cluster # 5089

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Anopheles gambiae
cluster # 5089 cluster # 5089 Sequences # 4 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5089#0 length = 635 sequences # 1
consensus_5089#1 length = 609 sequences # 1

consensus_5089#2 length = 605 sequences # 1
consensus_5089#3 length = 395 sequences # 1

consensusID : consensus_5089#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 635
fasta sequence

                              [ACTAGTCATAGAGCTACGAACGCGCGTAGAGATAAGGGCCGAAAGCCACCCCCTTTGGCTACCCCACAACCACCACAACCACCACCAGAACAAATACACACATTTCACCGCAAACGATAGTGCAAACAAAAAGAAAAAATAACCGTTGAAAAACCAAAAATCCTAACAAACCGAATATGATACTAAACCGGGAGAAAGTAAAGAGTAGTTAAGCTTTTAGGTTTTGCCCATTGTTGCGTGTGACTGTTCGGTTCGGCATTTTGCATATATGTGTGTGTGTATGTGTACCTCCCCCCCATATAAATGTGTAGTGTATTGGAACAAAGGGGAAAGGGGAAGTGCAGTTCCAAAGCACGCAAGCAATCTCAATGATAGAATCTAATCCAGCAAGGGACAATTACTAATGTAATTTCACGTTCACGTGCAACTCGATACCAAATAACCGTTTTTTTTTGCTGTGTGCTGTAACGATTATGTTTAAGGATTAGTGTATTGGTAGGGTTTTAAATTATGCTGGATGAGTGCCATTGGTTTTTGCTTGGGAACGGTTAAATTATGTATGCTTTTTCTATAATTAATTTACTCCTCAAACTTATCACATTCAAACCAAACAAACGCTCGCGAAGGGCTTCAAC]

[+] EMBL BX627212             [ACTAGTCATAGAGCTACGAACGCGCGTAGAGATAAGGGCCGAAAGCCACCCCCTTTGGCTACCCCACAACCACCACAACCACCACCAGAACAAATACACACATTTCACCGCAAACGATAGTGCAAACAAAAAGAAAAAATAACCGTTGAAAAACCAAAAATCCTAACAAACCGAATATGATACTAAACCGGGAGAAAGTAAAGAGTAGTTAAGCTTTTAGGTTTTGCCCATTGTTGCGTGTGACTGTTCGGTTCGGCATTTTGCATATATGTGTGTGTGTATGTGTACCTCCCCCCCATATAAATGTGTAGTGTATTGGAACAAAGGGGAAAGGGGAAGTGCAGTTCCAAAGCACGCAAGCAATCTCAATGATAGAATCTAATCCAGCAAGGGACAATTACTAATGTAATTTCACGTTCACGTGCAACTCGATACCAAATAACCGTTTTTTTTTGCTGTGTGCTGTAACGATTATGTTTAAGGATTAGTGTATTGGTAGGGTTTTAAATTATGCTGGATGAGTGCCATTGGTTTTTGCTTGGGAACGGTTAAATTATGTATGCTTTTTCTATAATTAATTTACTCCTCAAACTTATCACATTCAAACCAAACAAACGCTCGCGAAGGGCTTCAAC]




>consensus_5089#0
ACTAGTCATAGAGCTACGAACGCGCGTAGAGATAAGGGCCGAAAGCCACCCCCTTTGGCT
ACCCCACAACCACCACAACCACCACCAGAACAAATACACACATTTCACCGCAAACGATAG
TGCAAACAAAAAGAAAAAATAACCGTTGAAAAACCAAAAATCCTAACAAACCGAATATGA
TACTAAACCGGGAGAAAGTAAAGAGTAGTTAAGCTTTTAGGTTTTGCCCATTGTTGCGTG
TGACTGTTCGGTTCGGCATTTTGCATATATGTGTGTGTGTATGTGTACCTCCCCCCCATA
TAAATGTGTAGTGTATTGGAACAAAGGGGAAAGGGGAAGTGCAGTTCCAAAGCACGCAAG
CAATCTCAATGATAGAATCTAATCCAGCAAGGGACAATTACTAATGTAATTTCACGTTCA
CGTGCAACTCGATACCAAATAACCGTTTTTTTTTGCTGTGTGCTGTAACGATTATGTTTA
AGGATTAGTGTATTGGTAGGGTTTTAAATTATGCTGGATGAGTGCCATTGGTTTTTGCTT
GGGAACGGTTAAATTATGTATGCTTTTTCTATAATTAATTTACTCCTCAAACTTATCACA
TTCAAACCAAACAAACGCTCGCGAAGGGCTTCAAC

consensusID : consensus_5089#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 609
fasta sequence

                              [CAGATCCCCCGAGGTTAAAACAAAAATCTAACAAACCGAATATGATACTAAACCGGGAGAAAGTAAAGAGTAGTTAAGCTTTTAGGTTTTGCCCATTGTTGCGTGTAGACTGTTCGGTTCGGCATTTGCATATATGTGTGTGTGTATGTGTACCTCCCCCCCATATAAATGTGTAGTGTATTGGAACAAAGGGGAACAGGGGAAGTGCAGTTCCAAAGCACGCAAGCAATCTCAATGATAGAATCTAATCCAGCAGGGACAATTACTAATGTAATTTCACGTTCACGTGCAACTCGATACCAAATAACCGTCTCACTCANCTCTGCTGTGTGCTGTAACGATTATGTNTAAGGATTAGNTGTATTCGGTNANGGGTCTTTAAATTATGCTGGCATGAGTGCCATCTGGCTCCNCCTGCTTGGGAACGGTTAACATTATCGTATGCTCTATTCCTATAATTCACATTTACTCCTCAAACTTATCACCATTCAAACCAAACAAACGCTACGCGACGGGCTTCAACTCATCTTAAACCCTGGTCGCGCNAGCAATCTGGTATCACGAACAATTAACAAACCTATAAGCANAAAACAGAGTGTAACAGCAGTG]

[+] EMBL AL692487             [CAGATCCCCCGAGGTTAAAACAAAAATCTAACAAACCGAATATGATACTAAACCGGGAGAAAGTAAAGAGTAGTTAAGCTTTTAGGTTTTGCCCATTGTTGCGTGTAGACTGTTCGGTTCGGCATTTGCATATATGTGTGTGTGTATGTGTACCTCCCCCCCATATAAATGTGTAGTGTATTGGAACAAAGGGGAACAGGGGAAGTGCAGTTCCAAAGCACGCAAGCAATCTCAATGATAGAATCTAATCCAGCAGGGACAATTACTAATGTAATTTCACGTTCACGTGCAACTCGATACCAAATAACCGTCTCACTCANCTCTGCTGTGTGCTGTAACGATTATGTNTAAGGATTAGNTGTATTCGGTNANGGGTCTTTAAATTATGCTGGCATGAGTGCCATCTGGCTCCNCCTGCTTGGGAACGGTTAACATTATCGTATGCTCTATTCCTATAATTCACATTTACTCCTCAAACTTATCACCATTCAAACCAAACAAACGCTACGCGACGGGCTTCAACTCATCTTAAACCCTGGTCGCGCNAGCAATCTGGTATCACGAACAATTAACAAACCTATAAGCANAAAACAGAGTGTAACAGCAGTG]




>consensus_5089#1
CAGATCCCCCGAGGTTAAAACAAAAATCTAACAAACCGAATATGATACTAAACCGGGAGA
AAGTAAAGAGTAGTTAAGCTTTTAGGTTTTGCCCATTGTTGCGTGTAGACTGTTCGGTTC
GGCATTTGCATATATGTGTGTGTGTATGTGTACCTCCCCCCCATATAAATGTGTAGTGTA
TTGGAACAAAGGGGAACAGGGGAAGTGCAGTTCCAAAGCACGCAAGCAATCTCAATGATA
GAATCTAATCCAGCAGGGACAATTACTAATGTAATTTCACGTTCACGTGCAACTCGATAC
CAAATAACCGTCTCACTCANCTCTGCTGTGTGCTGTAACGATTATGTNTAAGGATTAGNT
GTATTCGGTNANGGGTCTTTAAATTATGCTGGCATGAGTGCCATCTGGCTCCNCCTGCTT
GGGAACGGTTAACATTATCGTATGCTCTATTCCTATAATTCACATTTACTCCTCAAACTT
ATCACCATTCAAACCAAACAAACGCTACGCGACGGGCTTCAACTCATCTTAAACCCTGGT
CGCGCNAGCAATCTGGTATCACGAACAATTAACAAACCTATAAGCANAAAACAGAGTGTA
ACAGCAGTG

consensusID : consensus_5089#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 605
fasta sequence

                              [CTTATGTTTAAGCATTATTGTATAGTTGGTTGGTAGGGATTTAGATTATGCTGTATGAGTGCCCATTGGTTTCTGCTTGGGGACGGTTCAAATTATGCTTTATTTTCCATTAAATTAATATATTCCTCAAACTTATCACATTCAAACCAAACCAACGCTCGCGAAGGGCTTCAACTATATTAAACCTGTCGGAAGAATCTGGTTAGAAAATTGAAAACCTATAAGCAAAACATAGTGTAATAGCAGCGCATACTAAACAGAAGAAGATACAGTAAATAGACCTCACTCTAATAGGATTGTCTTCTAAAAGCAAATCCTGTTGGCCGTGTTGGAACGACAGAGAAGTGAGTGAGAATTTCCCTCATAAAAAAAGTTATTACTATCCCACACATACACTAAAAAAGCGAAAATGGATGAATCTCGTGCAAATAATCCAAATGAAAAGCAAGCTTGAAGCGAGAGCGCATTGCATTGCTCAACTAACCGCAGGGAGAAAAGGGAGTCGAAAAAAAGGGGCAGAGGCGAGGAAAACAAAAGGGGAAAATGGAAAACAAAAACCTGGGAAGGCAGAAATACATGTTACAGAATATTTTAATCACCAAAAA]

[-] EMBL CNS08OWH             [CTTATGTTTAAGCATTATTGTATAGTTGGTTGGTAGGGATTTAGATTATGCTGTATGAGTGCCCATTGGTTTCTGCTTGGGGACGGTTCAAATTATGCTTTATTTTCCATTAAATTAATATATTCCTCAAACTTATCACATTCAAACCAAACCAACGCTCGCGAAGGGCTTCAACTATATTAAACCTGTCGGAAGAATCTGGTTAGAAAATTGAAAACCTATAAGCAAAACATAGTGTAATAGCAGCGCATACTAAACAGAAGAAGATACAGTAAATAGACCTCACTCTAATAGGATTGTCTTCTAAAAGCAAATCCTGTTGGCCGTGTTGGAACGACAGAGAAGTGAGTGAGAATTTCCCTCATAAAAAAAGTTATTACTATCCCACACATACACTAAAAAAGCGAAAATGGATGAATCTCGTGCAAATAATCCAAATGAAAAGCAAGCTTGAAGCGAGAGCGCATTGCATTGCTCAACTAACCGCAGGGAGAAAAGGGAGTCGAAAAAAAGGGGCAGAGGCGAGGAAAACAAAAGGGGAAAATGGAAAACAAAAACCTGGGAAGGCAGAAATACATGTTACAGAATATTTTAATCACCAAAAA]




>consensus_5089#2
CTTATGTTTAAGCATTATTGTATAGTTGGTTGGTAGGGATTTAGATTATGCTGTATGAGT
GCCCATTGGTTTCTGCTTGGGGACGGTTCAAATTATGCTTTATTTTCCATTAAATTAATA
TATTCCTCAAACTTATCACATTCAAACCAAACCAACGCTCGCGAAGGGCTTCAACTATAT
TAAACCTGTCGGAAGAATCTGGTTAGAAAATTGAAAACCTATAAGCAAAACATAGTGTAA
TAGCAGCGCATACTAAACAGAAGAAGATACAGTAAATAGACCTCACTCTAATAGGATTGT
CTTCTAAAAGCAAATCCTGTTGGCCGTGTTGGAACGACAGAGAAGTGAGTGAGAATTTCC
CTCATAAAAAAAGTTATTACTATCCCACACATACACTAAAAAAGCGAAAATGGATGAATC
TCGTGCAAATAATCCAAATGAAAAGCAAGCTTGAAGCGAGAGCGCATTGCATTGCTCAAC
TAACCGCAGGGAGAAAAGGGAGTCGAAAAAAAGGGGCAGAGGCGAGGAAAACAAAAGGGG
AAAATGGAAAACAAAAACCTGGGAAGGCAGAAATACATGTTACAGAATATTTTAATCACC
AAAAA

consensusID : consensus_5089#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 395
fasta sequence

                              [TGTGCGGACAACAAATAAGCAGGATAGGAAGAAGAAGAAGAAGAAAACTTGTGAATGCAACCATGGTACTAGTCATAGAGCTACGAACGCGCGTAGAGATAAGGGCGAAACCACCCACTTTGGCTACCCCACAACCACCACCAAAACGAAACAAACACACACATTTCACCGCAAACGATAGTGCAAAACAAAAAAAGAAAAGAAAAAATAACCGTTTAAAAAACCAAAAATCCTAACAAGCCGAATATGATACTAAACCCCGGAGTTTGTTAAGAGTAGTTAAGCTTTTAGGTTTTGTCCATTGTTGCGTGTGACTGTTCGGTTCGGCATTTTGCATATATGTGTGTGTGTATGTGTACCTCCCCCCCATATAAATGCGTAGTGTAATGGAACAA]

[+] EMBL CNS08OWG             [TGTGCGGACAACAAATAAGCAGGATAGGAAGAAGAAGAAGAAGAAAACTTGTGAATGCAACCATGGTACTAGTCATAGAGCTACGAACGCGCGTAGAGATAAGGGCGAAACCACCCACTTTGGCTACCCCACAACCACCACCAAAACGAAACAAACACACACATTTCACCGCAAACGATAGTGCAAAACAAAAAAAGAAAAGAAAAAATAACCGTTTAAAAAACCAAAAATCCTAACAAGCCGAATATGATACTAAACCCCGGAGTTTGTTAAGAGTAGTTAAGCTTTTAGGTTTTGTCCATTGTTGCGTGTGACTGTTCGGTTCGGCATTTTGCATATATGTGTGTGTGTATGTGTACCTCCCCCCCATATAAATGCGTAGTGTAATGGAACAA]




>consensus_5089#3
TGTGCGGACAACAAATAAGCAGGATAGGAAGAAGAAGAAGAAGAAAACTTGTGAATGCAA
CCATGGTACTAGTCATAGAGCTACGAACGCGCGTAGAGATAAGGGCGAAACCACCCACTT
TGGCTACCCCACAACCACCACCAAAACGAAACAAACACACACATTTCACCGCAAACGATA
GTGCAAAACAAAAAAAGAAAAGAAAAAATAACCGTTTAAAAAACCAAAAATCCTAACAAG
CCGAATATGATACTAAACCCCGGAGTTTGTTAAGAGTAGTTAAGCTTTTAGGTTTTGTCC
ATTGTTGCGTGTGACTGTTCGGTTCGGCATTTTGCATATATGTGTGTGTGTATGTGTACC
TCCCCCCCATATAAATGCGTAGTGTAATGGAACAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5089#0      ------------------------------------------------------------
consensus_5089#3      TGTGCGGACAACAAATAAGCAGGATAGGAAGAAGAAGAAGAAGAAAACTTGTGAATGCAA 60
consensus_5089#1      ------------------------------------------------------------
consensus_5089#2      -------CTTATGTTTAAGCATTATTGTATAGTTGGTTGGTAGGGATTTAGATTATGCTG 53
                                                                                  

consensus_5089#0      -------ACTAGTCA-TAGAGCTACGAACGCGCGTAGAGATAAGGGCCGAAAGCCACCCC 52
consensus_5089#3      CCATGGTACTAGTCA-TAGAGCTACGAACGCGCGTAGAGATAAGGGC--GAAACCACCCA 117
consensus_5089#1      ------------------------------------------------------------
consensus_5089#2      TATGAGTGCCCATTGGTTTCTGCTTGGGGACGGTTCAAATTATGCTTTATTTTCCATTAA 113
                                                                                  

consensus_5089#0      CTTTGGCTACCCCACAACCACCACAACCACCACCAGAACAAATACACACATTTCACCGCA 112
consensus_5089#3      CTTTGGCTACCCCACAACCACCACCAA----AACGAAACAAACACACACATTTCACCGCA 173
consensus_5089#1      ------------------------------------------------------------
consensus_5089#2      ATTAATATATTCCTCAAACTTATCACATTCAAACCAAACCAACGCTCGCGAAGGGCTTCA 173
                                                                                  

consensus_5089#0      AACGATAGTGCAAAC--------AAAAAGAAAAAATAACCGTT-GAAAAACCAAAAATCC 163
consensus_5089#3      AACGATAGTGCAAAACAAAAAAAGAAAAGAAAAAATAACCGTTTAAAAAACCAAAAATCC 233
consensus_5089#1      -------------------------------CAGATCCCCCGAGGTTAAAACAAAAATC- 28
consensus_5089#2      A-CTATATTAAACCTGTCGGAAGAATCTGGTTAGAAAATTGAAAACCTATAAGCAAAACA 232
                                                      * *             *     *** * 

consensus_5089#0      TAACAAACCGAATATG-ATACTAAACCG-GGAGAAAGTAAAGAGTAG---TTAAGCTTTT 218
consensus_5089#3      TAACAAGCCGAATATG-ATACTAAACCCCGGAGTTTGTTAAGAGTAG---TTAAGCTTTT 289
consensus_5089#1      TAACAAACCGAATATG-ATACTAAACCG-GGAGAAAGTAAAGAGTAG---TTAAGCTTTT 83
consensus_5089#2      TAGTGTAATAGCAGCGCATACTAAACAGAAGAAGATACAGTAAATAGACCTCACTCTAAT 292
                      **             * *********    **          * ***   * *  **  *

consensus_5089#0      AGGTTTTGCCCATTGTTGCGTGT-GACTGTTCGGTTCGGCATTTTGCATATATGTGTGTG 277
consensus_5089#3      AGGTTTTGTCCATTGTTGCGTGT-GACTGTTCGGTTCGGCATTTTGCATATATGTGTGTG 348
consensus_5089#1      AGGTTTTGCCCATTGTTGCGTGTAGACTGTTCGGTTCGGCATTT-GCATATATGTGTGTG 142
consensus_5089#2      AGGATTGTCTTCTAAAAGCAAAT-------CCTGTTGGCCGTGTTGGAACGACAGAGAAG 345
                      *** **      *    **   *        * *** * * * * * *   *       *

consensus_5089#0      TGTATGTGTACCTCCCCCCCATATAAATGTGTAGTGTATTGGAACAAAGGGGAA-AGGGG 336
consensus_5089#3      TGTATGTGTACCTCCCCCCCATATAAATGCGTAGTGTAATGGAACAA------------- 395
consensus_5089#1      TGTATGTGTACCTCCCCCCCATATAAATGTGTAGTGTATTGGAACAAAGGGGAACAGGGG 202
consensus_5089#2      TGAGTGAGAATTTCCCTCATAAAAAAAGTTATTACTATCCCACACATACACTAAAAAAGC 405
                      **  ** * *  **** *  * * ***    *           ***              

consensus_5089#0      AAGTGCAGTTCCAAAGCACGCAAGCAATCTCAATGATAGAATCTAATCCAGCAAGGGACA 396
consensus_5089#3      ------------------------------------------------------------
consensus_5089#1      AAGTGCAGTTCCAAAGCACGCAAGCAATCTCAATGATAGAATCTAATCCAGCA-GGGACA 261
consensus_5089#2      GAAAATGGATGAATCTCGTGCAAATAATCCAAATGAAAAGCAAGCTTGAAGCGAGAGCGC 465
                                                                                  

consensus_5089#0      ATTACTAATGTAATTTCACGTTCACGTGCAACTCGATACCAAATAACCGTTTT-----TT 451
consensus_5089#3      ------------------------------------------------------------
consensus_5089#1      ATTACTAATGTAATTTCACGTTCACGTGCAACTCGATACCAAATAACCGTCTCACTCANC 321
consensus_5089#2      ATTGCATTGCTCAACTAACCGCAGGGAGAAAAGGGAGTCGAAAAAAAGGGGCAGAGGCGA 525
                                                                                  

consensus_5089#0      TTTGCTGTGTGCTGTAACGATTATGTTTAAGGATTAGTGTATTGGTAGGGTTTTAAATTA 511
consensus_5089#3      ------------------------------------------------------------
consensus_5089#1      TCTGCTGTGTGCTGTAACGATTATGTNTAAGGATTAGNTGTATTCGGTNANGGGTCTTTA 381
consensus_5089#2      GGAAAACAAAAGGGGAAAATGGAAAACAAAAACCTGGGAAGGCAGAAATACATGTTACAG 585
                                                                                  

consensus_5089#0      TGCTGGATGAGTGCCATTGGTTTTTGCTTGGGAACGGTTAAATTATGTATGCTTTTTCTA 571
consensus_5089#3      ------------------------------------------------------------
consensus_5089#1      AATTATGCTGGCATGAGTGCCATCTGGCTCCNCCTGCTTGGGAACGGTTAACATTATCGT 441
consensus_5089#2      AATATTTTAATCACCAAAAA---------------------------------------- 605
                                                                                  

consensus_5089#0      TAATTAATTTACTCCTCAAACTTATCACATTCAAACCAAACAAACGCTCGCGAAGGGCTT 631
consensus_5089#3      ------------------------------------------------------------
consensus_5089#1      ATGCTCTATTCCTATAATTCACATTTACTCCTCAAACTTATCACCATTCAAACCAAACAA 501
consensus_5089#2      ------------------------------------------------------------
                                                                                  

consensus_5089#0      CAAC-------------------------------------------------------- 635
consensus_5089#3      ------------------------------------------------------------
consensus_5089#1      ACGCTACGCGACGGGCTTCAACTCATCTTAAACCCTGGTCGCGCNAGCAATCTGGTATCA 561
consensus_5089#2      ------------------------------------------------------------
                                                                                  

consensus_5089#0      ------------------------------------------------
consensus_5089#3      ------------------------------------------------
consensus_5089#1      CGAACAATTAACAAACCTATAAGCANAAAACAGAGTGTAACAGCAGTG 609
consensus_5089#2      ------------------------------------------------