These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5105#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 973 fasta sequence [CCGAGGTTTATTGCTGGAATGGGNGCCTGTAAAAACAGGTCAGCAATTGTTTGTAAAGCCTGAAACAAACCACAATCTGACGTGTGTGTGGTGAGATGCNNAAAGACCAGAACTGAAACCACGGCACTGATGTATGTAGCAAACAAATAGCAGGCTTGCTAGACTANCATTATTGTAAGCAGGAAAGCAAGACAAAACTTGTTGCAAATCGATCGGTTCGGATCTTCCCGGAATTTNNCCAAGAAGCGGTTTGTTGGTTTGCGGCCTGCGGTGAGTCAGGGTTAAGGGGTGGGTAGGCCCGGTATANTAGGGCCCGGTTGATCCAAGCGGCCCTTAACGTTAACAGTTTNACCCCCAATTTAAACCTTTTTCCCGGGAAGGGTCGGGCCAATTTTCCCGGGAATTAAGGCGGNGGGACATGGCCGGCAGACAAGGTATGCCCGGAATACAAGAGTGGAANGGCCCGAATTNCCCAATTAAGAGATCCGCAACGTTATATTGGGCNGCCCAAAATGGTCCAACTTTAAAGTCAATGAGNCAACGAGCCGGANCANCAAGGTGTGGCAATACCACGAACNAAACATTCCCAAACCGCAAGAGCCGNCCTTTCANAACAACATAGAGGCTGTGTCCAAAGCCCAGGNCCCCAGCTTTTTATGGGCCCGGGCTTTCTNAGGGACCAGGTTCTTCATTTGGTTGAGACAAGCTCCCTNCCGCAGAGATAATAGCANTTGCCTTNACCNCCCTTTTATNACCAAATTAAAAGGGTTCTACTTATGGGTCNAACATGCACGTCTACNTCCCCAAANNTTCATTTTCCGNACAACAAGCNCAACCCAAATTTTACCTAACACGGGATTACACCTATTGGGATGCACGATTTCTCAGGAGACGAACACAGGTGAAAATTNATATACANCNTACACCTATCGGGCGCGTCTATNTACCTTTACCTCCCCGGGTATGACTTACA] [+] EMBL AL692901 [CCGAGGTTTATTGCTGGAATGGGNGCCTGTAAAAACAGGTCAGCAATTGTTTGTAAAGCCTGAAACAAACCACAATCTGACGTGTGTGTGGTGAGATGCNNAAAGACCAGAACTGAAACCACGGCACTGATGTATGTAGCAAACAAATAGCAGGCTTGCTAGACTANCATTATTGTAAGCAGGAAAGCAAGACAAAACTTGTTGCAAATCGATCGGTTCGGATCTTCCCGGAATTTNNCCAAGAAGCGGTTTGTTGGTTTGCGGCCTGCGGTGAGTCAGGGTTAAGGGGTGGGTAGGCCCGGTATANTAGGGCCCGGTTGATCCAAGCGGCCCTTAACGTTAACAGTTTNACCCCCAATTTAAACCTTTTTCCCGGGAAGGGTCGGGCCAATTTTCCCGGGAATTAAGGCGGNGGGACATGGCCGGCAGACAAGGTATGCCCGGAATACAAGAGTGGAANGGCCCGAATTNCCCAATTAAGAGATCCGCAACGTTATATTGGGCNGCCCAAAATGGTCCAACTTTAAAGTCAATGAGNCAACGAGCCGGANCANCAAGGTGTGGCAATACCACGAACNAAACATTCCCAAACCGCAAGAGCCGNCCTTTCANAACAACATAGAGGCTGTGTCCAAAGCCCAGGNCCCCAGCTTTTTATGGGCCCGGGCTTTCTNAGGGACCAGGTTCTTCATTTGGTTGAGACAAGCTCCCTNCCGCAGAGATAATAGCANTTGCCTTNACCNCCCTTTTATNACCAAATTAAAAGGGTTCTACTTATGGGTCNAACATGCACGTCTACNTCCCCAAANNTTCATTTTCCGNACAACAAGCNCAACCCAAATTTTACCTAACACGGGATTACACCTATTGGGATGCACGATTTCTCAGGAGACGAACACAGGTGAAAATTNATATACANCNTACACCTATCGGGCGCGTCTATNTACCTTTACCTCCCCGGGTATGACTTACA] consensusID : consensus_5105#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 904 fasta sequence [GTTTGTAAAGCCTGAAACAAACCACAATCGACGGGTGGGGAGATGCAAAAGACCAGAACGAAACCACGGCACTGATGTATGTAGCAAACAAATAGCAGCGGCAGCAGCCATATGTAGAGAAGCAAACAAACTGTGCAAACACGTCGATCTTCCGATTAGCAGAGCGTGTGTGGCGGTAGTAGGTTTTGTTGTTTTTCGTTAGGCCCGTACACGCCTACTACTTACCACTACTTCGAGCGCATTCGATAGGGAGCGAAAGAGCGAAAAGAGCCATCCATAGAATCCACTTTGCGCAAAGCATAGAGAAAAGAAGGAACACACTCACAGCCTAAAGCGAAAGCATTTGCGTTGCGTTTGAAACCCCAAAATCTCCTTCATAGTTTGTAGTTCATATCAAACACATCAGTTTGTTTTGAAAGTATTTCTCTGCTTCTCCGTTTATATTCTTCTCTGCCCTCCAGTGTGTCATGTATTATACCCCATTAATGTTTCAAGGGGTGTGTGTGTGTTTTTTTTTCGAATTTCCTTTCAATCTCTATGTCTCACCCGTGCGACATGCCCAATGTCTGCGGGAGCCCCATTTTATATTGCTATTATTATTATTATTATTATTATTAATTATCGTTATTATTAATTTTTATCCAAAATGTCTGATTTCTACGCGCAAACCGTGGTATGGAACGCCCGCGCAAGCAGCAACCGGTTTGCAACCATTATTTATTATCGTTTAGTCACTACACGTTGATCGTACCGGTTATATTGTTCGAATTTGTTCCGGAAGACGGGGACTCGTCTCACACACTTGTGTACTACAATATTTACGATTTTATGCAAGCTTTAAACAACCCCCCTTCATTAGCAAGCTCCCAGTTTTCGTTGCGATGCATCACGATCGTCCCCCAGT] [+] EMBL BX615016 [GTTTGTAAAGCCTGAAACAAACCACAATCGACGGGTGGGGAGATGCAAAAGACCAGAACGAAACCACGGCACTGATGTATGTAGCAAACAAATAGCAGCGGCAGCAGCCATATGTAGAGAAGCAAACAAACTGTGCAAACACGTCGATCTTCCGATTAGCAGAGCGTGTGTGGCGGTAGTAGGTTTTGTTGTTTTTCGTTAGGCCCGTACACGCCTACTACTTACCACTACTTCGAGCGCATTCGATAGGGAGCGAAAGAGCGAAAAGAGCCATCCATAGAATCCACTTTGCGCAAAGCATAGAGAAAAGAAGGAACACACTCACAGCCTAAAGCGAAAGCATTTGCGTTGCGTTTGAAACCCCAAAATCTCCTTCATAGTTTGTAGTTCATATCAAACACATCAGTTTGTTTTGAAAGTATTTCTCTGCTTCTCCGTTTATATTCTTCTCTGCCCTCCAGTGTGTCATGTATTATACCCCATTAATGTTTCAAGGGGTGTGTGTGTG TTTTTTTTCGAATTTCCTTTCAATCTCTATGTCTCACCCGTGCGACATGCCCAATGTCTGCGGGAGCCCCATTTTATATTGCTATTATTATTATTATTATTATTATTAATTATCGTTATT ] [+] EMBL BX610697 [ TAGAGAAAAGAAGGAACACACTCACAGCCTAAAGCGAAAGCATTTGCGTTGCGTTTGAAACCCCAAAATCTCCTTCATAGTTTGTAGTTCATATCAAACACATCAGTTTGTTTTGAAAGTATTTCTCTGCTTCTCCGTTTATATTCTTCTCTGCCCTCCAGTGTGTCATGTATTATACCCCATTAATGTTTCAAGGGGTGTGTGTGTGTTTTTTTTTCGAATTTCCTTTCAATCTCTATGTCTCACCCGTGCGACATGCCCAATGTCTGCGGGAGCCCCATTTTATATTGCTATTATTATTATTATTATTATTATTAATTATCGTTATTATTAATTTTTATCCAAAATGTCTGATTTCTACGCGCAAACCGTGGTATGGAACGCCCGCGCAAGCAGCAACCGGTTTGCAACCATTATTTATTATCGTTTAGTCACTACACGTTGATCGTACCGGTTATATTGTTCGAATTTGTTCCGGAAGACGGGGACTCGTCTCACACACTTGTGTACTACAATATTTACGATTTTATGCAAGCTTTAAACAACCCCCCTTCATTAGCAAGCTCCCAGTTTTCGTTGCGATGCATCACGATCGTCCCCCAGT] [+] EMBL BX610696 [ AAGGAACACACTCACAGCCTAAAGCGAAAGCATTTGCGTTTCGTTTGAAACCCCAAAATCTCCTTCATAGTTTGTAGTTCATATCAAACACATCAGTTTGTTTTGAAAGTATTTCTCTGCTTCTCCGTTTATATTCTTCTCTGCCCTCCAGTGTGTCATGTATTATACCCCATTAATGTTTCAAGGGGTGTGTGTGTGTTTTTTTTTCGAATTTCCTTTCAATCTCTATGTCTCACCCGTGCGACATGCCCAATGTCTGCGGGAGCCCCATTTTATATTGCTATTATTATTATTATTATTATTATTAATTATCGTTATTATTAATTTTTATCCAAAATGTCTGATTTCTACGCGCAAACCGTGGTATGGAACGCCCGCGCAAGCAGCAACCGGTTTGCAACCAT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5105#0 CCGAGGTTTATTGCTGGAATGGGNGCCTGTAAAAACAGGTCAGCAATTGTTTGTAAAGCC 60 consensus_5105#1 ------------------------------------------------GTTTGTAAAGCC 12 ************ consensus_5105#0 TGAAACAAACCACAATCTGACGTGTGTGTGGTGAGATGCNNAAAGACCAGAACTGAAACC 120 consensus_5105#1 TGAAACAAACCACAATC-GACGGGTG----GGGAGATGCAAAA-GACCAGAAC-GAAACC 65 ***************** **** *** * ******* ** ********* ****** consensus_5105#0 ACGGCACTGATGTATGTAGCAAACAAATAGCAGGCTTGCTAGACTANCATTATTGTAAGC 180 consensus_5105#1 ACGGCACTGATGTATGTAGCAAACAAATAGCAG----------CGGCAGCAGCCATATGT 115 ********************************* * ** * consensus_5105#0 AGGAAAGCAAGACAAAACTTGTTG-CAAATCGATCGGTTCGGATCTTCCCGGAATTTNNC 239 consensus_5105#1 AGAGAAGCAA-ACAAACTGTGCAAACACGTCGATC--TTCCGATTAGCAGAGCGTGTGTG 172 ** ****** ***** ** ** ****** *** *** * * * * consensus_5105#0 CAAGAAGCGG--TTTGTTGGTTTGCG----GCCTGCGGTGAGTCAGGGTTAAGGGGTGGG 293 consensus_5105#1 GCGGTAGTAGGTTTTGTTGTTTTTCGTTAGGCCCGTACACGCCTACTACTTACCACTACT 232 * ** * ******* *** ** *** * * * * * consensus_5105#0 TAGGCCCGGTATANTAGGGCCCGGTTGATCCAAGCG-GCCCTTAACGTTAACAGTTTNAC 352 consensus_5105#1 TCGAGCGCATTCGATAGGGAGCGAAAGAGCGAAAAGAGCCATCCATAGAATCCACTTTGC 292 * * * * ***** ** ** * ** * *** * * * * ** * consensus_5105#0 CCCCAATTTAAAC-----------CTTTTTCCCGGGAAGGGTCGGGCCAATTTTCCCGGG 401 consensus_5105#1 GCAAAGCATAGAGAAAAGAAGGAACACACTCACAGCCTAAAGCGAAAGCATTTGCGTTGC 352 * * ** * * ** * * ** **** * * consensus_5105#0 AATTAAGGCGGNGGGACATGGCCGGCAGACAA-GGTATGCCCGGAATACAAGAGTGGAAN 460 consensus_5105#1 GTTTGAAACCCCAAAATCTCCTTCATAGTTTGTAGTTCATATCAAACACATCAGT---TT 409 ** * * * * ** ** ** *** *** consensus_5105#0 GGCCCGAATTNCCCAATTAAGAGATCCGCA-ACGTTATATTGGGCNGCCCAAAATGGTCC 519 consensus_5105#1 GTTTTGAAAGTATTTCTCTGCTTCTCCGTTTATATTCTTCTCTGCCCTCCAGTGTG-TCA 468 * *** * **** * ** * * ** *** ** ** consensus_5105#0 AACTTTAAAGTCAATGAGNCAACGAGCCGGANCANCAAGGTGTGGCAATACCACGAACNA 579 consensus_5105#1 TGTATTATACCCCAT----TAATGTTTCAAGGGGTGTGTGTGTGTTTTTTTTTCGAATT- 523 *** * * ** ** * * ***** * **** consensus_5105#0 AACATTCCCAAACCGCAAGAGCCGNCCTTTCANAACAACATAGAGGCTGTGTCCAAAGCC 639 consensus_5105#1 --TCCTTTCAATCTCTATGTCTCACCCGTGCGACATGCC-CAATGTCTGCG---GGAGCC 577 * *** * * * * ** * * * * * * *** * **** consensus_5105#0 CAGGNCCCCAGCTTT-TTATGGGCCCGGGCTTTCTNAGGGACCAGGTTCTTCATTTGGTT 698 consensus_5105#1 CCATTTTATATTGCTATTATTATTATTATTATTATTATTAATTATCGTTATTATTAATTT 637 * * * **** ** * * * * * * *** ** consensus_5105#0 G-AGACAAGCTCCCTNCCGCAGAGATAATAGCANTTGCCTTNACCNCCCTTTTA-----T 752 consensus_5105#1 TTATCCAAAATGTCTGATTTCTACGCGCAAACCGTGGTATGGAACGCCCGCGCAAGCAGC 697 * *** * ** * * * * * * * * *** * consensus_5105#0 NACCAAATTAAAAGGGTTCTAC-TTATGGGTCNAACA-TGCACGTCTACNTCCCCAAANN 810 consensus_5105#1 AACCGGTTTGCAACCATTATTTATTATCGTTTAGTCACTACACGTTGATCGTACCG--GT 755 *** ** ** ** * **** * * ** * ***** * ** consensus_5105#0 TTCATTTTCCGNACAACAAGCNCAACCCAAATTTTACCTAACACGGGATTACACCTATTG 870 consensus_5105#1 TATATTGTTCGAATTTGTTCCGGAAGACGGGGACT-CGTCTCACACACTTGTGTACTACA 814 * *** * ** * * ** * * * * *** ** consensus_5105#0 GGATGCACGATTTCTCAGGAGACGAACACAGGTGAAAATTNATATACANCNTACACCTAT 930 consensus_5105#1 ATATTTACGATTTTATGCAAGCTTTAAACAACCCCCCTTCATTAGCAAGCTCCCAGTTTT 874 ** ******* ** * *** * ** * * ** * * consensus_5105#0 CGGGCGCGTCTATNTACCTTTACCTCCCCGGGTATGACTTACA 973 consensus_5105#1 CGT-TGCGATGCATCACGATCGTCCCCCAGT------------ 904 ** *** ** * * *** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||