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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5105#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 973 fasta sequence
[CCGAGGTTTATTGCTGGAATGGGNGCCTGTAAAAACAGGTCAGCAATTGTTTGTAAAGCCTGAAACAAACCACAATCTGACGTGTGTGTGGTGAGATGCNNAAAGACCAGAACTGAAACCACGGCACTGATGTATGTAGCAAACAAATAGCAGGCTTGCTAGACTANCATTATTGTAAGCAGGAAAGCAAGACAAAACTTGTTGCAAATCGATCGGTTCGGATCTTCCCGGAATTTNNCCAAGAAGCGGTTTGTTGGTTTGCGGCCTGCGGTGAGTCAGGGTTAAGGGGTGGGTAGGCCCGGTATANTAGGGCCCGGTTGATCCAAGCGGCCCTTAACGTTAACAGTTTNACCCCCAATTTAAACCTTTTTCCCGGGAAGGGTCGGGCCAATTTTCCCGGGAATTAAGGCGGNGGGACATGGCCGGCAGACAAGGTATGCCCGGAATACAAGAGTGGAANGGCCCGAATTNCCCAATTAAGAGATCCGCAACGTTATATTGGGCNGCCCAAAATGGTCCAACTTTAAAGTCAATGAGNCAACGAGCCGGANCANCAAGGTGTGGCAATACCACGAACNAAACATTCCCAAACCGCAAGAGCCGNCCTTTCANAACAACATAGAGGCTGTGTCCAAAGCCCAGGNCCCCAGCTTTTTATGGGCCCGGGCTTTCTNAGGGACCAGGTTCTTCATTTGGTTGAGACAAGCTCCCTNCCGCAGAGATAATAGCANTTGCCTTNACCNCCCTTTTATNACCAAATTAAAAGGGTTCTACTTATGGGTCNAACATGCACGTCTACNTCCCCAAANNTTCATTTTCCGNACAACAAGCNCAACCCAAATTTTACCTAACACGGGATTACACCTATTGGGATGCACGATTTCTCAGGAGACGAACACAGGTGAAAATTNATATACANCNTACACCTATCGGGCGCGTCTATNTACCTTTACCTCCCCGGGTATGACTTACA]
[+] EMBL AL692901 [CCGAGGTTTATTGCTGGAATGGGNGCCTGTAAAAACAGGTCAGCAATTGTTTGTAAAGCCTGAAACAAACCACAATCTGACGTGTGTGTGGTGAGATGCNNAAAGACCAGAACTGAAACCACGGCACTGATGTATGTAGCAAACAAATAGCAGGCTTGCTAGACTANCATTATTGTAAGCAGGAAAGCAAGACAAAACTTGTTGCAAATCGATCGGTTCGGATCTTCCCGGAATTTNNCCAAGAAGCGGTTTGTTGGTTTGCGGCCTGCGGTGAGTCAGGGTTAAGGGGTGGGTAGGCCCGGTATANTAGGGCCCGGTTGATCCAAGCGGCCCTTAACGTTAACAGTTTNACCCCCAATTTAAACCTTTTTCCCGGGAAGGGTCGGGCCAATTTTCCCGGGAATTAAGGCGGNGGGACATGGCCGGCAGACAAGGTATGCCCGGAATACAAGAGTGGAANGGCCCGAATTNCCCAATTAAGAGATCCGCAACGTTATATTGGGCNGCCCAAAATGGTCCAACTTTAAAGTCAATGAGNCAACGAGCCGGANCANCAAGGTGTGGCAATACCACGAACNAAACATTCCCAAACCGCAAGAGCCGNCCTTTCANAACAACATAGAGGCTGTGTCCAAAGCCCAGGNCCCCAGCTTTTTATGGGCCCGGGCTTTCTNAGGGACCAGGTTCTTCATTTGGTTGAGACAAGCTCCCTNCCGCAGAGATAATAGCANTTGCCTTNACCNCCCTTTTATNACCAAATTAAAAGGGTTCTACTTATGGGTCNAACATGCACGTCTACNTCCCCAAANNTTCATTTTCCGNACAACAAGCNCAACCCAAATTTTACCTAACACGGGATTACACCTATTGGGATGCACGATTTCTCAGGAGACGAACACAGGTGAAAATTNATATACANCNTACACCTATCGGGCGCGTCTATNTACCTTTACCTCCCCGGGTATGACTTACA]
consensusID : consensus_5105#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 904 fasta sequence
[GTTTGTAAAGCCTGAAACAAACCACAATCGACGGGTGGGGAGATGCAAAAGACCAGAACGAAACCACGGCACTGATGTATGTAGCAAACAAATAGCAGCGGCAGCAGCCATATGTAGAGAAGCAAACAAACTGTGCAAACACGTCGATCTTCCGATTAGCAGAGCGTGTGTGGCGGTAGTAGGTTTTGTTGTTTTTCGTTAGGCCCGTACACGCCTACTACTTACCACTACTTCGAGCGCATTCGATAGGGAGCGAAAGAGCGAAAAGAGCCATCCATAGAATCCACTTTGCGCAAAGCATAGAGAAAAGAAGGAACACACTCACAGCCTAAAGCGAAAGCATTTGCGTTGCGTTTGAAACCCCAAAATCTCCTTCATAGTTTGTAGTTCATATCAAACACATCAGTTTGTTTTGAAAGTATTTCTCTGCTTCTCCGTTTATATTCTTCTCTGCCCTCCAGTGTGTCATGTATTATACCCCATTAATGTTTCAAGGGGTGTGTGTGTGTTTTTTTTTCGAATTTCCTTTCAATCTCTATGTCTCACCCGTGCGACATGCCCAATGTCTGCGGGAGCCCCATTTTATATTGCTATTATTATTATTATTATTATTATTAATTATCGTTATTATTAATTTTTATCCAAAATGTCTGATTTCTACGCGCAAACCGTGGTATGGAACGCCCGCGCAAGCAGCAACCGGTTTGCAACCATTATTTATTATCGTTTAGTCACTACACGTTGATCGTACCGGTTATATTGTTCGAATTTGTTCCGGAAGACGGGGACTCGTCTCACACACTTGTGTACTACAATATTTACGATTTTATGCAAGCTTTAAACAACCCCCCTTCATTAGCAAGCTCCCAGTTTTCGTTGCGATGCATCACGATCGTCCCCCAGT]
[+] EMBL BX615016 [GTTTGTAAAGCCTGAAACAAACCACAATCGACGGGTGGGGAGATGCAAAAGACCAGAACGAAACCACGGCACTGATGTATGTAGCAAACAAATAGCAGCGGCAGCAGCCATATGTAGAGAAGCAAACAAACTGTGCAAACACGTCGATCTTCCGATTAGCAGAGCGTGTGTGGCGGTAGTAGGTTTTGTTGTTTTTCGTTAGGCCCGTACACGCCTACTACTTACCACTACTTCGAGCGCATTCGATAGGGAGCGAAAGAGCGAAAAGAGCCATCCATAGAATCCACTTTGCGCAAAGCATAGAGAAAAGAAGGAACACACTCACAGCCTAAAGCGAAAGCATTTGCGTTGCGTTTGAAACCCCAAAATCTCCTTCATAGTTTGTAGTTCATATCAAACACATCAGTTTGTTTTGAAAGTATTTCTCTGCTTCTCCGTTTATATTCTTCTCTGCCCTCCAGTGTGTCATGTATTATACCCCATTAATGTTTCAAGGGGTGTGTGTGTG TTTTTTTTCGAATTTCCTTTCAATCTCTATGTCTCACCCGTGCGACATGCCCAATGTCTGCGGGAGCCCCATTTTATATTGCTATTATTATTATTATTATTATTATTAATTATCGTTATT ]
[+] EMBL BX610697 [ TAGAGAAAAGAAGGAACACACTCACAGCCTAAAGCGAAAGCATTTGCGTTGCGTTTGAAACCCCAAAATCTCCTTCATAGTTTGTAGTTCATATCAAACACATCAGTTTGTTTTGAAAGTATTTCTCTGCTTCTCCGTTTATATTCTTCTCTGCCCTCCAGTGTGTCATGTATTATACCCCATTAATGTTTCAAGGGGTGTGTGTGTGTTTTTTTTTCGAATTTCCTTTCAATCTCTATGTCTCACCCGTGCGACATGCCCAATGTCTGCGGGAGCCCCATTTTATATTGCTATTATTATTATTATTATTATTATTAATTATCGTTATTATTAATTTTTATCCAAAATGTCTGATTTCTACGCGCAAACCGTGGTATGGAACGCCCGCGCAAGCAGCAACCGGTTTGCAACCATTATTTATTATCGTTTAGTCACTACACGTTGATCGTACCGGTTATATTGTTCGAATTTGTTCCGGAAGACGGGGACTCGTCTCACACACTTGTGTACTACAATATTTACGATTTTATGCAAGCTTTAAACAACCCCCCTTCATTAGCAAGCTCCCAGTTTTCGTTGCGATGCATCACGATCGTCCCCCAGT]
[+] EMBL BX610696 [ AAGGAACACACTCACAGCCTAAAGCGAAAGCATTTGCGTTTCGTTTGAAACCCCAAAATCTCCTTCATAGTTTGTAGTTCATATCAAACACATCAGTTTGTTTTGAAAGTATTTCTCTGCTTCTCCGTTTATATTCTTCTCTGCCCTCCAGTGTGTCATGTATTATACCCCATTAATGTTTCAAGGGGTGTGTGTGTGTTTTTTTTTCGAATTTCCTTTCAATCTCTATGTCTCACCCGTGCGACATGCCCAATGTCTGCGGGAGCCCCATTTTATATTGCTATTATTATTATTATTATTATTATTAATTATCGTTATTATTAATTTTTATCCAAAATGTCTGATTTCTACGCGCAAACCGTGGTATGGAACGCCCGCGCAAGCAGCAACCGGTTTGCAACCAT ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5105#0 CCGAGGTTTATTGCTGGAATGGGNGCCTGTAAAAACAGGTCAGCAATTGTTTGTAAAGCC 60
consensus_5105#1 ------------------------------------------------GTTTGTAAAGCC 12
************
consensus_5105#0 TGAAACAAACCACAATCTGACGTGTGTGTGGTGAGATGCNNAAAGACCAGAACTGAAACC 120
consensus_5105#1 TGAAACAAACCACAATC-GACGGGTG----GGGAGATGCAAAA-GACCAGAAC-GAAACC 65
***************** **** *** * ******* ** ********* ******
consensus_5105#0 ACGGCACTGATGTATGTAGCAAACAAATAGCAGGCTTGCTAGACTANCATTATTGTAAGC 180
consensus_5105#1 ACGGCACTGATGTATGTAGCAAACAAATAGCAG----------CGGCAGCAGCCATATGT 115
********************************* * ** *
consensus_5105#0 AGGAAAGCAAGACAAAACTTGTTG-CAAATCGATCGGTTCGGATCTTCCCGGAATTTNNC 239
consensus_5105#1 AGAGAAGCAA-ACAAACTGTGCAAACACGTCGATC--TTCCGATTAGCAGAGCGTGTGTG 172
** ****** ***** ** ** ****** *** *** * * * *
consensus_5105#0 CAAGAAGCGG--TTTGTTGGTTTGCG----GCCTGCGGTGAGTCAGGGTTAAGGGGTGGG 293
consensus_5105#1 GCGGTAGTAGGTTTTGTTGTTTTTCGTTAGGCCCGTACACGCCTACTACTTACCACTACT 232
* ** * ******* *** ** *** * * * * *
consensus_5105#0 TAGGCCCGGTATANTAGGGCCCGGTTGATCCAAGCG-GCCCTTAACGTTAACAGTTTNAC 352
consensus_5105#1 TCGAGCGCATTCGATAGGGAGCGAAAGAGCGAAAAGAGCCATCCATAGAATCCACTTTGC 292
* * * * ***** ** ** * ** * *** * * * * ** *
consensus_5105#0 CCCCAATTTAAAC-----------CTTTTTCCCGGGAAGGGTCGGGCCAATTTTCCCGGG 401
consensus_5105#1 GCAAAGCATAGAGAAAAGAAGGAACACACTCACAGCCTAAAGCGAAAGCATTTGCGTTGC 352
* * ** * * ** * * ** **** * *
consensus_5105#0 AATTAAGGCGGNGGGACATGGCCGGCAGACAA-GGTATGCCCGGAATACAAGAGTGGAAN 460
consensus_5105#1 GTTTGAAACCCCAAAATCTCCTTCATAGTTTGTAGTTCATATCAAACACATCAGT---TT 409
** * * * * ** ** ** *** ***
consensus_5105#0 GGCCCGAATTNCCCAATTAAGAGATCCGCA-ACGTTATATTGGGCNGCCCAAAATGGTCC 519
consensus_5105#1 GTTTTGAAAGTATTTCTCTGCTTCTCCGTTTATATTCTTCTCTGCCCTCCAGTGTG-TCA 468
* *** * **** * ** * * ** *** ** **
consensus_5105#0 AACTTTAAAGTCAATGAGNCAACGAGCCGGANCANCAAGGTGTGGCAATACCACGAACNA 579
consensus_5105#1 TGTATTATACCCCAT----TAATGTTTCAAGGGGTGTGTGTGTGTTTTTTTTTCGAATT- 523
*** * * ** ** * * ***** * ****
consensus_5105#0 AACATTCCCAAACCGCAAGAGCCGNCCTTTCANAACAACATAGAGGCTGTGTCCAAAGCC 639
consensus_5105#1 --TCCTTTCAATCTCTATGTCTCACCCGTGCGACATGCC-CAATGTCTGCG---GGAGCC 577
* *** * * * * ** * * * * * * *** * ****
consensus_5105#0 CAGGNCCCCAGCTTT-TTATGGGCCCGGGCTTTCTNAGGGACCAGGTTCTTCATTTGGTT 698
consensus_5105#1 CCATTTTATATTGCTATTATTATTATTATTATTATTATTAATTATCGTTATTATTAATTT 637
* * * **** ** * * * * * * *** **
consensus_5105#0 G-AGACAAGCTCCCTNCCGCAGAGATAATAGCANTTGCCTTNACCNCCCTTTTA-----T 752
consensus_5105#1 TTATCCAAAATGTCTGATTTCTACGCGCAAACCGTGGTATGGAACGCCCGCGCAAGCAGC 697
* *** * ** * * * * * * * * *** *
consensus_5105#0 NACCAAATTAAAAGGGTTCTAC-TTATGGGTCNAACA-TGCACGTCTACNTCCCCAAANN 810
consensus_5105#1 AACCGGTTTGCAACCATTATTTATTATCGTTTAGTCACTACACGTTGATCGTACCG--GT 755
*** ** ** ** * **** * * ** * ***** * **
consensus_5105#0 TTCATTTTCCGNACAACAAGCNCAACCCAAATTTTACCTAACACGGGATTACACCTATTG 870
consensus_5105#1 TATATTGTTCGAATTTGTTCCGGAAGACGGGGACT-CGTCTCACACACTTGTGTACTACA 814
* *** * ** * * ** * * * * *** **
consensus_5105#0 GGATGCACGATTTCTCAGGAGACGAACACAGGTGAAAATTNATATACANCNTACACCTAT 930
consensus_5105#1 ATATTTACGATTTTATGCAAGCTTTAAACAACCCCCCTTCATTAGCAAGCTCCCAGTTTT 874
** ******* ** * *** * ** * * ** * *
consensus_5105#0 CGGGCGCGTCTATNTACCTTTACCTCCCCGGGTATGACTTACA 973
consensus_5105#1 CGT-TGCGATGCATCACGATCGTCCCCCAGT------------ 904
** *** ** * * *** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||