These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5090#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1080 fasta sequence [TTGGTACTAGAAAGTTTGCATAGAACAAAAGTTAGAAAGTGATAAGCAAAATGAAGAGCAAAACAAAAAAACTGTCGAATGAATGAAATTAACGACTTTTGGGGGGAGGAAGTGTAAACCAGAAAAGAAGGTAATAGGCAAACCCAATGATATTAATTAGAAGAAGAAAGGCATGGCACAAACAAGTAGATAAGATGGACAAAAACTAAAACAGATGAAAAAGACAACAACAAAAAGAGTATCCTTCTCGGTTTCCATCTACGGAAGAAGGCTTCATTCGGCTTCAAACCAGTGAATGTACAAGATAAGACATACTAAACCCAGTGAAAAGGACCCGTGCTCTCCGAAAAGTGTGTCCAGTAAAGCGATAGGTTCGTTTGTACAAGAAAAACGGTCATGTAGCGACGAGACGTGTGTATCAGTTCGGTTTTGGTTTTCTCGATCCTGTTTATCCTAAGCGATTTGTTAGATTATGCTTTCTCTTGTACAGACTGTTATGAAATATGTTATGGTAGCTTTAAGCGTTTTTTTTCTTTTGTTTTTTCTGTTTTTGTTTGTTTTTTCATATTTTCTTAGCTTTGCTGTTTCTAACTGATACATAGAGATTATTTTCCCACTGTTACTTTTTCCTTTTTTGACCATTTGGTAGATTTCGCAGTAATACAGTTATGCTTTCGTTAACCTTAACTTAATTCAATCGCCTAGAATGCGTCTTTGGAATGCGTTACCCAAAATCTGAATCACATAATAAAAAAAACCCAATTTGTCTCCTCAGAAAAACAAACGAAACAAAAAGACATTTTTTATCACAGCACTATCCGGCAACGTAAATATTAAAATAAGTCTTAACAATGTCAAACTCCTCACAGTAAAAAAGTGAATGCTATTGCACACGTACATACACACTCTCACATACACAGTGTCAACAAACGTTCACAATACATACACACATGAAAACGACTTTTCAAAGAACAGCGGTACCCTTTTAGAACGACAGAAAACGTTAATAACAAAACATTTAAGAAAAACACGCTTTCAAAATAATGTCAACGTAAATGGGGGAGATAGTAAGTGCGATGC] [+] EMBL BX621847 [TTGGTACTAGAAAGTTTGCATAGAACAAAAGTTAGAAAGTGATAAGCAAAATGAAGAGCAAAACAAAAAAACTGTCGAATGAATGAAATTAACGACTTTTGGGGGGAGGAAGTGTAAACCAGAAAAGAAGGTAATAGGCAAACCCAATGATATTAATTAGAAGAAGAAAGGCATGGCACAAACAAGTAGATAAGATGGACAAAAACTAAAACAGATGAAAAAGACAACAACAAAAAGAGTATCCTTCTCGGTTTCCATCTACGGAAGAAGGCTTCATTCGGCTTCAAACCAGTGAATGTACAAGATAAGACATACTAAACCCAGTGAAAAGGACCCGTGCTCTCCGAAAAGTGTGTCCAGTAAAGCGATAGGTTCGTTTGTACAAGAAAAACGGTCATGTAGCGACGAGACGTGTGTATCAGTTCGGTTTTGGTTTTCTCGATCCTGTTTATCCTAAGCGATTTGTTAGATTATGCTTTCTCTTGTACAGACTGTTATGAAATATGTTATGGTAGCTTTAAGCGTTTTTTTTCTTTTGTTTTTTCTGTTTTTGTTTGTTTTTTCATATTTTCTTAGCTTTGCTGTTTCTAACTGATACATAGAGATTATTTTCCCACTGTTACTTTTTCCTTTTTTGACCATTTG ] [+] EMBL BX613329 [ CGGTCATGTAGCGACGAGACGTGGGTATCAGTTCGGTTTTGGTTTTCTCGATCCTGTTTATCCTAAGCGATTTGTTAGATTATGCTTTCTCTTGTATAGACTGTTATGAAATATGTTATGGTAGCTTTAAGCGTTTTTTTT ] [+] EMBL BX610258 [ TAAGCGATTTGTTAGATTATGCTTTCTCTTGTACAGACTGTTATGAAATATGTTATGGTAGCTTTAAGCGTTTTTTTTCTTTTGTTTTTTCTGTTTTTGTTTGTTTTTTCATATTTTCTTAGCTTTGCTGTTTCTAACTGATACATAGAGATTATTTTCCCACTGTTACTTTTTCCTTTTTTGACCATTTGGTAGATTTCGCAGTAATACAGTTATGCTTTCGTTAACCTTAACTTAATTCAATCGCCTAGAATGCGTCTTTGGAATGCGTTACCCAAAATCTGAATCACATAATAAAAAAAACCCAATTTGTCTCCTCAGAAAAACAAACGAAACAAAAAGACATTTTTTATCACAGCACTATCCGGCAACGTAAATATTAAAATAAGTCTTAACAATGTCAAACTCCTCACAGTAAAAAAGTGAATGCTATTGCACACGTACATACACACTCTCACATACACAGTGTCAACAAACGTTCACAATACATACACACATGAAAACGACTTTTCAAAGAACAGCGGTACCCTTTTAGAACGACAGAAAACGTTAATAACAAAACATTTAAGAAAAACACGCTTTCAAAATAATGTCAACGTAAATGGGGGAGATAGTAAGTGCGATGC] consensusID : consensus_5090#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 804 fasta sequence [CGCGGTTACTGTTACTATTNTCCTNTTTTNNTACCATTTGGTAGATTTCGCAGTAATACAGTTATGCTTTCGTGNAACCTTAACTTAATTCAATCGCCTAGAATGCGTACTTTCGAATGCGTTACCCAAAAACTGAATCACATAATAAAAAAAACCCAATTTGTACTCCTCAGAAAAACAAACGAAACAAAAAGACCTTTATTTATACACAGGCACATATCCGGCAACGTAANNTATTAAGAGATAAACGTCTTACACAACTGTCCAACTCCTCACAGGTAACACACNAGTGAACTGCGTATTGCANCCACGTACAATACAACGAACCCTCAACCATTACACACCACGTTGGTACCAAAACAAACACNTTACAACCAAAATTACCATAAACACCAACCATTGAACANACAACCGACATATTCATACCACAACGACAAACCAGCCTGGGTAAACCCCCCTCATCTATTCANAACACCGTAACCNCGCTAGACCCACCGTNCTCACACTNNANACACCAANACAGGCNACATATATAACACGGGAACAGAACACACACCAACGCGGACCTTATATCTACCANCACACANACTTCNAACACTCGGGTTACCACCACCTGGCTACNCANCAANNTGNTGGTGGANGGGGCCACAGACATCAAAGGTANCAACGCTTNGGACCNCGNANTTGGCGGNACATTAACANACCANGCACCTCNAGACGCTTACAAACAACNCAAACACCGACCACAACANAGACCAACATAACANCTCAACCACACGGGGTNCANACANCAGCCAAACTTAA] [+] EMBL AL692529 [CGCGGTTACTGTTACTATTNTCCTNTTTTNNTACCATTTGGTAGATTTCGCAGTAATACAGTTATGCTTTCGTGNAACCTTAACTTAATTCAATCGCCTAGAATGCGTACTTTCGAATGCGTTACCCAAAAACTGAATCACATAATAAAAAAAACCCAATTTGTACTCCTCAGAAAAACAAACGAAACAAAAAGACCTTTATTTATACACAGGCACATATCCGGCAACGTAANNTATTAAGAGATAAACGTCTTACACAACTGTCCAACTCCTCACAGGTAACACACNAGTGAACTGCGTATTGCANCCACGTACAATACAACGAACCCTCAACCATTACACACCACGTTGGTACCAAAACAAACACNTTACAACCAAAATTACCATAAACACCAACCATTGAACANACAACCGACATATTCATACCACAACGACAAACCAGCCTGGGTAAACCCCCCTCATCTATTCANAACACCGTAACCNCGCTAGACCCACCGTNCTCACACTNNANACACCAANACAGGCNACATATATAACACGGGAACAGAACACACACCAACGCGGACCTTATATCTACCANCACACANACTTCNAACACTCGGGTTACCACCACCTGGCTACNCANCAANNTGNTGGTGGANGGGGCCACAGACATCAAAGGTANCAACGCTTNGGACCNCGNANTTGGCGGNACATTAACANACCANGCACCTCNAGACGCTTACAAACAACNCAAACACCGACCACAACANAGACCAACATAACANCTCAACCACACGGGGTNCANACANCAGCCAAACTTAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5090#0 TTGGTACTAGAAAGTTTGCATAGAACAAAAGTTAGAAAGTGATAAGCAAAATGAAGAGCA 60 consensus_5090#1 ------------------------------------------------------------ consensus_5090#0 AAACAAAAAAACTGTCGAATGAATGAAATTAACGACTTTTGGGGGGAGGAAGTGTAAACC 120 consensus_5090#1 ------------------------------------------------------------ consensus_5090#0 AGAAAAGAAGGTAATAGGCAAACCCAATGATATTAATTAGAAGAAGAAAGGCATGGCACA 180 consensus_5090#1 --------------------------------------------------------CGCG 4 * * consensus_5090#0 AACAAGTAGATAAGATGGACAAAAACTAAAAC-AGATGAAAAAGACAACAACAAAAAGAG 239 consensus_5090#1 GTTA--CTGTTACTATTNTCCTNTTTTNNTACCATTTGGTAGATTTCGCAGTAATACAGT 62 * * ** ** * * ** * ** * * ** ** * consensus_5090#0 TATCCTTCTCGGTTTCCATCTACGGAAGAAGGCTTCATTCGGCTTCAAACCAGTGAATGT 299 consensus_5090#1 TATGCTT-TCGTGNAACCTTAACTTAATTCAATCGC-CTAGAATGCGTACTTTCGAATGC 120 *** *** *** * * ** ** * * * * * ** ***** consensus_5090#0 ACAAGATAAGACATACTAAACCCAGTGAAAAGGACCC-----GTGCTCTCC-GAAAAGTG 353 consensus_5090#1 GTTACCCAAAAACTGAATCACATAATAAAAAAAACCCAATTTGTACTCCTCAGAAAAACA 180 * ** * * ** * * **** **** ** *** * ***** consensus_5090#0 TGTCCAGTAAAGCGATAGGTTCGTTTGTACAAGAAAAACGGTCATGTAGCGACGAGACGT 413 consensus_5090#1 AACGAAACAAAAAGAC--CTTTATTTATACAC---AGGCACATATCCGGCAACGTAANNT 235 * *** ** ** *** **** * * ** ** *** * * consensus_5090#0 GTGTATCAGTTCGGTTTTGGTTTTCTCGATCCTGTTTATCCTAAGCGATTTGTTAGATTA 473 consensus_5090#1 AT-TAAGAGATAAACGTCTTACACAACTGTCCAACTCCTCACAGGTAACACACNAG--TG 292 * ** ** * * * *** * ** * * * ** * consensus_5090#0 TGCTTTCTCTTGTACAGACTGTTATGAAATATGTTATGGTAGCTTTAAGCGTTTTTTTTC 533 consensus_5090#1 AACTGCGTATTGCAN------CCACGTACAATACAACGA-ACCCTCAACCATTACACACC 345 ** * *** * * * * ** * * * * * ** * ** * consensus_5090#0 TT-TTGTTTTTTCTGTTTTTGTTTGTTTTTTCATATTTTCTTAGCTTTGCTGTTTCTAAC 592 consensus_5090#1 ACGTTGGTACCAAAACAAACACNTTACAACCAAAATTACCATAAACACCAACCATTGAAC 405 *** * * * *** * ** * *** consensus_5090#0 TGATA-CATAGAGATTATTTTCCCACTGTTACTTTTTCCTTTTTTGACCATTTGGTAGAT 651 consensus_5090#1 ANACAACCGACATATTCATACCACAACGACAAACCAGCCTGGGTAAACCCCCCTCATCTA 465 * * * * * *** * * ** * * *** * *** consensus_5090#0 TTCGCAGTAATACAGTTATGCTTTCGTTAACCTTAACTTAATTCAATCGCCTAGAATGCG 711 consensus_5090#1 TTCANAACACCGTAACCNCGCTAGACCCACCGTNCTCACACTNNANACACCAANACAGG- 524 *** * * * *** * * * * * * * * ** * * * consensus_5090#0 TCTTTGGAATGCGTTACCCAAAATCTGAATCACATAATAAAAAAAACCCAATTTGTCTCC 771 consensus_5090#1 ----CNACATATATAACACGGGAACAGAA-CACACACCAACGCGGACCTTATATCTACCA 579 ** * ** * * * *** **** * ** *** ** * * * consensus_5090#0 TCAGAAAAACAAACGAAACAAAAAGACATTTTTTATCACAGCACTATCCGGCAACGTAAA 831 consensus_5090#1 NCACACANACTTCNAACACTCGGG-----TTACCACCACCTGGCTACNCANCAANNTGN- 633 ** * * ** * ** ** * *** *** * *** * consensus_5090#0 TATTAAAATAAGTCTTAACAATGTCAAACTCCTCACAGTAAAAAAGTGAATGCTATTGCA 891 consensus_5090#1 TGGTGGANGGGGCCACAG--ACATCAAA--------GGTANCAACGCTTNGGACCNCGNA 683 * * * * * * * ***** *** ** * * * * consensus_5090#0 CACGTACATACACACTCTCACATACACAGTGTCAACAAACGTTCACAATACATACACACA 951 consensus_5090#1 NTTGGCGGNACAT----TAACANACCANGCACCTCNAGACGCTTACAA-ACA-ACNCAAA 737 * *** * *** ** * * * *** * **** *** ** ** * consensus_5090#0 TGAAAACGACTTTTCAAAGAACAGCGGTACCCTTTTAGAACGACAGAAAACGTTAATAAC 1011 consensus_5090#1 CACCGACCACAA--CANAGACCAACATAACANCTC---AACCACACGGGGTNCANACANC 792 ** ** ** *** ** * ** * *** *** * * * consensus_5090#0 AAA-ACATTTAAGAAAAACACGCTTTCAAAATAATGTCAACGTAAATGGGGGAGATAGTA 1070 consensus_5090#1 AGCCAAACTTAA------------------------------------------------ 804 * * * **** consensus_5090#0 AGTGCGATGC 1080 consensus_5090#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||