATAACT 60
consensus_5075#2      ------------------------------------------------------------
consensus_5075#0      ------------------------------------------------------------
                                                                                  

consensus_5075#1      GTTTCAAACCGATGCTCCAATTGAACTTTAACAAACACAGGTTATATAATGCCGCAAGCA 120
consensus_5075#2      ------------------------------------------------------------
consensus_5075#0      ------------------------------------------------------------
                                                                                  

consensus_5075#1      GTCGCGGAAGGTTTATTGTTAAAAATACACTCAAACACACTCTATTGTTACTCTTTATCT 180
consensus_5075#2      ------------------------ATACCCTCCCCCCCCCTCTATTGTTACTCTTTATTT 36
consensus_5075#0      ----------------------------------------------------CGCGGTTT 8
                                                                          *    * *

consensus_5075#1      ATCCTAAAACCAAACAAAAATTAAATGTAACACATGG-AAAAGACAAAATTACGACACAG 239
consensus_5075#2      ATCCTAAAACCAAACAAAAATTAAATGTAACCCATGG-AAAAGACAAAATTGGGACCCAG 95
consensus_5075#0      ATCCTAAAACCAAACAAAAATTAAATGTA-CACATGGTAAAAGACAAAATTACGACACAG 67
                      ***************************** * ***** *************  *** ***

consensus_5075#1      CCCCGGCACCACAACCGGCAAAAGTTTAAATCGATACAACATAAAAAGGTGAAATAAAAC 299
consensus_5075#2      CCCCGGCATCCCAACCGGCAAAAGTTTAAATCGATTCAACATAAAAAGGGGAAATAAAAC 155
consensus_5075#0      CCCCGGCACCACAACCGGCAAAAGTTTAAATCGATACAACATAAAAAGGTGAAATAAAAC 127
                      ******** * ************************ ************* **********

consensus_5075#1      AGCATATACACGGTGCAATATACACGTAACT-CGGATCTAGTAATGTGT-CTCTAAGCAT 357
consensus_5075#2      AGCATATACCCGGGGCAATATACCCGTAACT-CGGA------------------------ 190
consensus_5075#0      AGCATATACACGGTGCAATATACACGTAACTACGGATCTAGTAATGTGTACTCTAAGCAT 187
                      ********* *** ********* ******* ****                        

consensus_5075#1      AAATGTACGAAAGCAGAACATTGAGGAAATTTATTTTACCGT-TAAAATTATTCAGTCAG 416
consensus_5075#2      ------------------------------------------------------------
consensus_5075#0      AAATGTACGAAAGCAGAACATTGAGGAAATTTATTTTACCGGGTAAAATTATTCAGTCAG 247
                                                                                  

consensus_5075#1      TAAACGCTAACAGCGCCACATAACCGACCGATACACCAATATGATTGAAA-AGTATTGAG 475
consensus_5075#2      ------------------------------------------------------------
consensus_5075#0      TAAACGCAAACAGCGCCACATAAC-GACCGATACACCAATATGATTGCCCCAGTATTGAG 306
                                                                                  

consensus_5075#1      -CAGATTATGCTAAATGATATTT-AACGTAA-GATACATGATAAAACCGGGAGT-TACAC 531
consensus_5075#2      ------------------------------------------------------------
consensus_5075#0      GCCGATTATGCTAAATGATATNNTAACGTANAGATACATGATAAAACCGGGAGTATATAC 366
                                                                                  

consensus_5075#1      AGCTCTTGCAATTTT--GCGTATTT------CAGTTTTGTTTATATC---TTTTACCTGG 580
consensus_5075#2      ------------------------------------------------------------
consensus_5075#0      AGCTCTTGCAATTATAAGCGTATATTCAGANNANNNGTATTAATATACTATTATACCTGG 426
                                                                                  

consensus_5075#1      TTACAAACATTTTTT-TTACAAACACGTTAAGTT--CGTATGT-TGCTCACGGTTTT--- 633
consensus_5075#2      ------------------------------------------------------------
consensus_5075#0      TTACNAACATATTNTACTACAAACACGTTAAGTATACGTATGTATGCTCACAGGTTTTAC 486
                                                                                  

consensus_5075#1      -CCTTCTATTCCT-GAGTTTCTTATT-ACCACGTGC-AATCAATATAATCACTTTCTAAT 689
consensus_5075#2      ------------------------------------------------------------
consensus_5075#0      CCTATCTATTCCTCGAGTTTCTTATTTACCACGTGCCAAATCACATAATAAATCACTA-T 545
                                                                                  

consensus_5075#1      ATTTCATTTATTCCCTC------TTCCCTAGAATCAATGCTATGTTGTAGAGACTAATGC 743
consensus_5075#2      ------------------------------------------------------------
consensus_5075#0      ATCTAACATATTTCCANATNTATTCCCCTCTTACCCTAGCACATTCACATNGCCTAATGT 605
                                                                                  

consensus_5075#1      TAATAATATAATC-TTCTATGTTAGCCACATA-CGTAGTGCATGAAACATTTTATAAGAT 801
consensus_5075#2      ------------------------------------------------------------
consensus_5075#0      TA-CGCTACAGCAACCNTAAATNGGCCTCAAAACTTAACATACTTAAAANCCCTNTCCCT 664
                                                                                  

consensus_5075#1      ACTGTTATATTTTAGACAATGGGTTTCGTTTGTTTTGTTTTACAATGTTGATCAATTGAT 861
consensus_5075#2      ------------------------------------------------------------
consensus_5075#0      AATGGTNTAAAN-AGACCCACAACCAAATTAAAACCGGCTAAAAGTG--GNCCANTTGAA 721
                                                                                  

consensus_5075#1      TTGCCTTTGGGTTTAT--TTATTTAATTTGTCAATAAATGTTATATTATGTGCAAGCTT- 918
consensus_5075#2      ------------------------------------------------------------
consensus_5075#0      AAAACCCCCAATTNATGACANNATCNCACGCCACTNACNCTGGGTCAATNAGTTNACTNA 781
                                                                                  

consensus_5075#1      CAAAAACAAAAAAAAAAAAACGCCAAATGTG----------------------------- 949
consensus_5075#2      ------------------------------------------------------------
consensus_5075#0      TCCGCACAACCCAACNCAACCGGGGGATATACACCCGGACATCGGGCNTNACACGGGTCA 841
                                                                                  

consensus_5075#1      ------------------------------------------------------------
consensus_5075#2      ------------------------------------------------------------
consensus_5075#0      GCNCCNAACCACCAGNGGATCTGGAATCCCAAANCAACTGGCACAATATAGGCCCCNCTA 901
                                                                                  

consensus_5075#1      ------------------------------------------------------------
consensus_5075#2      ------------------------------------------------------------
consensus_5075#0      TCTGGCGGCTTGNCAAACTTCAATATCCAAAANNCTCAGGACACACACAAACTGATTGTA 961
                                                                                  

consensus_5075#1      ----
consensus_5075#2      ----
consensus_5075#0      CNAC 965