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Anopheles gambiae
cluster # 5098 cluster # 5098       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5098#0 length = 737 sequences # 2  
consensus_5098#1 length = 616 sequences # 2  

consensusID : consensus_5098#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 737
fasta sequence
                              [TTTTANTCNATAATTACGACCTTTGTTTAGTTTTATTTTCTCACGATTGTTTGTCAATTCGCTTTGTCGATTCGCTTTGGGGTTTGTTCACTTTACAGCAGTTTTATATAAACGTGTACAAGTATAAATGTAAATAAAACAAAACATTCCATTAAAAACAGGAAACAATGTTAATGGGCCTGCTCGGCGAGCTGAAGAAGAGTAATGTGGGAAAGACATTGCCGCTTGCTTGCCCAGTCAACTATGTCTCTTGTCTTCTACGCACGGTTACACTTTCCGGTCCGGTTCCGTGTGCTTATTGGTGGTATTGATTGGTTCGAATGTGTGTTTTTTTATATTCCTGTGCTTGGTTCGGTTCGCTCTTTGTGCGTTTCCGGTGTTTCCTTTCGCTTTGTTGACTGTTATCGTAGCTTTTATTCTATGAATTGTTCTTANAACTTGTTGTTTGTTTTGACGAGTGTTTGAATTGAGCTTCATATTTCTTCTTTTTTTTTTCTTCCAA--TGCAATGGTGCATTGTTTCGTTCGCAACAGTTTAATAAATTTTAGTTGTTTTCCTGGNGGTTGTGCTTCTTTCAGCGCGCTTTTTGTATCTAAACGAAGCAAAATATAGAAACTAAACCCTGCAAGCTTCCACCAGCATACACTAACACTGACTGGTTTCTTCATCTTACCGCTTTTAACGTGTTTTGNGGGTCATGCTGCTGAAATGATGAATCTATACGTTTTGTTTCTAAAA]

[+] EMBL BX624413             [TTTTANTCNATAATTACGACCTTTGTTTAGTTTTATTTTCTCACGATTGTTTGTCAATTCGCTTTGTCGATTCGCTTTGGGGTTTGTTCACTTTACAGCAGTTTTATATAAACGTGTACAAGTATAAATGTAAATAAAACAAAACATTCCATTAAAAACAGGAAACAATGTTAATGGGCCTGCTCGGCGAGCTGAAGAAGAGTAATGTGGGAAAGACATTGCCGCTTGCTTGCCCAGTCAACTATGTCTCTTGTCTTCTACGCACGGTTACACTTTCCGGTCCGGTTCCGTGTGCTTATTGGTGGTATTGATTGGTTCGAATGTGTGTTTTTTTATATTCCTGTGCTTGGTTCGGTTCGCTCTTTGTGCGTTTCCGGTGTTTCCTTTCGCTTTGTTGACTGTTATCGTAGCTTTTATTCTATGAATTGTTCTTANAACTTGTTGTTTGTTTTGACGAGTGTTTGAATTGAGCTTCATATTTCTTCTTTTTTTTTTCTTCCAA  TGCAATGG                                                                                                                                                                                                                                   ]
[+] EMBL BX625176             [            ATTACGACCTTTGTTT CTTTTATTTTCTCACGATTGTTTGTCAATTCGCTTTGTCGATTCGCTTTGGGGTTTGTTCACTTTACAGCAGTTTTATATAAACGT TACAAGTATAAATGTAAATAAAACAAAACATTCCATTAAAAACAGGAAACAATGTTAATGGGCCTGCTCGGCGAGCTGAAGAAGAGTAATGTGGGAAAGACATTGCCGCTTGCTTGCCCAGTCAACTATGTCTCTTGTCTTCTACGCACGGTTACACTTTCCGGTCCGGTTCCGTGTGCTTATTGGTGGTATTGATTGGTTCGAATGTGTGTTTTTTTATATTCCTGTGCTTGGTTCGGTTCGCTCTTTGTGCGTTTCCGGTGTTTCCTTTCGCTTTGTTGACTGTTATCGTAGCTTTTATTCTATGAATTGTTCTTAGAACTTGTTGTTTGTTTTGACGAGTGTTTGAATTGAGCTTCATATTTCTTC TTTTTTTTTCTTCCCATGTGCCAT  TGCATTGTTTCGTTCGCAACAGTTTAATAAATTTTAGTTGTTTTCCTGGNGGTTGTGCTTCTTTCAGCGCGCTTTTTGTATCTAAACGAAGCAAAATATAGAAACTAAACCCTGCAAGCTTCCACCAGCATACACTAACACTGACTGGTTTCTTCATCTTACCGCTTTTAACGTGTTTTGNGGGTCATGCTGCTGAAATGATGAATCTATACGTTTTGTTTCTAAAA]


>consensus_5098#0 TTTTANTCNATAATTACGACCTTTGTTTAGTTTTATTTTCTCACGATTGTTTGTCAATTC GCTTTGTCGATTCGCTTTGGGGTTTGTTCACTTTACAGCAGTTTTATATAAACGTGTACA AGTATAAATGTAAATAAAACAAAACATTCCATTAAAAACAGGAAACAATGTTAATGGGCC TGCTCGGCGAGCTGAAGAAGAGTAATGTGGGAAAGACATTGCCGCTTGCTTGCCCAGTCA ACTATGTCTCTTGTCTTCTACGCACGGTTACACTTTCCGGTCCGGTTCCGTGTGCTTATT GGTGGTATTGATTGGTTCGAATGTGTGTTTTTTTATATTCCTGTGCTTGGTTCGGTTCGC TCTTTGTGCGTTTCCGGTGTTTCCTTTCGCTTTGTTGACTGTTATCGTAGCTTTTATTCT ATGAATTGTTCTTANAACTTGTTGTTTGTTTTGACGAGTGTTTGAATTGAGCTTCATATT TCTTCTTTTTTTTTTCTTCCAATGCAATGGTGCATTGTTTCGTTCGCAACAGTTTAATAA ATTTTAGTTGTTTTCCTGGNGGTTGTGCTTCTTTCAGCGCGCTTTTTGTATCTAAACGAA GCAAAATATAGAAACTAAACCCTGCAAGCTTCCACCAGCATACACTAACACTGACTGGTT TCTTCATCTTACCGCTTTTAACGTGTTTTGNGGGTCATGCTGCTGAAATGATGAATCTAT ACGTTTTGTTTCTAAAA



consensusID : consensus_5098#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 616
fasta sequence
                              [GATCCCCCCGCAGGTTAAAAGGAAAAAGAAGGAGAAGNCAAAAACAACTACAGAAGGAAAACGGATACATTTAATCAGCAACCATCCCGAGCAGATTACCAAATCTTTCAACACACAGCATAGTTCAACCGTTCAATAGTGAACTGTGAAAAGCTAAACTGCTAATAGAAAGGTAAAAAAGGAATAATTTTCTAAAACCTGTTCTACATCACACTCCTCCTTAAGCTCGTACCGTGGAGGAGAAGCAAAACACAACGTCAATGAAATAGAAAAGAAAAAAAAAACTACAAAGCCAATCTAACCAAACTGAACGCACAGAAGGAGCGTTTGCGAAATGAACGAAGCTTGTACGTCCAATGTATAGAAAAGAAAACTACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACTAGTAAGAAACAAGCGTATAACATGTCGGGTGTTGCTTTGATGGTTACGTCTAAATGAAAGCTATAGATTTGTTTTAGAAACAAAACGTATAGATCCATCATTTCAGCAGCATAAACCACAAAACACGTTAAAAGCGATAAGCATGAAGAAAACAGTCAGTGTTAGTGTATGCTGGGTGGAAGCT]

[+] EMBL AL692642             [GATCCCCCCGCAGGTTAAAAGGAAAAAGAAGGAGAAGNCAAAAACAACTACAGAAGGAAAACGGATACATTTAATCAGCAACCATCCCGAGCAGATTACCAAATCTTTCAACACACAGCATAGTTCAACCGTTCAATAGTGAACTGTGAAAAGCTAAACTGCTAATAGAAAGGTAAAAAAGGAATAATTTTCTAAAACCTGTTCTACATCACACTCCTCCTTAAGCTCGTACCGTGGAGGAGAAGCAAAACACAACGTCAATGAAATAGAAAAGAAAAAAAAAACTACAAAGCCAATCTAACCAAACTGAACGCACAGAAGGAGCGTTTGCGAAATGAACGAAGCTTGTACGTCCAATGTATAGAAAAGAAAACTACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACTAGTAAGAAACAAGCGTATAACATGTCGGGTGTTGCTTTGATGGTTACGTCTAAATGAAAGCTATAGATTTGTTTTAGAAACAAAACGTATAGATCCATCATTTCAGCAGCATAAACCACAAAACACGTTAAAAGCGATAAGCATGAAGAAAACAGTCAGTGTTAGTGTATGCTGGGTGGAAGCT]
[+] EMBL BX619020             [                                                                                                                                                                                                                                                                   AATGAAATAGAAAAGAAAAAAAAAACTACAAAGCCAATCTAACCAAACTGAACGCAGAGAAGGAGCGTTTGCGAAATGAACGAAGCTTGTACGTCCAATGTATAGAAAAGAAAACTACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG                                                                                                                                                                                                     ]


>consensus_5098#1 GATCCCCCCGCAGGTTAAAAGGAAAAAGAAGGAGAAGNCAAAAACAACTACAGAAGGAAA ACGGATACATTTAATCAGCAACCATCCCGAGCAGATTACCAAATCTTTCAACACACAGCA TAGTTCAACCGTTCAATAGTGAACTGTGAAAAGCTAAACTGCTAATAGAAAGGTAAAAAA GGAATAATTTTCTAAAACCTGTTCTACATCACACTCCTCCTTAAGCTCGTACCGTGGAGG AGAAGCAAAACACAACGTCAATGAAATAGAAAAGAAAAAAAAAACTACAAAGCCAATCTA ACCAAACTGAACGCACAGAAGGAGCGTTTGCGAAATGAACGAAGCTTGTACGTCCAATGT ATAGAAAAGAAAACTACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGA AGAAGAAGAACTAGTAAGAAACAAGCGTATAACATGTCGGGTGTTGCTTTGATGGTTACG TCTAAATGAAAGCTATAGATTTGTTTTAGAAACAAAACGTATAGATCCATCATTTCAGCA GCATAAACCACAAAACACGTTAAAAGCGATAAGCATGAAGAAAACAGTCAGTGTTAGTGT ATGCTGGGTGGAAGCT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5098#0      TTTTANTCNATAATTACGACCTTTGTTTAGTTTTATTTTCTCACGATTGTTTGTCAATTC 60
consensus_5098#1      ------------------------------------------------------------
                                                                                  

consensus_5098#0      GCTTTGTCGATTCGCTTTGGGGTTTGTTCACTTTACAGCAGTTTTATATAAACGTGTACA 120
consensus_5098#1      --------GATCCCCCCGCAGGTTAAAAGGAAAAAGAAGGAGAAGNCAAAAACAACTACA 52
                              *** * *     ****          * *          * ****   ****

consensus_5098#0      AGTATAAATGTAAATAAAACAAAACATT--CCATTAAAAACAGGAAACAATGTTAATGGG 178
consensus_5098#1      -GAAGGAAAACGGATACATTTAATCAGCAACCATCCCGAGCAGATTACCAAATCTTTCAA 111
                       * *  **     *** *   ** **    ****    * ***   ** *  *   *   

consensus_5098#0      CCTGC----TCGGCGAGCTGAAGAAGAGTAATGTGGGAAAGACATTGCCGCTTGCTTGCC 234
consensus_5098#1      CACACAGCATAGTTCAACCGTTCAATAGTGAACTGTGAAAAGCTAAACTGCT-AATAGAA 170
                      *   *    * *   * * *   ** *** *  ** ****  *    * ***   * *  

consensus_5098#0      CAGTCAACTATGTCTCTTGTCTTCTACGCACGGTTACACTTTCCGGTCCGGTTCCGTGTG 294
consensus_5098#1      AGGTAAAAAAGGAATA--ATTTTCTAAAACCTGTTCTACATCACACTCC---TCCTTAAG 225
                        ** **  * *  *    * *****    * ***  ** *  *  ***   *** *  *

consensus_5098#0      CTTATTGGTGGTATTGATTGGTTCGAATGTGTGTTTTTTTATATTCCTGTGCTTGGTTCG 354
consensus_5098#1      CTCGT--ACCGTGGAGGAGAAGCAAAACACAACGTCAATGAAATAGAAAAGAAAAAAAAA 283
                      **  *     **   *         **       *   * * **      *         

consensus_5098#0      GTTCGCTCTTTGTGCGTTTCCGGTGTTTCCTTTCGCTTTGTTGACTGTTATCGTAGCTTT 414
consensus_5098#1      ACT----------ACAAAGCCAATCTAACCAA--ACTGAACGCACAGA---AGGAGCGTT 328
                        *           *    **  * *  **     **      ** *     * *** **

consensus_5098#0      TATTCTATGAATTGTTCTTANAACTTGTTGTTTGTTTTGACGAGTGTTTGAATTGAGCTT 474
consensus_5098#1      TGCGAAATGAACGAAGCTTGTA-CGTCCAATGTATAGAAAAGAAAACTACAAG-AAGAAG 386
                      *     *****     ***  * * *    * * *    * **    *  **   **   

consensus_5098#0      CATATTTCTTCTTTTTTTTTTCTTCCAATGCAATGGTGCATTGTTTCGTTCGCAACAGTT 534
consensus_5098#1      AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACTAGTAAGAAACAAGC 446
                       * *                       * * *   *   *     * **  * ****   

consensus_5098#0      TAATAA-ATTTTAGTTGTTTTCCTGGNGGTTGTGCTTCTTTCAGCGCGCTTTTTGTATCT 593
consensus_5098#1      GTATAACATGTCGGGTGTTGCTTTGATGGTTACGTCTAAATGAAAGCTATAGATTTGTTT 506
                        **** ** *  * ****    **  ****  *  *   * *  **  *   * * * *

consensus_5098#0      AAACGAAGCAAAATATAGAAACTAAACCCTGCA--AGCTTCCACCAGCATACAC--TAAC 649
consensus_5098#1      TA--GAAACAAAACGTATAGATCCATCATTTCAGCAGCATAAACCACAAAACACGTTAAA 564
                       *  *** *****  ** * *   * *  * **  *** *  ****  * ****  *** 

consensus_5098#0      ACTGACTGGTTTCTTCATCTTA-CCGCTTTTAACGTGTTTTGNGGGTCATGCTGCTGAAA 708
consensus_5098#1      AGCGATAAGCATGAAGAAAACAGTCAGTGTTAGTGTATGCTGGGTGG-AAGCT------- 616
                      *  **   *  *    *    *  *  * ***  ** *  ** * *  * ***       

consensus_5098#0      TGATGAATCTATACGTTTTGTTTCTAAAA 737
consensus_5098#1      -----------------------------
                                                   




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)