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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5096#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 717 fasta sequence
[GGCAGAATCGGCACGATGGTGAAAACAAATAGGGAGCATTTCGGTTTTACTCAGCAAAAATAATATTTTATCTGCCTGTGATCCATTTTTAGGAAATAAAACCAAATTTCTTGGCATACTTCGCAACCCGCGTACCAGAATTGCGAAATTATAGACGTAGTGTATTAAATCTTACCGGTCTTTAATCCGCGTAGAAAAGCTAGATATGAATAATTATATCAAATTCATGGAGGTCCTAGGGAATGTTAAGCATTTAAAACGGACCGGATGGGTTTTGAGAAAGGTTAAAGATTGCGAAACCGTATCGGGTCACATGTACCGAATGGCGATGATGTCATTTTTTCTAGAAGATAGTCACGGTTTGGACAGGATCCGTGTAATGGAAATGTCCCTCGTGCACGATCTGGCGGAAGGAATCGTGGGCGATATAACACCGTACTGCGGTGTTTCGCGCGAGGAAAAATTGCTCAAAGAATTTTCCGCCATGACAGAGATAGCCAGTTTACTTGGCCCTAACAAGGATAAGATGTTGGCGCTGTTCAACGAATATGAGGAACGGCAAGACACCAGAAGGGCAAAGTTCGTGAAAGGATCTCGACCGGCTCGACATGGTGATGCAGGCATACGAATACGAGAAAACGGGACAGTTGCCACAAAAACTTGCAAGAGTTTTTTGTTTCGNCGGAAAATTATTTTTCCCCATTCCTNGGTGTTGAA]
[+] EMBL BX469874 [GGCAGAATCGGCACGATGGTGAAAACAAATAGGGAGCATTTCGGTTTTACTCAGCAAAAATAATATTTTATCTGCCTGTGATCCATTTTTAGGAAATAAAACCAAATTTCTTGGCATACTTCGCAACCCGCGTACCAGAATTGCGAAATTATAGACGTAGTGTATTAAATCTTACCGGTCTTTAATCCGCGTAGAAAAGCTAGATATGAATAATTATATCAAATTCATGGAGGTCCTAGGGAATGTTAAGCATTTAAAACGGACCGGATGGGTTTTGAGAAAGGTTAAAGATTGCGAAACCGTATCGGGTCACATGTACCGAATGGCGATGATGTCATTTTTTCTAGAAGATAGTCACGGTTTGGACAGGATCCGTGTAATGGAAATGTCCCTCGTGCACGATCTGGCGGAAGGAATCGTGGGCGATATAACACCGTACTGCGGTGTTTCGCGCGAGGAAAAATTGCTCAAAGAATTTTCCGCCATGACAGAGATAGCCAGTTTACTTGGCCCTAACAAGGATAAGATGTTGGCGCTGTTCAACGAATATGAGGAACGGCAAGACACCAGAAGGGCAAAGTTCGTGAAAGGATCTCGACCGGCTCGACATGGTGATGCAGGCATACGAATACGAGAAAACGGGACAGTTGCCACAAAAACTTGCAAGAGTTTTTTGTTTCGNCGGAAAATTATTTTTCCCCATTCCTNGGTGTTGAA]
consensusID : consensus_5096#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 595 fasta sequence
[ACCCACGATTAAAATTCACGATGAAAACACTAGGGAGCATTTCGGTTTTACTCAGCAAAAATAATATTTTATCTGCCTGTGATCCATTTTTAGGAAATAAAACCAAATTTCTTGGCATACTTCGCAACCCGCGTACCAGAATTGCGAAATTATAGACGTAGTGTATTAAATCTTACCGGTCTTTAATCCGCGTAGAAAAGCTAGATATGAATAATTATATCAAATTCATGGAGGTCCTAGGGAATGTTAAGCATTTAAAACGGACCGGATGGGTTTTGAGAAAGGTTAAAGATTGCGAAACCGTATCGGGTCACATGTACCGAATGGCGATGATGTCATTTATTTCTAGAAGATAGTCACGGTTTGGACAGGATCCGTGTAATGGAAATGTCCCTCGTGCACGATCTGGCGGAAGGAATCGTGGGCGATATAACACCGTACTGCGGTGTTTCGCGCGAGGCAAAAATTGCTCAAAGAATTTTCCGCCATGACAGAGATAGCCACGTTTACTTGGCCTAACAAGGATAAGATGTTGGCGCTGTTCAACGAACTATGAGGAAGGCAAGACACCAGAGGCAAAGTTCGTGAAAGATCT]
[+] EMBL AL692635 [ACCCACGATTAAAATTCACGATGAAAACACTAGGGAGCATTTCGGTTTTACTCAGCAAAAATAATATTTTATCTGCCTGTGATCCATTTTTAGGAAATAAAACCAAATTTCTTGGCATACTTCGCAACCCGCGTACCAGAATTGCGAAATTATAGACGTAGTGTATTAAATCTTACCGGTCTTTAATCCGCGTAGAAAAGCTAGATATGAATAATTATATCAAATTCATGGAGGTCCTAGGGAATGTTAAGCATTTAAAACGGACCGGATGGGTTTTGAGAAAGGTTAAAGATTGCGAAACCGTATCGGGTCACATGTACCGAATGGCGATGATGTCATTTATTTCTAGAAGATAGTCACGGTTTGGACAGGATCCGTGTAATGGAAATGTCCCTCGTGCACGATCTGGCGGAAGGAATCGTGGGCGATATAACACCGTACTGCGGTGTTTCGCGCGAGGCAAAAATTGCTCAAAGAATTTTCCGCCATGACAGAGATAGCCACGTTTACTTGGCCTAACAAGGATAAGATGTTGGCGCTGTTCAACGAACTATGAGGAAGGCAAGACACCAGAGGCAAAGTTCGTGAAAGATCT]
consensusID : consensus_5096#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 587 fasta sequence
[CCGCCCACGCGTCCGAAAACAAATAGGGAGCATTTCGGTTTTACTCAGCAAAAATAATATTTTATCTGCCTGTGATCCATTTTTAGGAAATAAAACCAAATTTCTTGGCACACTTCGCAACCCGCGCACCAGAATTGCGAAATTATAGACGTAGTGTATTAAATCTTACCGGTCTGTAATCCGCGTAGAAAAGCTAGATATGAATAATCATATCAAATTCATGGAGGTCCTAGGGAATGTTAAGCATTTAAAACGGACCGGATGGGTCTTGAGAAAGGTTAAAGACTGCGAAACCGTATCGGGTCACATGTACCGAATGGCGATGATGTCATTTTTTCTAGAAGATAGTCACGGTTTGGACAGGATCCGTGTAATGGAAATGTCCCTCGTGCACGATCTGGCGGAAGGAATCGTGGGCGATATAACACCGTACTGCGGTGTTTCGCGCGAGGAAAAATTGCTCAAAGAATTTTCCGCCATGACAGAGATAGCCAGTTTACTTGGCCCTAACAAGGATAAGATGTTGGCGCTGTTCAACGAATATGAGGAAGGCAAGACACCAGAGGCAAAGTTCGTGGAAAGATCTC]
[+] EMBL BM638711 [CCGCCCACGCGTCCGAAAACAAATAGGGAGCATTTCGGTTTTACTCAGCAAAAATAATATTTTATCTGCCTGTGATCCATTTTTAGGAAATAAAACCAAATTTCTTGGCACACTTCGCAACCCGCGCACCAGAATTGCGAAATTATAGACGTAGTGTATTAAATCTTACCGGTCTGTAATCCGCGTAGAAAAGCTAGATATGAATAATCATATCAAATTCATGGAGGTCCTAGGGAATGTTAAGCATTTAAAACGGACCGGATGGGTCTTGAGAAAGGTTAAAGACTGCGAAACCGTATCGGGTCACATGTACCGAATGGCGATGATGTCATTTTTTCTAGAAGATAGTCACGGTTTGGACAGGATCCGTGTAATGGAAATGTCCCTCGTGCACGATCTGGCGGAAGGAATCGTGGGCGATATAACACCGTACTGCGGTGTTTCGCGCGAGGAAAAATTGCTCAAAGAATTTTCCGCCATGACAGAGATAGCCAGTTTACTTGGCCCTAACAAGGATAAGATGTTGGCGCTGTTCAACGAATATGAGGAAGGCAAGACACCAGAGGCAAAGTTCGTGGAAAGATCTC]
consensusID : consensus_5096#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 195 fasta sequence
[CCGTTCGGTTTTACTCAGCAAAAATAATATTTTATCTGCCTGTGATCCAATTTTAGGAAATAAAACCAAATTTCTTGGCACACTTCGCAACCCGGTAAAAAGAAATCATGCGTTCGTCGAATAAGCATTCTTTAGTTTAACTCTACAAGCGTGGAGTGGAAGTTTGCGGGCTTAGTTTTGTTTAACCCAGTGGTG]
[+] EMBL BM597233 [CCGTTCGGTTTTACTCAGCAAAAATAATATTTTATCTGCCTGTGATCCAATTTTAGGAAATAAAACCAAATTTCTTGGCACACTTCGCAACCCGGTAAAAAGAAATCATGCGTTCGTCGAATAAGCATTCTTTAGTTTAACTCTACAAGCGTGGAGTGGAAGTTTGCGGGCTTAGTTTTGTTTAACCCAGTGGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5096#0 -GGCAGAATCGGCACG-ATGGT-GAAAACAAATAGGGAGCATTTCGGTTTTACTCAGCAA 57
consensus_5096#1 ACCCACGATTAAAATTCACGAT-GAAAACAC-TAGGGAGCATTTCGGTTTTACTCAGCAA 58
consensus_5096#2 ---------CCGCCCACGCGTCCGAAAACAAATAGGGAGCATTTCGGTTTTACTCAGCAA 51
consensus_5096#3 ---------------------------------------CCGTTCGGTTTTACTCAGCAA 21
* ******************
consensus_5096#0 AAATAATATTTTATCTGCCTGTGATCCATTTTTAGGAAATAAAACCAAATTTCTTGGCAT 117
consensus_5096#1 AAATAATATTTTATCTGCCTGTGATCCATTTTTAGGAAATAAAACCAAATTTCTTGGCAT 118
consensus_5096#2 AAATAATATTTTATCTGCCTGTGATCCATTTTTAGGAAATAAAACCAAATTTCTTGGCAC 111
consensus_5096#3 AAATAATATTTTATCTGCCTGTGATCCAATTTTAGGAAATAAAACCAAATTTCTTGGCAC 81
**************************** ******************************
consensus_5096#0 ACTTCGCAACCCGCGTACCAGAA-TTGCGAAATTATAGACGTAGTGTATTAAATCTTACC 176
consensus_5096#1 ACTTCGCAACCCGCGTACCAGAA-TTGCGAAATTATAGACGTAGTGTATTAAATCTTACC 177
consensus_5096#2 ACTTCGCAACCCGCGCACCAGAA-TTGCGAAATTATAGACGTAGTGTATTAAATCTTACC 170
consensus_5096#3 ACTTCGCAACCCGGTAAAAAGAAATCATGCGTTCGTCGAATAAGCATTCTTTAGTTTAAC 141
************* * **** * * * * ** ** * * * *** *
consensus_5096#0 GGTCTTTAATCCGCGTAGAAAAGCTAGATATGAATAATTATATCAAATTCATGGAGGTCC 236
consensus_5096#1 GGTCTTTAATCCGCGTAGAAAAGCTAGATATGAATAATTATATCAAATTCATGGAGGTCC 237
consensus_5096#2 GGTCTGTAATCCGCGTAGAAAAGCTAGATATGAATAATCATATCAAATTCATGGAGGTCC 230
consensus_5096#3 --TCTACAAGC-GTGGAGTGGAAGTTTGCGGGCTTAGTTTTGTTTAACCCAGTGGTG--- 195
*** ** * * * ** * * * ** * * * ** ** * *
consensus_5096#0 TAGGGAATGTTAAGCATTTAAAACGGACCGGATGGGTTTTGAGAAAGGTTAAAGATTGCG 296
consensus_5096#1 TAGGGAATGTTAAGCATTTAAAACGGACCGGATGGGTTTTGAGAAAGGTTAAAGATTGCG 297
consensus_5096#2 TAGGGAATGTTAAGCATTTAAAACGGACCGGATGGGTCTTGAGAAAGGTTAAAGACTGCG 290
consensus_5096#3 ------------------------------------------------------------
consensus_5096#0 AAACCGTATCGGGTCACATGTACCGAATGGCGATGATGTCATTT-TTTCTAGAAGATAGT 355
consensus_5096#1 AAACCGTATCGGGTCACATGTACCGAATGGCGATGATGTCATTTATTTCTAGAAGATAGT 357
consensus_5096#2 AAACCGTATCGGGTCACATGTACCGAATGGCGATGATGTCATTT-TTTCTAGAAGATAGT 349
consensus_5096#3 ------------------------------------------------------------
consensus_5096#0 CACGGTTTGGACAGGATCCGTGTAATGGAAATGTCCCTCGTGCACGATCTGGCGGAAGGA 415
consensus_5096#1 CACGGTTTGGACAGGATCCGTGTAATGGAAATGTCCCTCGTGCACGATCTGGCGGAAGGA 417
consensus_5096#2 CACGGTTTGGACAGGATCCGTGTAATGGAAATGTCCCTCGTGCACGATCTGGCGGAAGGA 409
consensus_5096#3 ------------------------------------------------------------
consensus_5096#0 ATCGTGGGCGATATAACACCGTACTGCGGTGTTTCGCGCGAGG-AAAAATTGCTCAAAGA 474
consensus_5096#1 ATCGTGGGCGATATAACACCGTACTGCGGTGTTTCGCGCGAGGCAAAAATTGCTCAAAGA 477
consensus_5096#2 ATCGTGGGCGATATAACACCGTACTGCGGTGTTTCGCGCGAGG-AAAAATTGCTCAAAGA 468
consensus_5096#3 ------------------------------------------------------------
consensus_5096#0 ATTTTCCGCCATGACAGAGATAGCCA-GTTTACTTGGCCCTAACAAGGATAAGATGTTGG 533
consensus_5096#1 ATTTTCCGCCATGACAGAGATAGCCACGTTTACTTGGCC-TAACAAGGATAAGATGTTGG 536
consensus_5096#2 ATTTTCCGCCATGACAGAGATAGCCA-GTTTACTTGGCCCTAACAAGGATAAGATGTTGG 527
consensus_5096#3 ------------------------------------------------------------
consensus_5096#0 CGCTGTTCAACGAA-TATGAGGAACGGCAAGACACCAGAAGGGCAAAGTTCGTGAAAGGA 592
consensus_5096#1 CGCTGTTCAACGAACTATGAGGAA-GGCAAGACACCAGA--GGCAAAGTTCGTGAAAG-A 592
consensus_5096#2 CGCTGTTCAACGAA-TATGAGGAA-GGCAAGACACCAGA--GGCAAAGTTCGTGGAAAGA 583
consensus_5096#3 ------------------------------------------------------------
consensus_5096#0 TCTCGACCGGCTCGACATGGTGATGCAGGCATACGAATACGAGAAAACGGGACAGTTGCC 652
consensus_5096#1 TCT--------------------------------------------------------- 595
consensus_5096#2 TCTC-------------------------------------------------------- 587
consensus_5096#3 ------------------------------------------------------------
consensus_5096#0 ACAAAAACTTGCAAGAGTTTTTTGTTTCGNCGGAAAATTATTTTTCCCCATTCCTNGGTG 712
consensus_5096#1 ------------------------------------------------------------
consensus_5096#2 ------------------------------------------------------------
consensus_5096#3 ------------------------------------------------------------
consensus_5096#0 TTGAA 717
consensus_5096#1 -----
consensus_5096#2 -----
consensus_5096#3 -----
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||