These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5098#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 737 fasta sequence [TTTTANTCNATAATTACGACCTTTGTTTAGTTTTATTTTCTCACGATTGTTTGTCAATTCGCTTTGTCGATTCGCTTTGGGGTTTGTTCACTTTACAGCAGTTTTATATAAACGTGTACAAGTATAAATGTAAATAAAACAAAACATTCCATTAAAAACAGGAAACAATGTTAATGGGCCTGCTCGGCGAGCTGAAGAAGAGTAATGTGGGAAAGACATTGCCGCTTGCTTGCCCAGTCAACTATGTCTCTTGTCTTCTACGCACGGTTACACTTTCCGGTCCGGTTCCGTGTGCTTATTGGTGGTATTGATTGGTTCGAATGTGTGTTTTTTTATATTCCTGTGCTTGGTTCGGTTCGCTCTTTGTGCGTTTCCGGTGTTTCCTTTCGCTTTGTTGACTGTTATCGTAGCTTTTATTCTATGAATTGTTCTTANAACTTGTTGTTTGTTTTGACGAGTGTTTGAATTGAGCTTCATATTTCTTCTTTTTTTTTTCTTCCAA--TGCAATGGTGCATTGTTTCGTTCGCAACAGTTTAATAAATTTTAGTTGTTTTCCTGGNGGTTGTGCTTCTTTCAGCGCGCTTTTTGTATCTAAACGAAGCAAAATATAGAAACTAAACCCTGCAAGCTTCCACCAGCATACACTAACACTGACTGGTTTCTTCATCTTACCGCTTTTAACGTGTTTTGNGGGTCATGCTGCTGAAATGATGAATCTATACGTTTTGTTTCTAAAA] [+] EMBL BX624413 [TTTTANTCNATAATTACGACCTTTGTTTAGTTTTATTTTCTCACGATTGTTTGTCAATTCGCTTTGTCGATTCGCTTTGGGGTTTGTTCACTTTACAGCAGTTTTATATAAACGTGTACAAGTATAAATGTAAATAAAACAAAACATTCCATTAAAAACAGGAAACAATGTTAATGGGCCTGCTCGGCGAGCTGAAGAAGAGTAATGTGGGAAAGACATTGCCGCTTGCTTGCCCAGTCAACTATGTCTCTTGTCTTCTACGCACGGTTACACTTTCCGGTCCGGTTCCGTGTGCTTATTGGTGGTATTGATTGGTTCGAATGTGTGTTTTTTTATATTCCTGTGCTTGGTTCGGTTCGCTCTTTGTGCGTTTCCGGTGTTTCCTTTCGCTTTGTTGACTGTTATCGTAGCTTTTATTCTATGAATTGTTCTTANAACTTGTTGTTTGTTTTGACGAGTGTTTGAATTGAGCTTCATATTTCTTCTTTTTTTTTTCTTCCAA TGCAATGG ] [+] EMBL BX625176 [ ATTACGACCTTTGTTT CTTTTATTTTCTCACGATTGTTTGTCAATTCGCTTTGTCGATTCGCTTTGGGGTTTGTTCACTTTACAGCAGTTTTATATAAACGT TACAAGTATAAATGTAAATAAAACAAAACATTCCATTAAAAACAGGAAACAATGTTAATGGGCCTGCTCGGCGAGCTGAAGAAGAGTAATGTGGGAAAGACATTGCCGCTTGCTTGCCCAGTCAACTATGTCTCTTGTCTTCTACGCACGGTTACACTTTCCGGTCCGGTTCCGTGTGCTTATTGGTGGTATTGATTGGTTCGAATGTGTGTTTTTTTATATTCCTGTGCTTGGTTCGGTTCGCTCTTTGTGCGTTTCCGGTGTTTCCTTTCGCTTTGTTGACTGTTATCGTAGCTTTTATTCTATGAATTGTTCTTAGAACTTGTTGTTTGTTTTGACGAGTGTTTGAATTGAGCTTCATATTTCTTC TTTTTTTTTCTTCCCATGTGCCAT TGCATTGTTTCGTTCGCAACAGTTTAATAAATTTTAGTTGTTTTCCTGGNGGTTGTGCTTCTTTCAGCGCGCTTTTTGTATCTAAACGAAGCAAAATATAGAAACTAAACCCTGCAAGCTTCCACCAGCATACACTAACACTGACTGGTTTCTTCATCTTACCGCTTTTAACGTGTTTTGNGGGTCATGCTGCTGAAATGATGAATCTATACGTTTTGTTTCTAAAA] consensusID : consensus_5098#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 616 fasta sequence [GATCCCCCCGCAGGTTAAAAGGAAAAAGAAGGAGAAGNCAAAAACAACTACAGAAGGAAAACGGATACATTTAATCAGCAACCATCCCGAGCAGATTACCAAATCTTTCAACACACAGCATAGTTCAACCGTTCAATAGTGAACTGTGAAAAGCTAAACTGCTAATAGAAAGGTAAAAAAGGAATAATTTTCTAAAACCTGTTCTACATCACACTCCTCCTTAAGCTCGTACCGTGGAGGAGAAGCAAAACACAACGTCAATGAAATAGAAAAGAAAAAAAAAACTACAAAGCCAATCTAACCAAACTGAACGCACAGAAGGAGCGTTTGCGAAATGAACGAAGCTTGTACGTCCAATGTATAGAAAAGAAAACTACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACTAGTAAGAAACAAGCGTATAACATGTCGGGTGTTGCTTTGATGGTTACGTCTAAATGAAAGCTATAGATTTGTTTTAGAAACAAAACGTATAGATCCATCATTTCAGCAGCATAAACCACAAAACACGTTAAAAGCGATAAGCATGAAGAAAACAGTCAGTGTTAGTGTATGCTGGGTGGAAGCT] [+] EMBL AL692642 [GATCCCCCCGCAGGTTAAAAGGAAAAAGAAGGAGAAGNCAAAAACAACTACAGAAGGAAAACGGATACATTTAATCAGCAACCATCCCGAGCAGATTACCAAATCTTTCAACACACAGCATAGTTCAACCGTTCAATAGTGAACTGTGAAAAGCTAAACTGCTAATAGAAAGGTAAAAAAGGAATAATTTTCTAAAACCTGTTCTACATCACACTCCTCCTTAAGCTCGTACCGTGGAGGAGAAGCAAAACACAACGTCAATGAAATAGAAAAGAAAAAAAAAACTACAAAGCCAATCTAACCAAACTGAACGCACAGAAGGAGCGTTTGCGAAATGAACGAAGCTTGTACGTCCAATGTATAGAAAAGAAAACTACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACTAGTAAGAAACAAGCGTATAACATGTCGGGTGTTGCTTTGATGGTTACGTCTAAATGAAAGCTATAGATTTGTTTTAGAAACAAAACGTATAGATCCATCATTTCAGCAGCATAAACCACAAAACACGTTAAAAGCGATAAGCATGAAGAAAACAGTCAGTGTTAGTGTATGCTGGGTGGAAGCT] [+] EMBL BX619020 [ AATGAAATAGAAAAGAAAAAAAAAACTACAAAGCCAATCTAACCAAACTGAACGCAGAGAAGGAGCGTTTGCGAAATGAACGAAGCTTGTACGTCCAATGTATAGAAAAGAAAACTACAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5098#0 TTTTANTCNATAATTACGACCTTTGTTTAGTTTTATTTTCTCACGATTGTTTGTCAATTC 60 consensus_5098#1 ------------------------------------------------------------ consensus_5098#0 GCTTTGTCGATTCGCTTTGGGGTTTGTTCACTTTACAGCAGTTTTATATAAACGTGTACA 120 consensus_5098#1 --------GATCCCCCCGCAGGTTAAAAGGAAAAAGAAGGAGAAGNCAAAAACAACTACA 52 *** * * **** * * * **** **** consensus_5098#0 AGTATAAATGTAAATAAAACAAAACATT--CCATTAAAAACAGGAAACAATGTTAATGGG 178 consensus_5098#1 -GAAGGAAAACGGATACATTTAATCAGCAACCATCCCGAGCAGATTACCAAATCTTTCAA 111 * * ** *** * ** ** **** * *** ** * * * consensus_5098#0 CCTGC----TCGGCGAGCTGAAGAAGAGTAATGTGGGAAAGACATTGCCGCTTGCTTGCC 234 consensus_5098#1 CACACAGCATAGTTCAACCGTTCAATAGTGAACTGTGAAAAGCTAAACTGCT-AATAGAA 170 * * * * * * * ** *** * ** **** * * *** * * consensus_5098#0 CAGTCAACTATGTCTCTTGTCTTCTACGCACGGTTACACTTTCCGGTCCGGTTCCGTGTG 294 consensus_5098#1 AGGTAAAAAAGGAATA--ATTTTCTAAAACCTGTTCTACATCACACTCC---TCCTTAAG 225 ** ** * * * * ***** * *** ** * * *** *** * * consensus_5098#0 CTTATTGGTGGTATTGATTGGTTCGAATGTGTGTTTTTTTATATTCCTGTGCTTGGTTCG 354 consensus_5098#1 CTCGT--ACCGTGGAGGAGAAGCAAAACACAACGTCAATGAAATAGAAAAGAAAAAAAAA 283 ** * ** * ** * * * ** * consensus_5098#0 GTTCGCTCTTTGTGCGTTTCCGGTGTTTCCTTTCGCTTTGTTGACTGTTATCGTAGCTTT 414 consensus_5098#1 ACT----------ACAAAGCCAATCTAACCAA--ACTGAACGCACAGA---AGGAGCGTT 328 * * ** * * ** ** ** * * *** ** consensus_5098#0 TATTCTATGAATTGTTCTTANAACTTGTTGTTTGTTTTGACGAGTGTTTGAATTGAGCTT 474 consensus_5098#1 TGCGAAATGAACGAAGCTTGTA-CGTCCAATGTATAGAAAAGAAAACTACAAG-AAGAAG 386 * ***** *** * * * * * * * ** * ** ** consensus_5098#0 CATATTTCTTCTTTTTTTTTTCTTCCAATGCAATGGTGCATTGTTTCGTTCGCAACAGTT 534 consensus_5098#1 AAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAACTAGTAAGAAACAAGC 446 * * * * * * * * ** * **** consensus_5098#0 TAATAA-ATTTTAGTTGTTTTCCTGGNGGTTGTGCTTCTTTCAGCGCGCTTTTTGTATCT 593 consensus_5098#1 GTATAACATGTCGGGTGTTGCTTTGATGGTTACGTCTAAATGAAAGCTATAGATTTGTTT 506 **** ** * * **** ** **** * * * * ** * * * * * consensus_5098#0 AAACGAAGCAAAATATAGAAACTAAACCCTGCA--AGCTTCCACCAGCATACAC--TAAC 649 consensus_5098#1 TA--GAAACAAAACGTATAGATCCATCATTTCAGCAGCATAAACCACAAAACACGTTAAA 564 * *** ***** ** * * * * * ** *** * **** * **** *** consensus_5098#0 ACTGACTGGTTTCTTCATCTTA-CCGCTTTTAACGTGTTTTGNGGGTCATGCTGCTGAAA 708 consensus_5098#1 AGCGATAAGCATGAAGAAAACAGTCAGTGTTAGTGTATGCTGGGTGG-AAGCT------- 616 * ** * * * * * * *** ** * ** * * * *** consensus_5098#0 TGATGAATCTATACGTTTTGTTTCTAAAA 737 consensus_5098#1 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||