These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5103#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1103 fasta sequence [CCGCGATCGAGGACAAGACGAACGTGCTGGACCGGTTCGATCCCGAGATGGCGGAAACACTGGCGGAAGAGCGCAAAAAACGGCAGGAAATCGAAAAGGAGCTGGATCTTCAAGTATCGCTGAAAGCGGAA--ACGGAAATGGCCATGAAGCTGCTGGAGAAGGATATACACGAAAAGCAGGATACGATCGTGTCGCTGCGTCGCCAGCTCGAGGATATCAAGTCGATCAATCTCGACATGTACCGTAAGCTACAGGAGTGCGAAGCGTCGCTGAAGCACAAAACTGAGCTAATGTCGCGGATGGAAACGCAGCGCGAATCGATGGCCAGTGCAATTACGCAGCTGGAGAAAAAATACAGCTCGGAAACTGCGAGCCTGAACGCGTTGCAAGAATCCTCTCAGGCACTGTCGCTGCAAGTGATCGCCAGCGAGCAGCGAGCCGCCCGGGCCGAAGCAGATCTGCGCATCGAGCGCGAGTGGCGGACGGCTATGCAGGAGAAGGAAATGGAACACAAGGAAGCGATCAGCGATCTACAGCTGCAGGTGAAACAATTGATGGATGATTCCAAGCAACTCGGAAAAGCCAACGTAGAGCTGGAAAAGCTTCGCAGTCAGTGGGCCGAAGATCAGCGGACGCTGGAGGAGCTGGGCGTACAGCTGAGCGTCAGCAAGCTACAGATCTCGGGAGCTAAAAGAAAAAGGTGCCGGAGGAAGTCAGCNAAANGTTTCCGACCACAACCAAAGGGGGGACCGGGGGTNAATCCGGGTGTAAGGTGGCACTTGGCGGCAGGTTTGGACAACCGGGAATAANGGTCGTTCACNAATTGCACCCGGTTGCGAAGAAGGAGTTTAGGCATAACGCGCCAAANGCATTCAACCTGGGCGCGGAAAATTGTCTTGGGCAAAGGGATNTTTTGGGGCTTCCCAACGATTGGNTCNGGGAGGCACACTTTGNCCACACCCACTAAGGGGGGGAAACNCGGGTTTNTCCCCGCGGGAATNCACCANCAAGAAGNCACGGNGGAAACACCNGAACAGGGAAGGCNCNAAACACNAGTTCGCACGTTTTTGTGGACCACCATCAGGTTGGGNACACANTTTGCG] [+] EMBL BM610424 [CCGCGATCGAGGACAAGACGAACGTGCTGGACCGGTTCGATCCCGAGATGGCGGAAACACTGGCGGAAGAGCGCAAAAAACGGCAGGAAATCGAAAAGGAGCTGGATCTTCAAGTATCGCTGAAAGCGGAA ACGGAAATGGCCATGAAGCTGCTGGAGAAGGATATACACGAAAAGCAGGATACGATCGTGTCGCTGCGTCGCCAGCTCGAGGATATCAAGTCGATCAATCTCGACATGTACCGTAAGCTACAGGAGTGCGAAGCGTCGCTGAAGCACAAAACTGAGCTAATGTCGCGGATGGAAACGCAGCGCGAATCGATGGCCAGTGCAATTACGCAGCTGGAGAAAAAATACAGCTCGGAAACTGCGAGCCTGAACGCGTTGCAAGAATCCTCTCAGGCACTGTCGCTGCAAGTGATCGCCAGCGAGCAGCGAGCCGCCCGGGCCGAAGCAGATCTGCGCATCGAGCGCGAGTGGCGGACGGCTATGCAGGAGAAGGAAATGGAACACAAGGAAGCGATCAGCGATCTACAGCTGCAGGTGAAACAATTGATGGATGATTCCAAGCAACTCGGAAAAGCCAACGTAGAGCTGGAAAAG ] [+] EMBL BX467382 [ agAATCGGCACGAGGGAAATGGCCATGAAGCTGCTGGAGAAGGATATACACGAAAAGCAGGATACGATCGTGTCGCTGCGTCGCCAGCTCGAGGATATCAAATCGATCAATCTCGACATGTACCGTAAGCTACAGGAGTGCGAAGCGTCGCTGAAGCACAAAACTGAGCTAATGTCGCGGATGGAAACACAGCGCGAATCGATGGCCAGTGCAATTACGCAGCTGGAGAAAAAATACAGCTCGGAAACTGCGAGCCTGAACGCGTTGCAAGAATCCTCTCAGGCACTGTCGCTGCAAGTGATCGCCAGCGAGCAGCGAGCCGCCCGGGCCGAAGCAGATCTGCGCATCGAGCGCGAGTGGCGGACGGCTATGCAGGAGAAGGAAATGGAACACAAGGAAGCGATCAGCGATCTGCAGCTGCAGGTGAAACAATTGATGGATGATTCCAAGCAACTCGGAAAAGCCAACGTAGAGCTGGAAAAGCTTCGCAGTCAGTGGGCCGAAGATCAGCGGACGCTGGAGGAGCTGGGCGTACAGCTGAGCGTCAGCAAGCTACAGATCTCGGGAGCTAAAAGAAAAAGGTGCCGGAGGAAGTCAGCNAAANGTTTCCGACCACAACCAAAGGGGGGACCGGGGGTNAATCCGGGTGTAAGGTGGCACTTGGCGGCAGGTTTGGACAACCGGGAATAANGGTCGTTCACNAATTGCACCCGGTTGCGAAGAAGGAGTTTAGGCATAACGCGCCAAANGCATTCAACCTGGGCGCGGAAAATTGTCTTGGGCAAAGGGATNTTTTGGGGCTTCCCAACGATTGGNTCNGGGAGGCACACTTTGNCCACACCCACTAAGGGGGGGAAACNCGGGTTTNTCCCCGCGGGAATNCACCANCAAGAAGNCACGGNGGAAACACCNGAACAGGGAAGGCNCNAAACACNAGTTCGCACGTTTTTGTGGACCACCATCAGGTTGGGNACACANTTTGCG] consensusID : consensus_5103#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence [TGAGCGAAAAAGGGTGTTTATAAACTAACTTATGTATACACCAACATCCACTTCCACCCCATATATTCTTATTGTAGGAGTGCGAAGCGTCGCTGAAGCACAAAACTGAGCTAATGTCGCGGATGGAAACACAGCGCGAATCGATGGCCAGTGCAATTACGCAGCTGGAGAAAAAGTACGCAAACCAAACTATATTTCTATGTTCTTATTGCTACGTTAATTTACCAAGTAGACTTAATAACGATGCCTTTTGCTGCCTAACTTACTGTCTAACCTATCATTATGCAGTATGCTCTTAACCCGACGGTAAAGTACCACAGTTGAATTGAGTTCTTGCCTCCTGAAGTCCTAAATAATAATTCGCTACAACGTATTAACTGCCGTAGCTTACACCGTAGTTTCTGTTCTGAACCACCAGAATGGTCATCTGTCAATAAAGTTCATTGTGTTACGATTGTACGAGAAATATAAATAAAAATGAAAACCACACTTTTATTTATTCCATAAATCCTGTAGCGAGAGTTGTGTGATCGATTGACAAATATGTAAAACGAAGCGCTTTTACAGCAATTAATAGCAGTATCTATTGTTGTTTTTTTCCGTTATTGGGATAGATAACCGAAACA] [+] EMBL BX611851 [TGAGCGAAAAAGGGTGTTTATAAACTAACTTATGTATACACCAACATCCACTTCCACCCCATATATTCTTATTGTAGGAGTGCGAAGCGTCGCTGAAGCACAAAACTGAGCTAATGTCGCGGATGGAAACACAGCGCGAATCGATGGCCAGTGCAATTACGCAGCTGGAGAAAAAGTACGCAAACCAAACTATATTTCTATGTTCTTATTGCTACGTTAATTTACCAAGTAGACTTAATAACGATGCCTTTTGCTGCCTAACTTACTGTCTAACCTATCATTATGCAGTATGCTCTTAACCCGACGGTAAAGTACCACAGTTGAATTGAGTTCTTGCCTCCTGAAGTCCTAAATAATAATTCGCTACAACGTATTAACTGCCGTAGCTTACACCGTAGTTTCTGTTCTGAACCACCAGAATGGTCATCTGTCAATAAAGTTCATTGTGTTACGATTGTACGAGAAATATAAATAAAAATGAAAACCACACTTTTATTTATTCCATAAATCCTGTAGCGAGAGTTGTGTGATCGATTGACAAATATGTAAAACGAAGCGCTTTTACAGCAATTAATAGCAGTATCTATTGTTGTTTTTTTCCGTTATTGGGATAGATAACCGAAACA] consensusID : consensus_5103#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 563 fasta sequence [AATCCCCCGAGGTTTACGTGTGGCGAACTGCAGGCTAAGGTTGAATCACTCACCACGACCAACGCGCTCATGAAGGAAGATTTGGCAATCGCACGGAACAGCCTAATGGCGCTGCAGGCCGAAAATGCTGCCCTCCGAAGGGCGTCCCAGCATGGGCACCCGATCGAGGACAAGACGAACGTGCTGGACCGGTTCGATCCCGAGATGGCGGAAACACTGGCGGAAGAGCGCAAAAAACGGCAGGAAATCGAAAAGGAGCTGGATCTTCAAGTATCGCTGAAAGCGGAAACGGAAATGGCCATGAAGCTGCTGGAGAAGGATATACACGAAAAGCAGGATACGATCGTGTCGCTGCGTCGCCAGCTCGAGGATATCAAGTCGATCAATCTCGACATGTACCGTAAGCTACAGGTAATATCAGGGCTTATGGGTATGGAAACTATGGGGTTACACAGGTTTGTATCACGAATTACTTCCAATGAATTTGGATCATTCGGGGCGAGATTGTCATTTCTTCCTTGGTTAAATTCGTTCTCGGGGCATCTGGTGGTCTTGTGAAAGGA] [+] EMBL AL692884 [AATCCCCCGAGGTTTACGTGTGGCGAACTGCAGGCTAAGGTTGAATCACTCACCACGACCAACGCGCTCATGAAGGAAGATTTGGCAATCGCACGGAACAGCCTAATGGCGCTGCAGGCCGAAAATGCTGCCCTCCGAAGGGCGTCCCAGCATGGGCACCCGATCGAGGACAAGACGAACGTGCTGGACCGGTTCGATCCCGAGATGGCGGAAACACTGGCGGAAGAGCGCAAAAAACGGCAGGAAATCGAAAAGGAGCTGGATCTTCAAGTATCGCTGAAAGCGGAAACGGAAATGGCCATGAAGCTGCTGGAGAAGGATATACACGAAAAGCAGGATACGATCGTGTCGCTGCGTCGCCAGCTCGAGGATATCAAGTCGATCAATCTCGACATGTACCGTAAGCTACAGGTAATATCAGGGCTTATGGGTATGGAAACTATGGGGTTACACAGGTTTGTATCACGAATTACTTCCAATGAATTTGGATCATTCGGGGCGAGATTGTCATTTCTTCCTTGGTTAAATTCGTTCTCGGGGCATCTGGTGGTCTTGTGAAAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5103#0 ------------------------------------------------------------ consensus_5103#2 AATCCCCCGAGGTTTACGTGTGGCGAACTGCAGGCTAAGGTTGAATCACTCACCACGACC 60 consensus_5103#1 ------------------------------------------------------------ consensus_5103#0 ------------------------------------------------------------ consensus_5103#2 AACGCGCTCATGAAGGAAGATTTGGCAATCGCACGGAACAGCCTAATGGCGCTGCAGGCC 120 consensus_5103#1 ------------------------------------------------------------ consensus_5103#0 -------------------------------------CCGCGATCGAGGACAAGACGAAC 23 consensus_5103#2 GAAAATGCTGCCCTCCGAAGGGCGTCCCAGCATGGGCACCCGATCGAGGACAAGACGAAC 180 consensus_5103#1 ------------------------------------------------------------ consensus_5103#0 GTGCTGGACCGGTTCGATCCCGAGATGGCGGAAACACTGGCGGAAGAGCGCAAAAAACGG 83 consensus_5103#2 GTGCTGGACCGGTTCGATCCCGAGATGGCGGAAACACTGGCGGAAGAGCGCAAAAAACGG 240 consensus_5103#1 ------------------------------------------------------------ consensus_5103#0 CAGGAAATCGAAAAGGAGCTGGATCTTCAAGTATCGCTGAAAGCGGAAACGGAAATGGCC 143 consensus_5103#2 CAGGAAATCGAAAAGGAGCTGGATCTTCAAGTATCGCTGAAAGCGGAAACGGAAATGGCC 300 consensus_5103#1 ------------------------------------------------------------ consensus_5103#0 ATGAAGCTGCTGGAGAAGGATATACACGAAAAGCAGGATACGATCGTGTCGCTGCGTCGC 203 consensus_5103#2 ATGAAGCTGCTGGAGAAGGATATACACGAAAAGCAGGATACGATCGTGTCGCTGCGTCGC 360 consensus_5103#1 -----------------------------TGAGCGAAAAAGG---GTGTTTATAA---AC 25 *** * * * **** * * consensus_5103#0 CAGCTCGAGGATATCAAGTCGATCAATCTCGAC--ATGTACCGTAAGCTACAGG-AGTGC 260 consensus_5103#2 CAGCTCGAGGATATCAAGTCGATCAATCTCGAC--ATGTACCGTAAGCTACAGGTAATAT 418 consensus_5103#1 TAACTTATGTATACACCAACATCCACTTCCACCCCATATATTCTTA-TTGTAGG-AGTGC 83 * ** * *** * ** * * * ** ** * * * *** * * consensus_5103#0 GAAGCGTCGCTGAAGCACAAAACTGAGCTAATGTCGCGGATGGAAACGCAGCGCGAATCG 320 consensus_5103#2 CAGGGCTTATGGGTATG-GAAACTA---TGGGGTTAC--ACAGGTTTGTATCACGAATT- 471 consensus_5103#1 GAAGCGTCGCTGAAGCACAAAACTGAGCTAATGTCGCGGATGGAAACACAGCGCGAATCG 143 * * * * ***** * ** * * * * * ***** consensus_5103#0 ATGGCCAGTGCAATTACGCAGCTGGAGAAAAAATACAGCTCGGAAACTGCGAGCCTGAAC 380 consensus_5103#2 ACTTCCAATGAATTTGGATCATTCGGGGCGAGATTG---TCATTTCTTCCTTGGTTAAAT 528 consensus_5103#1 ATGGCCAGTGCAATTACGCAGCTGGAGAAAAAGTACGCAAACCAAACTATATTTCTATGT 203 * *** ** * ** * * * * * * * consensus_5103#0 GCGTTGCAAGAATCCTCTCAGGCACTGTCGCTGCAAGTGATCGCCAGCGAGCAGCGAGCC 440 consensus_5103#2 TCGTTCTCGGGGCATCTGGTGGTCTTGTGAAAGGA------------------------- 563 consensus_5103#1 TC-TTATTGCTACGTTAATTTACCAAGTAGACTTAATAACGATGCCTTTTGCTGCCTAAC 262 * ** ** * consensus_5103#0 GCCCGGGCCGAAGCAGATCTGCGCATCGAGCGCGAGTGGCGGACGGCTATGCAGGAGAAG 500 consensus_5103#2 ------------------------------------------------------------ consensus_5103#1 TTACTGTCTAACCTATCATTATGCAGTATGCTCTTA-ACCCGACGGTAAAGTACCACAGT 321 consensus_5103#0 GAAATGGAACACAAGGAAGCGATCAGCGATCTACAGCTGCAGGTGAAACAATTGATGGAT 560 consensus_5103#2 ------------------------------------------------------------ consensus_5103#1 TGAATTGAGTTCTTGC---CTCCTGAAGTCCTAAATAATAATTCGCTACAACGTATTAAC 378 consensus_5103#0 GATTCCAAGCAACTCGGAAAAGCCAACGTAGAGCTGGAAAAGCTTCGCAGTCAGTGGGCC 620 consensus_5103#2 ------------------------------------------------------------ consensus_5103#1 TGCCGTAGCTTACACCGTAGTTTCTGTTCTGAACCACCAGAA--TGGTCATCTGTCAAT- 435 consensus_5103#0 GAAGATCAGCGGACGCTGGAGGAGCTGGGCGTACAGCTGAGCGTCAGCAAGCTACAGATC 680 consensus_5103#2 ------------------------------------------------------------ consensus_5103#1 AAAGTTCATTGTGTTACGATTGTACGAGAAATATAAATAAAAATGA--AAACCACACTTT 493 consensus_5103#0 TCGGGAGCTAAAAGAAAAAGGTGCCGGAGGAA-GTCAGCNAAANGTTTCCGACCACAACC 739 consensus_5103#2 ------------------------------------------------------------ consensus_5103#1 TATTTATTCCATAAATCCTGTAGCGAGAGTTGTGTGATCGATTGACAAATATGTAAAACG 553 consensus_5103#0 AAAGGGGGGACCGGGGGTNAATCCGGGTGTAAGGTGGCACTTGGCGGCAG-GTTTGGACA 798 consensus_5103#2 ------------------------------------------------------------ consensus_5103#1 AAGCGCTTTTACAGCAATTAATAGCAGTATCTATTGTTGTTTTTTTCCGTTATTGGGATA 613 consensus_5103#0 ACCGGGAATAANGGTCGTTCACNAATTGCACCCGGTTGCGAAGAAGGAGTTTAGGCATAA 858 consensus_5103#2 ------------------------------------------------------------ consensus_5103#1 GATAACCGAAACA----------------------------------------------- 626 consensus_5103#0 CGCGCCAAANGCATTCAACCTGGGCGCGGAAAATTGTCTTGGGCAAAGGGATNTTTTGGG 918 consensus_5103#2 ------------------------------------------------------------ consensus_5103#1 ------------------------------------------------------------ consensus_5103#0 GCTTCCCAACGATTGGNTCNGGGAGGCACACTTTGNCCACACCCACTAAGGGGGGGAAAC 978 consensus_5103#2 ------------------------------------------------------------ consensus_5103#1 ------------------------------------------------------------ consensus_5103#0 NCGGGTTTNTCCCCGCGGGAATNCACCANCAAGAAGNCACGGNGGAAACACCNGAACAGG 1038 consensus_5103#2 ------------------------------------------------------------ consensus_5103#1 ------------------------------------------------------------ consensus_5103#0 GAAGGCNCNAAACACNAGTTCGCACGTTTTTGTGGACCACCATCAGGTTGGGNACACANT 1098 consensus_5103#2 ------------------------------------------------------------ consensus_5103#1 ------------------------------------------------------------ consensus_5103#0 TTGCG 1103 consensus_5103#2 ----- consensus_5103#1 ----- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||