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Anopheles gambiae
cluster # 5106 cluster # 5106       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5106#0 length = 847 sequences # 2  
consensus_5106#1 length = 556 sequences # 1  
consensus_5106#2 length = 454 sequences # 1  

consensusID : consensus_5106#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 847
fasta sequence
                              [CCCCCGNGGTTAATTAGCTAATTGGAATGCGCTTTGTTTTTTCTTTGTATATACAAATCGTTGATCTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAATTTTGCACTACTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCCTGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAGTTAANGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAGGATGAAAAAANAACAACAACAGAAACCATCAAAATATATGATATACTCTACGCTTTTACGACGATTATTAATGCTGCAGCAAAACAAATACAACAACAAAATCCCCAAACCTACCACTAATTACCACCACTAGCCCGCTGGAATCGCGGAGTGTCCGTGTGTACAGCTNTAGGACGTTCGACTAAGTTACAAGTGTAGCTGGAGTAGTGTGCTGGGGGGAAAACACANAACAGCAGCGGCGCAGNTGCTCACATGANAACCGACNCATCCACCNCNCNNAATATTATATTTCTTCCAGCATTANGGAAAACACCACCCGAANCGAGTNNACGCTACAACACCACCATTACAACACTTAAAACNACACCANGAACGTTCNGCAAANACACAACTCGTNNANTACTTTTCCACCCTGACACGATATTATNNCAATACAGTGTCCCCACGCCCGCCCACATANCCCCNAATCACAACCAACCACGCTCACCGCCTACCTCTCTCTCNTCCCCCCCCTAATCNCNCCCNTCTCTCGCNCACAACTC]

[+] EMBL AL692968             [CCCCCGNGGTTAATTAGCTAATTGGAATGCGCTTTGTTTTTTCTTTGTATATACAAATCGTTGATCTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAATTTTGCACTACTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCCTGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAGTTAANGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAGGATGAAAAAANAACAACAACAGAAACCATCAAAATATATGATATACTCTACGCTTTTACGACGATTATTAATGCTGCAGCAAAACAAATACAACAACAAAATCCCCAAACCTACCACTAATTACCACCACTAGCCCGCTGGAATCGCGGAGTGTCCGTGTGTACAGCTNTAGGACGTTCGACTAAGTTACAAGTGTAGCTGGAGTAGTGTGCTGGGGGGAAAACACANAACAGCAGCGGCGCAGNTGCTCACATGANAACCGACNCATCCACCNCNCNNAATATTATATTTCTTCCAGCATTANGGAAAACACCACCCGAANCGAGTNNACGCTACAACACCACCATTACAACACTTAAAACNACACCANGAACGTTCNGCAAANACACAACTCGTNNANTACTTTTCCACCCTGACACGATATTATNNCAATACAGTGTCCCCACGCCCGCCCACATANCCCCNAATCACAACCAACCACGCTCACCGCCTACCTCTCTCTCNTCCCCCCCCTAATCNCNCCCNTCTCTCGCNCACAACTC]
[+] EMBL BX609776             [                                                                                                                                                                                                                                                        aaGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAGGATGAAAAAA AACAA AACAGAAACCAT AAAATATATGATATACTCTACGCTTTTACGACGATTATTAATGCTGCAGCAAAACAAATACAA AA AAAATCCCCAAA CTACCACTAATTACCACCACTAG CCG TGGAATCGCGGAGTGTCCGTGTGT TAG T TAGGACGTTCGA TAAGTTACAAGTGTAGCTGGAGT GTGTGCTGGGGGGAAAACA A AACAGCAGCGGCGCA                                                                                                                                                                                                                                                                                                           ]


>consensus_5106#0 CCCCCGNGGTTAATTAGCTAATTGGAATGCGCTTTGTTTTTTCTTTGTATATACAAATCG TTGATCTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAATTTTG CACTACTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGAT TTCCCTGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTT AGTAGTTAANGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCT AGAAGGATGAAAAAANAACAACAACAGAAACCATCAAAATATATGATATACTCTACGCTT TTACGACGATTATTAATGCTGCAGCAAAACAAATACAACAACAAAATCCCCAAACCTACC ACTAATTACCACCACTAGCCCGCTGGAATCGCGGAGTGTCCGTGTGTACAGCTNTAGGAC GTTCGACTAAGTTACAAGTGTAGCTGGAGTAGTGTGCTGGGGGGAAAACACANAACAGCA GCGGCGCAGNTGCTCACATGANAACCGACNCATCCACCNCNCNNAATATTATATTTCTTC CAGCATTANGGAAAACACCACCCGAANCGAGTNNACGCTACAACACCACCATTACAACAC TTAAAACNACACCANGAACGTTCNGCAAANACACAACTCGTNNANTACTTTTCCACCCTG ACACGATATTATNNCAATACAGTGTCCCCACGCCCGCCCACATANCCCCNAATCACAACC AACCACGCTCACCGCCTACCTCTCTCTCNTCCCCCCCCTAATCNCNCCCNTCTCTCGCNC ACAACTC



consensusID : consensus_5106#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 556
fasta sequence
                              [CAGATCGCCCCGAGTNNATCTGCTCGCAGAGAATGATATCCCGTTGCAATTACCTGTTTGAAGAGTTTAAGCTAATTGGAATGCGCTTTTGTTTTTTCTTTGTATATACAAATCGTTGATCTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAATTTTGCACTACTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCCTGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAGTTAAGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAGGATGAAAAAAAACAAAACANANAACCACTAAANACTATATGACTATACTCTACGCTNTTTACGACGATTATTAATGCTGCAGCAAAACAAATACAACAAAAAATCCCCAAACTACCACTAATTACCACCACTAGCCGCTGCGAATCGCGCGCAGCTGTCCGTGTGCTTACTTCAGGACGTCGACTAAGTTACAACGT]

[+] EMBL AL934690             [CAGATCGCCCCGAGTNNATCTGCTCGCAGAGAATGATATCCCGTTGCAATTACCTGTTTGAAGAGTTTAAGCTAATTGGAATGCGCTTTTGTTTTTTCTTTGTATATACAAATCGTTGATCTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAATTTTGCACTACTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCCTGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAGTTAAGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAGGATGAAAAAAAACAAAACANANAACCACTAAANACTATATGACTATACTCTACGCTNTTTACGACGATTATTAATGCTGCAGCAAAACAAATACAACAAAAAATCCCCAAACTACCACTAATTACCACCACTAGCCGCTGCGAATCGCGCGCAGCTGTCCGTGTGCTTACTTCAGGACGTCGACTAAGTTACAACGT]


>consensus_5106#1 CAGATCGCCCCGAGTNNATCTGCTCGCAGAGAATGATATCCCGTTGCAATTACCTGTTTG AAGAGTTTAAGCTAATTGGAATGCGCTTTTGTTTTTTCTTTGTATATACAAATCGTTGAT CTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAATTTTGCACTA CTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCC TGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAG TTAAGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAGG ATGAAAAAAAACAAAACANANAACCACTAAANACTATATGACTATACTCTACGCTNTTTA CGACGATTATTAATGCTGCAGCAAAACAAATACAACAAAAAATCCCCAAACTACCACTAA TTACCACCACTAGCCGCTGCGAATCGCGCGCAGCTGTCCGTGTGCTTACTTCAGGACGTC GACTAAGTTACAACGT



consensusID : consensus_5106#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 454
fasta sequence
                              [GAAGAAAAAAACAGACAAGAAGATAAAAACAAAACGATTTAAGCTAATTGGAATGCGCTTTTGTTTTTTCTTTGTATATACAAATCGTTGATCTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAAATTTGCACTACTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCCTGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAGTTAAGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAGGATGAAAAAAAACAAAACAGAAACCATAAAATATATAATATACTCTACGCTTTTACGACAATTATTAATGCTGCAGCAAAACAAATACAAAAAAAACCCCAAACTACCACTAATTACCACCAC]

[+] EMBL BX614133             [GAAGAAAAAAACAGACAAGAAGATAAAAACAAAACGATTTAAGCTAATTGGAATGCGCTTTTGTTTTTTCTTTGTATATACAAATCGTTGATCTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAAATTTGCACTACTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCCTGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAGTTAAGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAGGATGAAAAAAAACAAAACAGAAACCATAAAATATATAATATACTCTACGCTTTTACGACAATTATTAATGCTGCAGCAAAACAAATACAAAAAAAACCCCAAACTACCACTAATTACCACCAC]


>consensus_5106#2 GAAGAAAAAAACAGACAAGAAGATAAAAACAAAACGATTTAAGCTAATTGGAATGCGCTT TTGTTTTTTCTTTGTATATACAAATCGTTGATCTTCCTGAAGAATGAAGTCGGTCGGTGG AGTGGAGTCGTTTCTTCAAAAAATTTGCACTACTTTCGCTTAGAGAGTTAGTAACAAATA ATCAGTGACAGCCACACTGTCCCCGATTTCCCTGAGCTTGGTTTGGTCCACTACGTGTCA CCTATATGTGTATTTGTTAGCAGGTTTAGTAGTTAAGAATTCACATATATACACACGCAT ACACATTAAGCACGTTACTGTAGCCTAGAAGGATGAAAAAAAACAAAACAGAAACCATAA AATATATAATATACTCTACGCTTTTACGACAATTATTAATGCTGCAGCAAAACAAATACA AAAAAAACCCCAAACTACCACTAATTACCACCAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5106#1      CAGATCGCCCCGAGTNNATCTGCTCGCAGAGAATGATATCCCGTTGCAATTACCTGTTTG 60
consensus_5106#2      -------------------------GAAGAAAAAAACAGACAA--GAAGATAAAAACAAA 33
consensus_5106#0      ----------------------------------------------------CCCCCGNG 8
                                                                                  

consensus_5106#1      AAGAGTTTAAGCTAATTGGAATGCGCTTTTGTTTTTTCTTTGTATATACAAATCGTTGAT 120
consensus_5106#2      ACGA-TTTAAGCTAATTGGAATGCGCTTTTGTTTTTTCTTTGTATATACAAATCGTTGAT 92
consensus_5106#0      GTTAATT--AGCTAATTGGAATGCGCTTT-GTTTTTTCTTTGTATATACAAATCGTTGAT 65
                         * **  ******************** ******************************

consensus_5106#1      CTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAATTTTGCACTA 180
consensus_5106#2      CTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAAATTTGCACTA 152
consensus_5106#0      CTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAATTTTGCACTA 125
                      ************************************************** *********

consensus_5106#1      CTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCC 240
consensus_5106#2      CTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCC 212
consensus_5106#0      CTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCC 185
                      ************************************************************

consensus_5106#1      TGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAG 300
consensus_5106#2      TGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAG 272
consensus_5106#0      TGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAG 245
                      ************************************************************

consensus_5106#1      TTAAG-AATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAG 359
consensus_5106#2      TTAAG-AATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAG 331
consensus_5106#0      TTAANGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAG 305
                      ****  ******************************************************

consensus_5106#1      GATGAAAAAAAACAAAACANANAACCACTAAANACTATATGACTATACTCTACGCTNTTT 419
consensus_5106#2      GATGAAAAAAAACAAAACAGAAA----CCATAAAATATATAA-TATACTCTACGCTTTT- 385
consensus_5106#0      GATGAAAAAANAACAACAACAGAAAC-CATCAAAATATATGA-TATACTCTACGCTTTT- 362
                      ********** *  **  * * *    *   * * ***** * ************* ** 

consensus_5106#1      ACGACGATTATTAATGCTGCAGCAAAACAAATACAACAA-AAAATCCCCAAAC-TACCAC 477
consensus_5106#2      ACGACAATTATTAATGCTGCAGCAAAACAAATACAAAAA-AAA--CCCCAAAC-TACCAC 441
consensus_5106#0      ACGACGATTATTAATGCTGCAGCAAAACAAATACAACAACAAAATCCCCAAACCTACCAC 422
                      ***** ****************************** ** ***  ******** ******

consensus_5106#1      TAATTACCACCACTAGCCGCTGCGAATCGCGCGCAGCTGTCCGTGTGCTTA-CTTCAGGA 536
consensus_5106#2      TAATTACCACCAC----------------------------------------------- 454
consensus_5106#0      TAATTACCACCACTAGCCCGCTGGAATCGCG---GAGTGTCCGTGTGTACAGCTNTAGGA 479
                      *************                                               

consensus_5106#1      CGT-CGACTAAGTTACAA-CGT-------------------------------------- 556
consensus_5106#2      ------------------------------------------------------------
consensus_5106#0      CGTTCGACTAAGTTACAAGTGTAGCTGGAGTAGTGTGCTGGGGGGAAAACACANAACAGC 539
                                                                                  

consensus_5106#1      ------------------------------------------------------------
consensus_5106#2      ------------------------------------------------------------
consensus_5106#0      AGCGGCGCAGNTGCTCACATGANAACCGACNCATCCACCNCNCNNAATATTATATTTCTT 599
                                                                                  

consensus_5106#1      ------------------------------------------------------------
consensus_5106#2      ------------------------------------------------------------
consensus_5106#0      CCAGCATTANGGAAAACACCACCCGAANCGAGTNNACGCTACAACACCACCATTACAACA 659
                                                                                  

consensus_5106#1      ------------------------------------------------------------
consensus_5106#2      ------------------------------------------------------------
consensus_5106#0      CTTAAAACNACACCANGAACGTTCNGCAAANACACAACTCGTNNANTACTTTTCCACCCT 719
                                                                                  

consensus_5106#1      ------------------------------------------------------------
consensus_5106#2      ------------------------------------------------------------
consensus_5106#0      GACACGATATTATNNCAATACAGTGTCCCCACGCCCGCCCACATANCCCCNAATCACAAC 779
                                                                                  

consensus_5106#1      ------------------------------------------------------------
consensus_5106#2      ------------------------------------------------------------
consensus_5106#0      CAACCACGCTCACCGCCTACCTCTCTCTCNTCCCCCCCCTAATCNCNCCCNTCTCTCGCN 839
                                                                                  

consensus_5106#1      --------
consensus_5106#2      --------
consensus_5106#0      CACAACTC 847
                              




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)