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Anopheles gambiae
cluster # 5090 cluster # 5090       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5090#0 length = 1080 sequences # 3  
consensus_5090#1 length = 804 sequences # 1  

consensusID : consensus_5090#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1080
fasta sequence
                              [TTGGTACTAGAAAGTTTGCATAGAACAAAAGTTAGAAAGTGATAAGCAAAATGAAGAGCAAAACAAAAAAACTGTCGAATGAATGAAATTAACGACTTTTGGGGGGAGGAAGTGTAAACCAGAAAAGAAGGTAATAGGCAAACCCAATGATATTAATTAGAAGAAGAAAGGCATGGCACAAACAAGTAGATAAGATGGACAAAAACTAAAACAGATGAAAAAGACAACAACAAAAAGAGTATCCTTCTCGGTTTCCATCTACGGAAGAAGGCTTCATTCGGCTTCAAACCAGTGAATGTACAAGATAAGACATACTAAACCCAGTGAAAAGGACCCGTGCTCTCCGAAAAGTGTGTCCAGTAAAGCGATAGGTTCGTTTGTACAAGAAAAACGGTCATGTAGCGACGAGACGTGTGTATCAGTTCGGTTTTGGTTTTCTCGATCCTGTTTATCCTAAGCGATTTGTTAGATTATGCTTTCTCTTGTACAGACTGTTATGAAATATGTTATGGTAGCTTTAAGCGTTTTTTTTCTTTTGTTTTTTCTGTTTTTGTTTGTTTTTTCATATTTTCTTAGCTTTGCTGTTTCTAACTGATACATAGAGATTATTTTCCCACTGTTACTTTTTCCTTTTTTGACCATTTGGTAGATTTCGCAGTAATACAGTTATGCTTTCGTTAACCTTAACTTAATTCAATCGCCTAGAATGCGTCTTTGGAATGCGTTACCCAAAATCTGAATCACATAATAAAAAAAACCCAATTTGTCTCCTCAGAAAAACAAACGAAACAAAAAGACATTTTTTATCACAGCACTATCCGGCAACGTAAATATTAAAATAAGTCTTAACAATGTCAAACTCCTCACAGTAAAAAAGTGAATGCTATTGCACACGTACATACACACTCTCACATACACAGTGTCAACAAACGTTCACAATACATACACACATGAAAACGACTTTTCAAAGAACAGCGGTACCCTTTTAGAACGACAGAAAACGTTAATAACAAAACATTTAAGAAAAACACGCTTTCAAAATAATGTCAACGTAAATGGGGGAGATAGTAAGTGCGATGC]

[+] EMBL BX621847             [TTGGTACTAGAAAGTTTGCATAGAACAAAAGTTAGAAAGTGATAAGCAAAATGAAGAGCAAAACAAAAAAACTGTCGAATGAATGAAATTAACGACTTTTGGGGGGAGGAAGTGTAAACCAGAAAAGAAGGTAATAGGCAAACCCAATGATATTAATTAGAAGAAGAAAGGCATGGCACAAACAAGTAGATAAGATGGACAAAAACTAAAACAGATGAAAAAGACAACAACAAAAAGAGTATCCTTCTCGGTTTCCATCTACGGAAGAAGGCTTCATTCGGCTTCAAACCAGTGAATGTACAAGATAAGACATACTAAACCCAGTGAAAAGGACCCGTGCTCTCCGAAAAGTGTGTCCAGTAAAGCGATAGGTTCGTTTGTACAAGAAAAACGGTCATGTAGCGACGAGACGTGTGTATCAGTTCGGTTTTGGTTTTCTCGATCCTGTTTATCCTAAGCGATTTGTTAGATTATGCTTTCTCTTGTACAGACTGTTATGAAATATGTTATGGTAGCTTTAAGCGTTTTTTTTCTTTTGTTTTTTCTGTTTTTGTTTGTTTTTTCATATTTTCTTAGCTTTGCTGTTTCTAACTGATACATAGAGATTATTTTCCCACTGTTACTTTTTCCTTTTTTGACCATTTG                                                                                                                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BX613329             [                                                                                                                                                                                                                                                                                                                                                                                                       CGGTCATGTAGCGACGAGACGTGGGTATCAGTTCGGTTTTGGTTTTCTCGATCCTGTTTATCCTAAGCGATTTGTTAGATTATGCTTTCTCTTGTATAGACTGTTATGAAATATGTTATGGTAGCTTTAAGCGTTTTTTTT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL BX610258             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                      TAAGCGATTTGTTAGATTATGCTTTCTCTTGTACAGACTGTTATGAAATATGTTATGGTAGCTTTAAGCGTTTTTTTTCTTTTGTTTTTTCTGTTTTTGTTTGTTTTTTCATATTTTCTTAGCTTTGCTGTTTCTAACTGATACATAGAGATTATTTTCCCACTGTTACTTTTTCCTTTTTTGACCATTTGGTAGATTTCGCAGTAATACAGTTATGCTTTCGTTAACCTTAACTTAATTCAATCGCCTAGAATGCGTCTTTGGAATGCGTTACCCAAAATCTGAATCACATAATAAAAAAAACCCAATTTGTCTCCTCAGAAAAACAAACGAAACAAAAAGACATTTTTTATCACAGCACTATCCGGCAACGTAAATATTAAAATAAGTCTTAACAATGTCAAACTCCTCACAGTAAAAAAGTGAATGCTATTGCACACGTACATACACACTCTCACATACACAGTGTCAACAAACGTTCACAATACATACACACATGAAAACGACTTTTCAAAGAACAGCGGTACCCTTTTAGAACGACAGAAAACGTTAATAACAAAACATTTAAGAAAAACACGCTTTCAAAATAATGTCAACGTAAATGGGGGAGATAGTAAGTGCGATGC]


>consensus_5090#0 TTGGTACTAGAAAGTTTGCATAGAACAAAAGTTAGAAAGTGATAAGCAAAATGAAGAGCA AAACAAAAAAACTGTCGAATGAATGAAATTAACGACTTTTGGGGGGAGGAAGTGTAAACC AGAAAAGAAGGTAATAGGCAAACCCAATGATATTAATTAGAAGAAGAAAGGCATGGCACA AACAAGTAGATAAGATGGACAAAAACTAAAACAGATGAAAAAGACAACAACAAAAAGAGT ATCCTTCTCGGTTTCCATCTACGGAAGAAGGCTTCATTCGGCTTCAAACCAGTGAATGTA CAAGATAAGACATACTAAACCCAGTGAAAAGGACCCGTGCTCTCCGAAAAGTGTGTCCAG TAAAGCGATAGGTTCGTTTGTACAAGAAAAACGGTCATGTAGCGACGAGACGTGTGTATC AGTTCGGTTTTGGTTTTCTCGATCCTGTTTATCCTAAGCGATTTGTTAGATTATGCTTTC TCTTGTACAGACTGTTATGAAATATGTTATGGTAGCTTTAAGCGTTTTTTTTCTTTTGTT TTTTCTGTTTTTGTTTGTTTTTTCATATTTTCTTAGCTTTGCTGTTTCTAACTGATACAT AGAGATTATTTTCCCACTGTTACTTTTTCCTTTTTTGACCATTTGGTAGATTTCGCAGTA ATACAGTTATGCTTTCGTTAACCTTAACTTAATTCAATCGCCTAGAATGCGTCTTTGGAA TGCGTTACCCAAAATCTGAATCACATAATAAAAAAAACCCAATTTGTCTCCTCAGAAAAA CAAACGAAACAAAAAGACATTTTTTATCACAGCACTATCCGGCAACGTAAATATTAAAAT AAGTCTTAACAATGTCAAACTCCTCACAGTAAAAAAGTGAATGCTATTGCACACGTACAT ACACACTCTCACATACACAGTGTCAACAAACGTTCACAATACATACACACATGAAAACGA CTTTTCAAAGAACAGCGGTACCCTTTTAGAACGACAGAAAACGTTAATAACAAAACATTT AAGAAAAACACGCTTTCAAAATAATGTCAACGTAAATGGGGGAGATAGTAAGTGCGATGC



consensusID : consensus_5090#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 804
fasta sequence
                              [CGCGGTTACTGTTACTATTNTCCTNTTTTNNTACCATTTGGTAGATTTCGCAGTAATACAGTTATGCTTTCGTGNAACCTTAACTTAATTCAATCGCCTAGAATGCGTACTTTCGAATGCGTTACCCAAAAACTGAATCACATAATAAAAAAAACCCAATTTGTACTCCTCAGAAAAACAAACGAAACAAAAAGACCTTTATTTATACACAGGCACATATCCGGCAACGTAANNTATTAAGAGATAAACGTCTTACACAACTGTCCAACTCCTCACAGGTAACACACNAGTGAACTGCGTATTGCANCCACGTACAATACAACGAACCCTCAACCATTACACACCACGTTGGTACCAAAACAAACACNTTACAACCAAAATTACCATAAACACCAACCATTGAACANACAACCGACATATTCATACCACAACGACAAACCAGCCTGGGTAAACCCCCCTCATCTATTCANAACACCGTAACCNCGCTAGACCCACCGTNCTCACACTNNANACACCAANACAGGCNACATATATAACACGGGAACAGAACACACACCAACGCGGACCTTATATCTACCANCACACANACTTCNAACACTCGGGTTACCACCACCTGGCTACNCANCAANNTGNTGGTGGANGGGGCCACAGACATCAAAGGTANCAACGCTTNGGACCNCGNANTTGGCGGNACATTAACANACCANGCACCTCNAGACGCTTACAAACAACNCAAACACCGACCACAACANAGACCAACATAACANCTCAACCACACGGGGTNCANACANCAGCCAAACTTAA]

[+] EMBL AL692529             [CGCGGTTACTGTTACTATTNTCCTNTTTTNNTACCATTTGGTAGATTTCGCAGTAATACAGTTATGCTTTCGTGNAACCTTAACTTAATTCAATCGCCTAGAATGCGTACTTTCGAATGCGTTACCCAAAAACTGAATCACATAATAAAAAAAACCCAATTTGTACTCCTCAGAAAAACAAACGAAACAAAAAGACCTTTATTTATACACAGGCACATATCCGGCAACGTAANNTATTAAGAGATAAACGTCTTACACAACTGTCCAACTCCTCACAGGTAACACACNAGTGAACTGCGTATTGCANCCACGTACAATACAACGAACCCTCAACCATTACACACCACGTTGGTACCAAAACAAACACNTTACAACCAAAATTACCATAAACACCAACCATTGAACANACAACCGACATATTCATACCACAACGACAAACCAGCCTGGGTAAACCCCCCTCATCTATTCANAACACCGTAACCNCGCTAGACCCACCGTNCTCACACTNNANACACCAANACAGGCNACATATATAACACGGGAACAGAACACACACCAACGCGGACCTTATATCTACCANCACACANACTTCNAACACTCGGGTTACCACCACCTGGCTACNCANCAANNTGNTGGTGGANGGGGCCACAGACATCAAAGGTANCAACGCTTNGGACCNCGNANTTGGCGGNACATTAACANACCANGCACCTCNAGACGCTTACAAACAACNCAAACACCGACCACAACANAGACCAACATAACANCTCAACCACACGGGGTNCANACANCAGCCAAACTTAA]


>consensus_5090#1 CGCGGTTACTGTTACTATTNTCCTNTTTTNNTACCATTTGGTAGATTTCGCAGTAATACA GTTATGCTTTCGTGNAACCTTAACTTAATTCAATCGCCTAGAATGCGTACTTTCGAATGC GTTACCCAAAAACTGAATCACATAATAAAAAAAACCCAATTTGTACTCCTCAGAAAAACA AACGAAACAAAAAGACCTTTATTTATACACAGGCACATATCCGGCAACGTAANNTATTAA GAGATAAACGTCTTACACAACTGTCCAACTCCTCACAGGTAACACACNAGTGAACTGCGT ATTGCANCCACGTACAATACAACGAACCCTCAACCATTACACACCACGTTGGTACCAAAA CAAACACNTTACAACCAAAATTACCATAAACACCAACCATTGAACANACAACCGACATAT TCATACCACAACGACAAACCAGCCTGGGTAAACCCCCCTCATCTATTCANAACACCGTAA CCNCGCTAGACCCACCGTNCTCACACTNNANACACCAANACAGGCNACATATATAACACG GGAACAGAACACACACCAACGCGGACCTTATATCTACCANCACACANACTTCNAACACTC GGGTTACCACCACCTGGCTACNCANCAANNTGNTGGTGGANGGGGCCACAGACATCAAAG GTANCAACGCTTNGGACCNCGNANTTGGCGGNACATTAACANACCANGCACCTCNAGACG CTTACAAACAACNCAAACACCGACCACAACANAGACCAACATAACANCTCAACCACACGG GGTNCANACANCAGCCAAACTTAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5090#0      TTGGTACTAGAAAGTTTGCATAGAACAAAAGTTAGAAAGTGATAAGCAAAATGAAGAGCA 60
consensus_5090#1      ------------------------------------------------------------
                                                                                  

consensus_5090#0      AAACAAAAAAACTGTCGAATGAATGAAATTAACGACTTTTGGGGGGAGGAAGTGTAAACC 120
consensus_5090#1      ------------------------------------------------------------
                                                                                  

consensus_5090#0      AGAAAAGAAGGTAATAGGCAAACCCAATGATATTAATTAGAAGAAGAAAGGCATGGCACA 180
consensus_5090#1      --------------------------------------------------------CGCG 4
                                                                              * * 

consensus_5090#0      AACAAGTAGATAAGATGGACAAAAACTAAAAC-AGATGAAAAAGACAACAACAAAAAGAG 239
consensus_5090#1      GTTA--CTGTTACTATTNTCCTNTTTTNNTACCATTTGGTAGATTTCGCAGTAATACAGT 62
                         *    * **  **   *      *   ** *  **  * *     **  ** *    

consensus_5090#0      TATCCTTCTCGGTTTCCATCTACGGAAGAAGGCTTCATTCGGCTTCAAACCAGTGAATGT 299
consensus_5090#1      TATGCTT-TCGTGNAACCTTAACTTAATTCAATCGC-CTAGAATGCGTACTTTCGAATGC 120
                      *** *** ***     * *  **  **        *  * *  * *  **    ***** 

consensus_5090#0      ACAAGATAAGACATACTAAACCCAGTGAAAAGGACCC-----GTGCTCTCC-GAAAAGTG 353
consensus_5090#1      GTTACCCAAAAACTGAATCACATAATAAAAAAAACCCAATTTGTACTCCTCAGAAAAACA 180
                         *   ** *  *     **  * * ****  ****     ** ***  * *****   

consensus_5090#0      TGTCCAGTAAAGCGATAGGTTCGTTTGTACAAGAAAAACGGTCATGTAGCGACGAGACGT 413
consensus_5090#1      AACGAAACAAAAAGAC--CTTTATTTATACAC---AGGCACATATCCGGCAACGTAANNT 235
                           *  ***  **    **  *** ****    *  *    **   ** ***  *  *

consensus_5090#0      GTGTATCAGTTCGGTTTTGGTTTTCTCGATCCTGTTTATCCTAAGCGATTTGTTAGATTA 473
consensus_5090#1      AT-TAAGAGATAAACGTCTTACACAACTGTCCAACTCCTCACAGGTAACACACNAG--TG 292
                       * **  ** *     *         *  ***   *  **  * *  *      **  * 

consensus_5090#0      TGCTTTCTCTTGTACAGACTGTTATGAAATATGTTATGGTAGCTTTAAGCGTTTTTTTTC 533
consensus_5090#1      AACTGCGTATTGCAN------CCACGTACAATACAACGA-ACCCTCAACCATTACACACC 345
                        **   * *** *         * * *  **   * *  * * * ** * **      *

consensus_5090#0      TT-TTGTTTTTTCTGTTTTTGTTTGTTTTTTCATATTTTCTTAGCTTTGCTGTTTCTAAC 592
consensus_5090#1      ACGTTGGTACCAAAACAAACACNTTACAACCAAAATTACCATAAACACCAACCATTGAAC 405
                         *** *               *        * ***  * **           *  ***

consensus_5090#0      TGATA-CATAGAGATTATTTTCCCACTGTTACTTTTTCCTTTTTTGACCATTTGGTAGAT 651
consensus_5090#1      ANACAACCGACATATTCATACCACAACGACAAACCAGCCTGGGTAAACCCCCCTCATCTA 465
                        * * *  * * ***  *  * **  *  *      ***   *  ***           

consensus_5090#0      TTCGCAGTAATACAGTTATGCTTTCGTTAACCTTAACTTAATTCAATCGCCTAGAATGCG 711
consensus_5090#1      TTCANAACACCGTAACCNCGCTAGACCCACCGTNCTCACACTNNANACACCAANACAGG- 524
                      ***  *  *    *     ***      * * *   *  * *  *  * ** * *  *  

consensus_5090#0      TCTTTGGAATGCGTTACCCAAAATCTGAATCACATAATAAAAAAAACCCAATTTGTCTCC 771
consensus_5090#1      ----CNACATATATAACACGGGAACAGAA-CACACACCAACGCGGACCTTATATCTACCA 579
                              **   * ** *   * * *** **** *  **     ***  ** * *  * 

consensus_5090#0      TCAGAAAAACAAACGAAACAAAAAGACATTTTTTATCACAGCACTATCCGGCAACGTAAA 831
consensus_5090#1      NCACACANACTTCNAACACTCGGG-----TTACCACCACCTGGCTACNCANCAANNTGN- 633
                       ** * * **     * **          **   * ***    ***  *  ***  *   

consensus_5090#0      TATTAAAATAAGTCTTAACAATGTCAAACTCCTCACAGTAAAAAAGTGAATGCTATTGCA 891
consensus_5090#1      TGGTGGANGGGGCCACAG--ACATCAAA--------GGTANCAACGCTTNGGACCNCGNA 683
                      *  *  *    * *  *   *  *****         ***  ** *     *     * *

consensus_5090#0      CACGTACATACACACTCTCACATACACAGTGTCAACAAACGTTCACAATACATACACACA 951
consensus_5090#1      NTTGGCGGNACAT----TAACANACCANGCACCTCNAGACGCTTACAA-ACA-ACNCAAA 737
                         *     ***     * *** **   *   *   * *** * **** *** ** ** *

consensus_5090#0      TGAAAACGACTTTTCAAAGAACAGCGGTACCCTTTTAGAACGACAGAAAACGTTAATAAC 1011
consensus_5090#1      CACCGACCACAA--CANAGACCAACATAACANCTC---AACCACACGGGGTNCANACANC 792
                           ** **    ** *** ** *   **   *    *** ***          * * *

consensus_5090#0      AAA-ACATTTAAGAAAAACACGCTTTCAAAATAATGTCAACGTAAATGGGGGAGATAGTA 1070
consensus_5090#1      AGCCAAACTTAA------------------------------------------------ 804
                      *   * * ****                                                

consensus_5090#0      AGTGCGATGC 1080
consensus_5090#1      ----------
                                




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)