cluster # 5104

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5104 cluster # 5104 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5104#0 length = 1333 sequences # 2

consensus_5104#1 length = 215 sequences # 1
consensus_5104#2 length = 182 sequences # 1

consensusID : consensus_5104#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1333
fasta sequence

                              [GATCAAAGGCTTATCGATGGGTGATTTCGGCAATTATCGGTGCATATCCAAGAACTCGCTCGGTGAAACGGAGGGTTCCATTCGCGTTTACGAAATCCCACTTCCATCAACACCATCGAAGCAAATTACTCACGTGATGGAGCCGAAAGAGACGATCCCAGCCGTGGTGTCACGTAATGAAACCATTAAGGTCGCCAGCCAACCTGAGGTCCTGTTTCCGATGAAGAACGACGAAGGCTACGCTCAACGCTCACCGAACGGGATCCCTTTCGAGCGCAAGGGATCGCTTGCCATCGGGCAAAGTTTCTCCTACACCGACATGCCACCGAAAGAGTTCGGTGTATCTAATGATGCTCGCAGTAGCTTCGGAGTGTTCTCGCTGCTATCGCTGACGACGAGTGTGGTGCAATCGACACTGATAGTTCTGTGCCATCAGCATTGCGAGAGCTGGCTGTTACTGTAATTTGCAATTAATCGAGTGCAAGAAGACGAGTAACAAAAGAGAGAGAGAGAGTCGGGAGAGCTGCAATTCTTTCGCTTCCATTCAGCCAGAAGCTGTGACAGTTCCGTGAGGCGGACGACACATCTGCAGCACGAACACGGTCCCAGTCGGTGGTGCGGTCGCGCATATCATATGTTCGTTGCTCATATCACTCCCCTGCCATGGAGATACATATCCTTTCCTTGTGGGACTGATGGGATAATAAAACACGATGGTCACGTAAGGCTAAGCGCAATCCTGTAACATAAATTAAATTTCACCATGTTCTGCTTAACGGATAATGGACGCAGCTGAAATAAACAATAAGTAGGTTACCAATCATGCTCTTGTGTTCGATTTCGATTATTTCGTTGCGCTCTCTCATCAGCATAAGCTTTCGGAAATTGTTATATATAAACAAAACAAACTCTATTAATCAGCTTAAAAAAGAGACTGTACATTGTTTGTTCAGTGATTGCGCCCTGTTTTTTGGTTCATGCTTCCTAATATGTTTTGTAAACTATGTCTAGCAGCTTAGTTATCGCATTTTTTTTCCTAACACAAAACACTGTTCTAAACTAGGAAAGATTGTAGCAGGACGTTGTATAATAGCAAAATGGCTTAGCTCTTTGTCGAGTTCGTTAACTATAGTATGGTCAGTCGGAAGTGAATAAACAAATGGCTAGCGTAAGGATGATTTATCCTTTATTGGCAATTAAGAAACGCAAACGTTTTACAGATAAAAGTTGCAAAATGAATCAGTTAAAAGATGTAAAATGGGACAGCACGAGCACGGAATAAAGCAAAATGCAAACGCATAGTGTGTACATATTGTAGCCCAACTTAAGCTGT]

[+] EMBL BX612540             [GATCAAAGGCTTATCGATGGGTGATTTCGGCAATTATCGGTGCATATCCAAGAACTCGCTCGGTGAAACGGAGGGTTCCATTCGCGTTTACGAAATCCCACTTCCATCAACACCATCGAAGCAAATTACTCACGTGATGGAGCCGAAAGAGACGATCCCAGCCGTGGTGTCACGTAATGAAACCATTAAGGTCGCCAGCCAACCTGAGGTCCTGTTTCCGATGAAGAACGACGAAGGCTACGCTCAACGCTCACCGAACGGGATCCCTTTCGAGCGCAAGGGATCGCTTGCCATCGGGCAAAGTTTCTCCTACACCGACATGCCACCGAAAGAGTTCGGTGTATCTAATGATGCTCGCAGTAGCTTCGGAGTGTTCTCGCTGCTATCGCTGACGACGAGTGTGGTGCAATCGACACTGATAGTTCTGTGCCATCAGCATTGCGAGAGCTGGCTGTTACTGTAATTTGCAATTAATCGAGTGCAAGAAGACGAGTAACAAAAGAGAGAGAGAGAGTCGGGAGAGCTGCAATTCTTTCGCTTCCATTCAGCCAGAAGCTGTGACAGTTCCGTGAGGCGGACGACACATCTGCAGCACGAACACGGTCCCAGTCGGTGGTGCGGTCGCGCATATCATATGTTCGTTGCTCATATCACTCCCCTGCCATGGAGATACATATCCTTTCCTTGTGGGACTGATGGGATAATAAAACACGATGGTCACGTAAGGCTAAGCGCAATCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 ]
[+] EMBL BX617845             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CGACACATCTGCAGCACGAACACGGTCCCAGTCGGTGGTGCGGTCGCGCATATCATATGTTCGTTGCTCATATCACTCCCCTGCCATGGAGATACATATCCTTTCCTTGTGGGACTGATGGGATAAT AAACACGATGGTCACGTAAGGCTAAGCGCAATCCTGTAACATAAATTAAATTTCACCATGTTCTGCTTAACGGATAATGGACGCAGCTGAAATAAACAATAAGTAGGTTACCAATCATGCTCTTGTGTTCGATTTCGATTATTTCGTTGCGCTCTCTCATCAGCATAAGCTTTCGGAAATTGTTATATATAAACAAAACAAACTCTATTAATCAGCTTAAAAAAGAGACTGTACATTGTTTGTTCAGTGATTGCGCCCTGTTTTTTGGTTCATGCTTCCTAATATGTTTTGTAAACTATGTCTAGCAGCTTAGTTATCGCATTTTTTTTCCTAACACAAAACACTGTTCTAAACTAGGAAAGATTGTAGCAGGACGTTGTATAATAGCAAAATGGCTTAGCTCTTTGTCGAGTTCGTTAACTATAGTATGGTCAGTCGGAAGTGAATAAACAAATGGCTAGCGTAAGGATGATTTATCCTTTATTGGCAATTAAGAAACGCAAACGTTTTACAGATAAAAGTTGCAAAATGAATCAGTTAAAAGATGTAAAATGGGACAGCACGAGCACGGAATAAAGCAAAATGCAAACGCATAGTGTGTACATATTGTAGCCCAACTTAAGCTGT]




>consensus_5104#0
GATCAAAGGCTTATCGATGGGTGATTTCGGCAATTATCGGTGCATATCCAAGAACTCGCT
CGGTGAAACGGAGGGTTCCATTCGCGTTTACGAAATCCCACTTCCATCAACACCATCGAA
GCAAATTACTCACGTGATGGAGCCGAAAGAGACGATCCCAGCCGTGGTGTCACGTAATGA
AACCATTAAGGTCGCCAGCCAACCTGAGGTCCTGTTTCCGATGAAGAACGACGAAGGCTA
CGCTCAACGCTCACCGAACGGGATCCCTTTCGAGCGCAAGGGATCGCTTGCCATCGGGCA
AAGTTTCTCCTACACCGACATGCCACCGAAAGAGTTCGGTGTATCTAATGATGCTCGCAG
TAGCTTCGGAGTGTTCTCGCTGCTATCGCTGACGACGAGTGTGGTGCAATCGACACTGAT
AGTTCTGTGCCATCAGCATTGCGAGAGCTGGCTGTTACTGTAATTTGCAATTAATCGAGT
GCAAGAAGACGAGTAACAAAAGAGAGAGAGAGAGTCGGGAGAGCTGCAATTCTTTCGCTT
CCATTCAGCCAGAAGCTGTGACAGTTCCGTGAGGCGGACGACACATCTGCAGCACGAACA
CGGTCCCAGTCGGTGGTGCGGTCGCGCATATCATATGTTCGTTGCTCATATCACTCCCCT
GCCATGGAGATACATATCCTTTCCTTGTGGGACTGATGGGATAATAAAACACGATGGTCA
CGTAAGGCTAAGCGCAATCCTGTAACATAAATTAAATTTCACCATGTTCTGCTTAACGGA
TAATGGACGCAGCTGAAATAAACAATAAGTAGGTTACCAATCATGCTCTTGTGTTCGATT
TCGATTATTTCGTTGCGCTCTCTCATCAGCATAAGCTTTCGGAAATTGTTATATATAAAC
AAAACAAACTCTATTAATCAGCTTAAAAAAGAGACTGTACATTGTTTGTTCAGTGATTGC
GCCCTGTTTTTTGGTTCATGCTTCCTAATATGTTTTGTAAACTATGTCTAGCAGCTTAGT
TATCGCATTTTTTTTCCTAACACAAAACACTGTTCTAAACTAGGAAAGATTGTAGCAGGA
CGTTGTATAATAGCAAAATGGCTTAGCTCTTTGTCGAGTTCGTTAACTATAGTATGGTCA
GTCGGAAGTGAATAAACAAATGGCTAGCGTAAGGATGATTTATCCTTTATTGGCAATTAA
GAAACGCAAACGTTTTACAGATAAAAGTTGCAAAATGAATCAGTTAAAAGATGTAAAATG
GGACAGCACGAGCACGGAATAAAGCAAAATGCAAACGCATAGTGTGTACATATTGTAGCC
CAACTTAAGCTGT

consensusID : consensus_5104#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 215
fasta sequence

                              [CGCGGACGACGAGGGGGGTGCAATCGACACAGAGAGTCCGGTGCCATCAGCATAGCGAGAGCGGGCGGTTACTGTAATTTGCAAGTAATCGAGGGCAAGAAGACGAGTAACAAAAGAGAGAGAGAGAGTCGGGAGAGCGGCAAATCTTTCGCTTCCATTCAGCCAGAAGCTGTGACAGTCCCGCGAGGCGGACGACACATCTGCAGCACGAACAC]

[+] EMBL BX607917             [CGCGGACGACGAGGGGGGTGCAATCGACACAGAGAGTCCGGTGCCATCAGCATAGCGAGAGCGGGCGGTTACTGTAATTTGCAAGTAATCGAGGGCAAGAAGACGAGTAACAAAAGAGAGAGAGAGAGTCGGGAGAGCGGCAAATCTTTCGCTTCCATTCAGCCAGAAGCTGTGACAGTCCCGCGAGGCGGACGACACATCTGCAGCACGAACAC]




>consensus_5104#1
CGCGGACGACGAGGGGGGTGCAATCGACACAGAGAGTCCGGTGCCATCAGCATAGCGAGA
GCGGGCGGTTACTGTAATTTGCAAGTAATCGAGGGCAAGAAGACGAGTAACAAAAGAGAG
AGAGAGAGTCGGGAGAGCGGCAAATCTTTCGCTTCCATTCAGCCAGAAGCTGTGACAGTC
CCGCGAGGCGGACGACACATCTGCAGCACGAACAC

consensusID : consensus_5104#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 182
fasta sequence

                              [GTCAGTCGGAAGTGAATAAAGAAATGGCGAGCGTAAGGATGAAAAACCCCCAAAGGGCAATTAAGAAACGCAAACGTTTTACAGAAAAAAGTTGCAAAATGAACCAGGAAAAAGAAGTAAAAAGGGATAGCACGAGCACGGAATAAAGCAAAAGGCAAACGCAAAGGGGGGACATATTTTAG]

[+] EMBL BX613219             [GTCAGTCGGAAGTGAATAAAGAAATGGCGAGCGTAAGGATGAAAAACCCCCAAAGGGCAATTAAGAAACGCAAACGTTTTACAGAAAAAAGTTGCAAAATGAACCAGGAAAAAGAAGTAAAAAGGGATAGCACGAGCACGGAATAAAGCAAAAGGCAAACGCAAAGGGGGGACATATTTTAG]




>consensus_5104#2
GTCAGTCGGAAGTGAATAAAGAAATGGCGAGCGTAAGGATGAAAAACCCCCAAAGGGCAA
TTAAGAAACGCAAACGTTTTACAGAAAAAAGTTGCAAAATGAACCAGGAAAAAGAAGTAA
AAAGGGATAGCACGAGCACGGAATAAAGCAAAAGGCAAACGCAAAGGGGGGACATATTTT
AG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5104#0      GATCAAAGGCTTATCGATGGGTGATTTCGGCAATTATCGGTGCATATCCAAGAACTCGCT 60
consensus_5104#1      ------------------------------------------------------------
consensus_5104#2      ------------------------------------------------------------
                                                                                  

consensus_5104#0      CGGTGAAACGGAGGGTTCCATTCGCGTTTACGAAATCCCACTTCCATCAACACCATCGAA 120
consensus_5104#1      ------------------------------------------------------------
consensus_5104#2      ------------------------------------------------------------
                                                                                  

consensus_5104#0      GCAAATTACTCACGTGATGGAGCCGAAAGAGACGATCCCAGCCGTGGTGTCACGTAATGA 180
consensus_5104#1      ------------------------------------------------------------
consensus_5104#2      ------------------------------------------------------------
                                                                                  

consensus_5104#0      AACCATTAAGGTCGCCAGCCAACCTGAGGTCCTGTTTCCGATGAAGAACGACGAAGGCTA 240
consensus_5104#1      ------------------------------------------------------------
consensus_5104#2      ------------------------------------------------------------
                                                                                  

consensus_5104#0      CGCTCAACGCTCACCGAACGGGATCCCTTTCGAGCGCAAGGGATCGCTTGCCATCGGGCA 300
consensus_5104#1      ------------------------------------------------------------
consensus_5104#2      ------------------------------------------------------------
                                                                                  

consensus_5104#0      AAGTTTCTCCTACACCGACATGCCACCGAAAGAGTTCGGTGTATCTAATGATGCTCGCAG 360
consensus_5104#1      ------------------------------------------------------------
consensus_5104#2      ------------------------------------------------------------
                                                                                  

consensus_5104#0      TAGCTTCGGAGTGTTCTCGCTGCTATCGCTGACGACGAGTGTGGTGCAATCGACACTGAT 420
consensus_5104#1      --------------------------CGCGGACGACGAGGGGGGTGCAATCGACACAGAG 34
consensus_5104#2      --------------------------------------GTCAGTCGGAAGTGA-ATAAAG 21
                                                            *   *  * **  ** *   * 

consensus_5104#0      AGTTCTGTGCCATCAGCATTGCGAGAGC--TGGCTGTTACTGTAATTTGCAATTAATCGA 478
consensus_5104#1      AGTCCGGTGCCATCAGCATAGCGAGAGC--GGGCGGTTACTGTAATTTGCAAGTAATCGA 92
consensus_5104#2      AAATGGCGAGCGTAAGGATGAAAAACCCCCAAAGGGCAATTAAGAAACGCAAACGTTTTA 81
                      *         * * ** **    *   *       *  * *   *   ****    *  *

consensus_5104#0      GTGCAAGAAGACGAGTAACAAAAGAGAGAGAGAGAGTCGGGAGAGCTGCAATTCTTTCGC 538
consensus_5104#1      GGGCAAGAAGACGAGTAACAAAAGAGAGAGAGAGAGTCGGGAGAGCGGCAAATCTTTCGC 152
consensus_5104#2      CAGAAAAAAGTTGCAAAATGAACCAGGAAAAAGAAGTAAAAAGGG----ATAGCACGAGC 137
                        * ** ***  *   **  **  **  * *   ***    ** *    *   *    **

consensus_5104#0      TTCCATTCAGCCAGAAGCTGTGACAGTTCCGTGAGGCGGACGACACATCTGCAGCACGAA 598
consensus_5104#1      TTCCATTCAGCCAGAAGCTGTGACAGTCCCGCGAGGCGGACGACACATCTGCAGCACGAA 212
consensus_5104#2      ACGGAATAAAGCAAAAG-----GCAAACGCAAAGGGGGGAC-ATATTTTAG--------- 182
                          * * *  ** ***      **    *    ** **** * *  *  *         

consensus_5104#0      CACGGTCCCAGTCGGTGGTGCGGTCGCGCATATCATATGTTCGTTGCTCATATCACTCCC 658
consensus_5104#1      CAC--------------------------------------------------------- 215
consensus_5104#2      ------------------------------------------------------------
                                                                                  

consensus_5104#0      CTGCCATGGAGATACATATCCTTTCCTTGTGGGACTGATGGGATAATAAAACACGATGGT 718
consensus_5104#1      ------------------------------------------------------------
consensus_5104#2      ------------------------------------------------------------
                                                                                  

consensus_5104#0      CACGTAAGGCTAAGCGCAATCCTGTAACATAAATTAAATTTCACCATGTTCTGCTTAACG 778
consensus_5104#1      ------------------------------------------------------------
consensus_5104#2      ------------------------------------------------------------
                                                                                  

consensus_5104#0      GATAATGGACGCAGCTGAAATAAACAATAAGTAGGTTACCAATCATGCTCTTGTGTTCGA 838
consensus_5104#1      ------------------------------------------------------------
consensus_5104#2      ------------------------------------------------------------
                                                                                  

consensus_5104#0      TTTCGATTATTTCGTTGCGCTCTCTCATCAGCATAAGCTTTCGGAAATTGTTATATATAA 898
consensus_5104#1      ------------------------------------------------------------
consensus_5104#2      ------------------------------------------------------------
                                                                                  

consensus_5104#0      ACAAAACAAACTCTATTAATCAGCTTAAAAAAGAGACTGTACATTGTTTGTTCAGTGATT 958
consensus_5104#1      ------------------------------------------------------------
consensus_5104#2      ------------------------------------------------------------
                                                                                  

consensus_5104#0      GCGCCCTGTTTTTTGGTTCATGCTTCCTAATATGTTTTGTAAACTATGTCTAGCAGCTTA 1018
consensus_5104#1      ------------------------------------------------------------
consensus_5104#2      ------------------------------------------------------------
                                                                                  

consensus_5104#0      GTTATCGCATTTTTTTTCCTAACACAAAACACTGTTCTAAACTAGGAAAGATTGTAGCAG 1078
consensus_5104#1      ------------------------------------------------------------
consensus_5104#2      ------------------------------------------------------------
                                                                                  

consensus_5104#0      GACGTTGTATAATAGCAAAATGGCTTAGCTCTTTGTCGAGTTCGTTAACTATAGTATGGT 1138
consensus_5104#1      ------------------------------------------------------------
consensus_5104#2      ------------------------------------------------------------
                                                                                  

consensus_5104#0      CAGTCGGAAGTGAATAAACAAATGGCTAGCGTAAGGATGATTTATCCTTTATTGGCAATT 1198
consensus_5104#1      ------------------------------------------------------------
consensus_5104#2      ------------------------------------------------------------
                                                                                  

consensus_5104#0      AAGAAACGCAAACGTTTTACAGATAAAAGTTGCAAAATGAATCAGTTAAAAGATGTAAAA 1258
consensus_5104#1      ------------------------------------------------------------
consensus_5104#2      ------------------------------------------------------------
                                                                                  

consensus_5104#0      TGGGACAGCACGAGCACGGAATAAAGCAAAATGCAAACGCATAGTGTGTACATATTGTAG 1318
consensus_5104#1      ------------------------------------------------------------
consensus_5104#2      ------------------------------------------------------------
                                                                                  

consensus_5104#0      CCCAACTTAAGCTGT 1333
consensus_5104#1      ---------------
consensus_5104#2      ---------------