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Anopheles gambiae
cluster # 5105 cluster # 5105       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5105#0 length = 973 sequences # 1  
consensus_5105#1 length = 904 sequences # 3  

consensusID : consensus_5105#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 973
fasta sequence
                              [CCGAGGTTTATTGCTGGAATGGGNGCCTGTAAAAACAGGTCAGCAATTGTTTGTAAAGCCTGAAACAAACCACAATCTGACGTGTGTGTGGTGAGATGCNNAAAGACCAGAACTGAAACCACGGCACTGATGTATGTAGCAAACAAATAGCAGGCTTGCTAGACTANCATTATTGTAAGCAGGAAAGCAAGACAAAACTTGTTGCAAATCGATCGGTTCGGATCTTCCCGGAATTTNNCCAAGAAGCGGTTTGTTGGTTTGCGGCCTGCGGTGAGTCAGGGTTAAGGGGTGGGTAGGCCCGGTATANTAGGGCCCGGTTGATCCAAGCGGCCCTTAACGTTAACAGTTTNACCCCCAATTTAAACCTTTTTCCCGGGAAGGGTCGGGCCAATTTTCCCGGGAATTAAGGCGGNGGGACATGGCCGGCAGACAAGGTATGCCCGGAATACAAGAGTGGAANGGCCCGAATTNCCCAATTAAGAGATCCGCAACGTTATATTGGGCNGCCCAAAATGGTCCAACTTTAAAGTCAATGAGNCAACGAGCCGGANCANCAAGGTGTGGCAATACCACGAACNAAACATTCCCAAACCGCAAGAGCCGNCCTTTCANAACAACATAGAGGCTGTGTCCAAAGCCCAGGNCCCCAGCTTTTTATGGGCCCGGGCTTTCTNAGGGACCAGGTTCTTCATTTGGTTGAGACAAGCTCCCTNCCGCAGAGATAATAGCANTTGCCTTNACCNCCCTTTTATNACCAAATTAAAAGGGTTCTACTTATGGGTCNAACATGCACGTCTACNTCCCCAAANNTTCATTTTCCGNACAACAAGCNCAACCCAAATTTTACCTAACACGGGATTACACCTATTGGGATGCACGATTTCTCAGGAGACGAACACAGGTGAAAATTNATATACANCNTACACCTATCGGGCGCGTCTATNTACCTTTACCTCCCCGGGTATGACTTACA]

[+] EMBL AL692901             [CCGAGGTTTATTGCTGGAATGGGNGCCTGTAAAAACAGGTCAGCAATTGTTTGTAAAGCCTGAAACAAACCACAATCTGACGTGTGTGTGGTGAGATGCNNAAAGACCAGAACTGAAACCACGGCACTGATGTATGTAGCAAACAAATAGCAGGCTTGCTAGACTANCATTATTGTAAGCAGGAAAGCAAGACAAAACTTGTTGCAAATCGATCGGTTCGGATCTTCCCGGAATTTNNCCAAGAAGCGGTTTGTTGGTTTGCGGCCTGCGGTGAGTCAGGGTTAAGGGGTGGGTAGGCCCGGTATANTAGGGCCCGGTTGATCCAAGCGGCCCTTAACGTTAACAGTTTNACCCCCAATTTAAACCTTTTTCCCGGGAAGGGTCGGGCCAATTTTCCCGGGAATTAAGGCGGNGGGACATGGCCGGCAGACAAGGTATGCCCGGAATACAAGAGTGGAANGGCCCGAATTNCCCAATTAAGAGATCCGCAACGTTATATTGGGCNGCCCAAAATGGTCCAACTTTAAAGTCAATGAGNCAACGAGCCGGANCANCAAGGTGTGGCAATACCACGAACNAAACATTCCCAAACCGCAAGAGCCGNCCTTTCANAACAACATAGAGGCTGTGTCCAAAGCCCAGGNCCCCAGCTTTTTATGGGCCCGGGCTTTCTNAGGGACCAGGTTCTTCATTTGGTTGAGACAAGCTCCCTNCCGCAGAGATAATAGCANTTGCCTTNACCNCCCTTTTATNACCAAATTAAAAGGGTTCTACTTATGGGTCNAACATGCACGTCTACNTCCCCAAANNTTCATTTTCCGNACAACAAGCNCAACCCAAATTTTACCTAACACGGGATTACACCTATTGGGATGCACGATTTCTCAGGAGACGAACACAGGTGAAAATTNATATACANCNTACACCTATCGGGCGCGTCTATNTACCTTTACCTCCCCGGGTATGACTTACA]


>consensus_5105#0 CCGAGGTTTATTGCTGGAATGGGNGCCTGTAAAAACAGGTCAGCAATTGTTTGTAAAGCC TGAAACAAACCACAATCTGACGTGTGTGTGGTGAGATGCNNAAAGACCAGAACTGAAACC ACGGCACTGATGTATGTAGCAAACAAATAGCAGGCTTGCTAGACTANCATTATTGTAAGC AGGAAAGCAAGACAAAACTTGTTGCAAATCGATCGGTTCGGATCTTCCCGGAATTTNNCC AAGAAGCGGTTTGTTGGTTTGCGGCCTGCGGTGAGTCAGGGTTAAGGGGTGGGTAGGCCC GGTATANTAGGGCCCGGTTGATCCAAGCGGCCCTTAACGTTAACAGTTTNACCCCCAATT TAAACCTTTTTCCCGGGAAGGGTCGGGCCAATTTTCCCGGGAATTAAGGCGGNGGGACAT GGCCGGCAGACAAGGTATGCCCGGAATACAAGAGTGGAANGGCCCGAATTNCCCAATTAA GAGATCCGCAACGTTATATTGGGCNGCCCAAAATGGTCCAACTTTAAAGTCAATGAGNCA ACGAGCCGGANCANCAAGGTGTGGCAATACCACGAACNAAACATTCCCAAACCGCAAGAG CCGNCCTTTCANAACAACATAGAGGCTGTGTCCAAAGCCCAGGNCCCCAGCTTTTTATGG GCCCGGGCTTTCTNAGGGACCAGGTTCTTCATTTGGTTGAGACAAGCTCCCTNCCGCAGA GATAATAGCANTTGCCTTNACCNCCCTTTTATNACCAAATTAAAAGGGTTCTACTTATGG GTCNAACATGCACGTCTACNTCCCCAAANNTTCATTTTCCGNACAACAAGCNCAACCCAA ATTTTACCTAACACGGGATTACACCTATTGGGATGCACGATTTCTCAGGAGACGAACACA GGTGAAAATTNATATACANCNTACACCTATCGGGCGCGTCTATNTACCTTTACCTCCCCG GGTATGACTTACA



consensusID : consensus_5105#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 904
fasta sequence
                              [GTTTGTAAAGCCTGAAACAAACCACAATCGACGGGTGGGGAGATGCAAAAGACCAGAACGAAACCACGGCACTGATGTATGTAGCAAACAAATAGCAGCGGCAGCAGCCATATGTAGAGAAGCAAACAAACTGTGCAAACACGTCGATCTTCCGATTAGCAGAGCGTGTGTGGCGGTAGTAGGTTTTGTTGTTTTTCGTTAGGCCCGTACACGCCTACTACTTACCACTACTTCGAGCGCATTCGATAGGGAGCGAAAGAGCGAAAAGAGCCATCCATAGAATCCACTTTGCGCAAAGCATAGAGAAAAGAAGGAACACACTCACAGCCTAAAGCGAAAGCATTTGCGTTGCGTTTGAAACCCCAAAATCTCCTTCATAGTTTGTAGTTCATATCAAACACATCAGTTTGTTTTGAAAGTATTTCTCTGCTTCTCCGTTTATATTCTTCTCTGCCCTCCAGTGTGTCATGTATTATACCCCATTAATGTTTCAAGGGGTGTGTGTGTGTTTTTTTTTCGAATTTCCTTTCAATCTCTATGTCTCACCCGTGCGACATGCCCAATGTCTGCGGGAGCCCCATTTTATATTGCTATTATTATTATTATTATTATTATTAATTATCGTTATTATTAATTTTTATCCAAAATGTCTGATTTCTACGCGCAAACCGTGGTATGGAACGCCCGCGCAAGCAGCAACCGGTTTGCAACCATTATTTATTATCGTTTAGTCACTACACGTTGATCGTACCGGTTATATTGTTCGAATTTGTTCCGGAAGACGGGGACTCGTCTCACACACTTGTGTACTACAATATTTACGATTTTATGCAAGCTTTAAACAACCCCCCTTCATTAGCAAGCTCCCAGTTTTCGTTGCGATGCATCACGATCGTCCCCCAGT]

[+] EMBL BX615016             [GTTTGTAAAGCCTGAAACAAACCACAATCGACGGGTGGGGAGATGCAAAAGACCAGAACGAAACCACGGCACTGATGTATGTAGCAAACAAATAGCAGCGGCAGCAGCCATATGTAGAGAAGCAAACAAACTGTGCAAACACGTCGATCTTCCGATTAGCAGAGCGTGTGTGGCGGTAGTAGGTTTTGTTGTTTTTCGTTAGGCCCGTACACGCCTACTACTTACCACTACTTCGAGCGCATTCGATAGGGAGCGAAAGAGCGAAAAGAGCCATCCATAGAATCCACTTTGCGCAAAGCATAGAGAAAAGAAGGAACACACTCACAGCCTAAAGCGAAAGCATTTGCGTTGCGTTTGAAACCCCAAAATCTCCTTCATAGTTTGTAGTTCATATCAAACACATCAGTTTGTTTTGAAAGTATTTCTCTGCTTCTCCGTTTATATTCTTCTCTGCCCTCCAGTGTGTCATGTATTATACCCCATTAATGTTTCAAGGGGTGTGTGTGTG TTTTTTTTCGAATTTCCTTTCAATCTCTATGTCTCACCCGTGCGACATGCCCAATGTCTGCGGGAGCCCCATTTTATATTGCTATTATTATTATTATTATTATTATTAATTATCGTTATT                                                                                                                                                                                                                                                                                   ]
[+] EMBL BX610697             [                                                                                                                                                                                                                                                                                                            TAGAGAAAAGAAGGAACACACTCACAGCCTAAAGCGAAAGCATTTGCGTTGCGTTTGAAACCCCAAAATCTCCTTCATAGTTTGTAGTTCATATCAAACACATCAGTTTGTTTTGAAAGTATTTCTCTGCTTCTCCGTTTATATTCTTCTCTGCCCTCCAGTGTGTCATGTATTATACCCCATTAATGTTTCAAGGGGTGTGTGTGTGTTTTTTTTTCGAATTTCCTTTCAATCTCTATGTCTCACCCGTGCGACATGCCCAATGTCTGCGGGAGCCCCATTTTATATTGCTATTATTATTATTATTATTATTATTAATTATCGTTATTATTAATTTTTATCCAAAATGTCTGATTTCTACGCGCAAACCGTGGTATGGAACGCCCGCGCAAGCAGCAACCGGTTTGCAACCATTATTTATTATCGTTTAGTCACTACACGTTGATCGTACCGGTTATATTGTTCGAATTTGTTCCGGAAGACGGGGACTCGTCTCACACACTTGTGTACTACAATATTTACGATTTTATGCAAGCTTTAAACAACCCCCCTTCATTAGCAAGCTCCCAGTTTTCGTTGCGATGCATCACGATCGTCCCCCAGT]
[+] EMBL BX610696             [                                                                                                                                                                                                                                                                                                                      AAGGAACACACTCACAGCCTAAAGCGAAAGCATTTGCGTTTCGTTTGAAACCCCAAAATCTCCTTCATAGTTTGTAGTTCATATCAAACACATCAGTTTGTTTTGAAAGTATTTCTCTGCTTCTCCGTTTATATTCTTCTCTGCCCTCCAGTGTGTCATGTATTATACCCCATTAATGTTTCAAGGGGTGTGTGTGTGTTTTTTTTTCGAATTTCCTTTCAATCTCTATGTCTCACCCGTGCGACATGCCCAATGTCTGCGGGAGCCCCATTTTATATTGCTATTATTATTATTATTATTATTATTAATTATCGTTATTATTAATTTTTATCCAAAATGTCTGATTTCTACGCGCAAACCGTGGTATGGAACGCCCGCGCAAGCAGCAACCGGTTTGCAACCAT                                                                                                                                                                                              ]


>consensus_5105#1 GTTTGTAAAGCCTGAAACAAACCACAATCGACGGGTGGGGAGATGCAAAAGACCAGAACG AAACCACGGCACTGATGTATGTAGCAAACAAATAGCAGCGGCAGCAGCCATATGTAGAGA AGCAAACAAACTGTGCAAACACGTCGATCTTCCGATTAGCAGAGCGTGTGTGGCGGTAGT AGGTTTTGTTGTTTTTCGTTAGGCCCGTACACGCCTACTACTTACCACTACTTCGAGCGC ATTCGATAGGGAGCGAAAGAGCGAAAAGAGCCATCCATAGAATCCACTTTGCGCAAAGCA TAGAGAAAAGAAGGAACACACTCACAGCCTAAAGCGAAAGCATTTGCGTTGCGTTTGAAA CCCCAAAATCTCCTTCATAGTTTGTAGTTCATATCAAACACATCAGTTTGTTTTGAAAGT ATTTCTCTGCTTCTCCGTTTATATTCTTCTCTGCCCTCCAGTGTGTCATGTATTATACCC CATTAATGTTTCAAGGGGTGTGTGTGTGTTTTTTTTTCGAATTTCCTTTCAATCTCTATG TCTCACCCGTGCGACATGCCCAATGTCTGCGGGAGCCCCATTTTATATTGCTATTATTAT TATTATTATTATTATTAATTATCGTTATTATTAATTTTTATCCAAAATGTCTGATTTCTA CGCGCAAACCGTGGTATGGAACGCCCGCGCAAGCAGCAACCGGTTTGCAACCATTATTTA TTATCGTTTAGTCACTACACGTTGATCGTACCGGTTATATTGTTCGAATTTGTTCCGGAA GACGGGGACTCGTCTCACACACTTGTGTACTACAATATTTACGATTTTATGCAAGCTTTA AACAACCCCCCTTCATTAGCAAGCTCCCAGTTTTCGTTGCGATGCATCACGATCGTCCCC CAGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5105#0      CCGAGGTTTATTGCTGGAATGGGNGCCTGTAAAAACAGGTCAGCAATTGTTTGTAAAGCC 60
consensus_5105#1      ------------------------------------------------GTTTGTAAAGCC 12
                                                                      ************

consensus_5105#0      TGAAACAAACCACAATCTGACGTGTGTGTGGTGAGATGCNNAAAGACCAGAACTGAAACC 120
consensus_5105#1      TGAAACAAACCACAATC-GACGGGTG----GGGAGATGCAAAA-GACCAGAAC-GAAACC 65
                      ***************** **** ***    * *******  ** ********* ******

consensus_5105#0      ACGGCACTGATGTATGTAGCAAACAAATAGCAGGCTTGCTAGACTANCATTATTGTAAGC 180
consensus_5105#1      ACGGCACTGATGTATGTAGCAAACAAATAGCAG----------CGGCAGCAGCCATATGT 115
                      *********************************          *           ** * 

consensus_5105#0      AGGAAAGCAAGACAAAACTTGTTG-CAAATCGATCGGTTCGGATCTTCCCGGAATTTNNC 239
consensus_5105#1      AGAGAAGCAA-ACAAACTGTGCAAACACGTCGATC--TTCCGATTAGCAGAGCGTGTGTG 172
                      **  ****** *****   **    **  ******  *** ***   *   *  * *   

consensus_5105#0      CAAGAAGCGG--TTTGTTGGTTTGCG----GCCTGCGGTGAGTCAGGGTTAAGGGGTGGG 293
consensus_5105#1      GCGGTAGTAGGTTTTGTTGTTTTTCGTTAGGCCCGTACACGCCTACTACTTACCACTACT 232
                         * **  *  ******* *** **    *** *         *    * *    *   

consensus_5105#0      TAGGCCCGGTATANTAGGGCCCGGTTGATCCAAGCG-GCCCTTAACGTTAACAGTTTNAC 352
consensus_5105#1      TCGAGCGCATTCGATAGGGAGCGAAAGAGCGAAAAGAGCCATCCATAGAATCCACTTTGC 292
                      * *  *   *    *****  **   ** * **  * *** *  *    * *   **  *

consensus_5105#0      CCCCAATTTAAAC-----------CTTTTTCCCGGGAAGGGTCGGGCCAATTTTCCCGGG 401
consensus_5105#1      GCAAAGCATAGAGAAAAGAAGGAACACACTCACAGCCTAAAGCGAAAGCATTTGCGTTGC 352
                       *  *   ** *            *    ** * *       **     **** *   * 

consensus_5105#0      AATTAAGGCGGNGGGACATGGCCGGCAGACAA-GGTATGCCCGGAATACAAGAGTGGAAN 460
consensus_5105#1      GTTTGAAACCCCAAAATCTCCTTCATAGTTTGTAGTTCATATCAAACACATCAGT---TT 409
                        ** *  *      *  *       **      **        ** ***  ***     

consensus_5105#0      GGCCCGAATTNCCCAATTAAGAGATCCGCA-ACGTTATATTGGGCNGCCCAAAATGGTCC 519
consensus_5105#1      GTTTTGAAAGTATTTCTCTGCTTCTCCGTTTATATTCTTCTCTGCCCTCCAGTGTG-TCA 468
                      *    ***        *       ****   *  ** *  *  **   ***   ** ** 

consensus_5105#0      AACTTTAAAGTCAATGAGNCAACGAGCCGGANCANCAAGGTGTGGCAATACCACGAACNA 579
consensus_5105#1      TGTATTATACCCCAT----TAATGTTTCAAGGGGTGTGTGTGTGTTTTTTTTTCGAATT- 523
                          *** *  * **     ** *   *           *****    *    ****   

consensus_5105#0      AACATTCCCAAACCGCAAGAGCCGNCCTTTCANAACAACATAGAGGCTGTGTCCAAAGCC 639
consensus_5105#1      --TCCTTTCAATCTCTATGTCTCACCCGTGCGACATGCC-CAATGTCTGCG---GGAGCC 577
                           *  *** *   * *   *  ** * *   *   *  *  * *** *     ****

consensus_5105#0      CAGGNCCCCAGCTTT-TTATGGGCCCGGGCTTTCTNAGGGACCAGGTTCTTCATTTGGTT 698
consensus_5105#1      CCATTTTATATTGCTATTATTATTATTATTATTATTATTAATTATCGTTATTATTAATTT 637
                      *        *    * ****           ** * *   *  *   *  * ***   **

consensus_5105#0      G-AGACAAGCTCCCTNCCGCAGAGATAATAGCANTTGCCTTNACCNCCCTTTTA-----T 752
consensus_5105#1      TTATCCAAAATGTCTGATTTCTACGCGCAAACCGTGGTATGGAACGCCCGCGCAAGCAGC 697
                        *  ***  *  **       *      * *  * *  *  * * ***    *      

consensus_5105#0      NACCAAATTAAAAGGGTTCTAC-TTATGGGTCNAACA-TGCACGTCTACNTCCCCAAANN 810
consensus_5105#1      AACCGGTTTGCAACCATTATTTATTATCGTTTAGTCACTACACGTTGATCGTACCG--GT 755
                       ***   **  **   ** *   **** * *    ** * *****  *     **     

consensus_5105#0      TTCATTTTCCGNACAACAAGCNCAACCCAAATTTTACCTAACACGGGATTACACCTATTG 870
consensus_5105#1      TATATTGTTCGAATTTGTTCCGGAAGACGGGGACT-CGTCTCACACACTTGTGTACTACA 814
                      *  *** * ** *       *  **  *      * * *  ***    **          

consensus_5105#0      GGATGCACGATTTCTCAGGAGACGAACACAGGTGAAAATTNATATACANCNTACACCTAT 930
consensus_5105#1      ATATTTACGATTTTATGCAAGCTTTAAACAACCCCCCTTCATTAGCAAGCTCCCAGTTTT 874
                        **  *******      **    * ***        *   **   * *   **  * *

consensus_5105#0      CGGGCGCGTCTATNTACCTTTACCTCCCCGGGTATGACTTACA 973
consensus_5105#1      CGT-TGCGATGCATCACGATCGTCCCCCAGT------------ 904
                      **   ***       **  *   * *** *             




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)