These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5106#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 847 fasta sequence [CCCCCGNGGTTAATTAGCTAATTGGAATGCGCTTTGTTTTTTCTTTGTATATACAAATCGTTGATCTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAATTTTGCACTACTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCCTGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAGTTAANGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAGGATGAAAAAANAACAACAACAGAAACCATCAAAATATATGATATACTCTACGCTTTTACGACGATTATTAATGCTGCAGCAAAACAAATACAACAACAAAATCCCCAAACCTACCACTAATTACCACCACTAGCCCGCTGGAATCGCGGAGTGTCCGTGTGTACAGCTNTAGGACGTTCGACTAAGTTACAAGTGTAGCTGGAGTAGTGTGCTGGGGGGAAAACACANAACAGCAGCGGCGCAGNTGCTCACATGANAACCGACNCATCCACCNCNCNNAATATTATATTTCTTCCAGCATTANGGAAAACACCACCCGAANCGAGTNNACGCTACAACACCACCATTACAACACTTAAAACNACACCANGAACGTTCNGCAAANACACAACTCGTNNANTACTTTTCCACCCTGACACGATATTATNNCAATACAGTGTCCCCACGCCCGCCCACATANCCCCNAATCACAACCAACCACGCTCACCGCCTACCTCTCTCTCNTCCCCCCCCTAATCNCNCCCNTCTCTCGCNCACAACTC] [+] EMBL AL692968 [CCCCCGNGGTTAATTAGCTAATTGGAATGCGCTTTGTTTTTTCTTTGTATATACAAATCGTTGATCTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAATTTTGCACTACTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCCTGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAGTTAANGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAGGATGAAAAAANAACAACAACAGAAACCATCAAAATATATGATATACTCTACGCTTTTACGACGATTATTAATGCTGCAGCAAAACAAATACAACAACAAAATCCCCAAACCTACCACTAATTACCACCACTAGCCCGCTGGAATCGCGGAGTGTCCGTGTGTACAGCTNTAGGACGTTCGACTAAGTTACAAGTGTAGCTGGAGTAGTGTGCTGGGGGGAAAACACANAACAGCAGCGGCGCAGNTGCTCACATGANAACCGACNCATCCACCNCNCNNAATATTATATTTCTTCCAGCATTANGGAAAACACCACCCGAANCGAGTNNACGCTACAACACCACCATTACAACACTTAAAACNACACCANGAACGTTCNGCAAANACACAACTCGTNNANTACTTTTCCACCCTGACACGATATTATNNCAATACAGTGTCCCCACGCCCGCCCACATANCCCCNAATCACAACCAACCACGCTCACCGCCTACCTCTCTCTCNTCCCCCCCCTAATCNCNCCCNTCTCTCGCNCACAACTC] [+] EMBL BX609776 [ aaGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAGGATGAAAAAA AACAA AACAGAAACCAT AAAATATATGATATACTCTACGCTTTTACGACGATTATTAATGCTGCAGCAAAACAAATACAA AA AAAATCCCCAAA CTACCACTAATTACCACCACTAG CCG TGGAATCGCGGAGTGTCCGTGTGT TAG T TAGGACGTTCGA TAAGTTACAAGTGTAGCTGGAGT GTGTGCTGGGGGGAAAACA A AACAGCAGCGGCGCA ] consensusID : consensus_5106#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 556 fasta sequence [CAGATCGCCCCGAGTNNATCTGCTCGCAGAGAATGATATCCCGTTGCAATTACCTGTTTGAAGAGTTTAAGCTAATTGGAATGCGCTTTTGTTTTTTCTTTGTATATACAAATCGTTGATCTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAATTTTGCACTACTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCCTGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAGTTAAGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAGGATGAAAAAAAACAAAACANANAACCACTAAANACTATATGACTATACTCTACGCTNTTTACGACGATTATTAATGCTGCAGCAAAACAAATACAACAAAAAATCCCCAAACTACCACTAATTACCACCACTAGCCGCTGCGAATCGCGCGCAGCTGTCCGTGTGCTTACTTCAGGACGTCGACTAAGTTACAACGT] [+] EMBL AL934690 [CAGATCGCCCCGAGTNNATCTGCTCGCAGAGAATGATATCCCGTTGCAATTACCTGTTTGAAGAGTTTAAGCTAATTGGAATGCGCTTTTGTTTTTTCTTTGTATATACAAATCGTTGATCTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAATTTTGCACTACTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCCTGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAGTTAAGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAGGATGAAAAAAAACAAAACANANAACCACTAAANACTATATGACTATACTCTACGCTNTTTACGACGATTATTAATGCTGCAGCAAAACAAATACAACAAAAAATCCCCAAACTACCACTAATTACCACCACTAGCCGCTGCGAATCGCGCGCAGCTGTCCGTGTGCTTACTTCAGGACGTCGACTAAGTTACAACGT] consensusID : consensus_5106#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 454 fasta sequence [GAAGAAAAAAACAGACAAGAAGATAAAAACAAAACGATTTAAGCTAATTGGAATGCGCTTTTGTTTTTTCTTTGTATATACAAATCGTTGATCTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAAATTTGCACTACTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCCTGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAGTTAAGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAGGATGAAAAAAAACAAAACAGAAACCATAAAATATATAATATACTCTACGCTTTTACGACAATTATTAATGCTGCAGCAAAACAAATACAAAAAAAACCCCAAACTACCACTAATTACCACCAC] [+] EMBL BX614133 [GAAGAAAAAAACAGACAAGAAGATAAAAACAAAACGATTTAAGCTAATTGGAATGCGCTTTTGTTTTTTCTTTGTATATACAAATCGTTGATCTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAAATTTGCACTACTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCCTGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAGTTAAGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAGGATGAAAAAAAACAAAACAGAAACCATAAAATATATAATATACTCTACGCTTTTACGACAATTATTAATGCTGCAGCAAAACAAATACAAAAAAAACCCCAAACTACCACTAATTACCACCAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5106#1 CAGATCGCCCCGAGTNNATCTGCTCGCAGAGAATGATATCCCGTTGCAATTACCTGTTTG 60 consensus_5106#2 -------------------------GAAGAAAAAAACAGACAA--GAAGATAAAAACAAA 33 consensus_5106#0 ----------------------------------------------------CCCCCGNG 8 consensus_5106#1 AAGAGTTTAAGCTAATTGGAATGCGCTTTTGTTTTTTCTTTGTATATACAAATCGTTGAT 120 consensus_5106#2 ACGA-TTTAAGCTAATTGGAATGCGCTTTTGTTTTTTCTTTGTATATACAAATCGTTGAT 92 consensus_5106#0 GTTAATT--AGCTAATTGGAATGCGCTTT-GTTTTTTCTTTGTATATACAAATCGTTGAT 65 * ** ******************** ****************************** consensus_5106#1 CTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAATTTTGCACTA 180 consensus_5106#2 CTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAAATTTGCACTA 152 consensus_5106#0 CTTCCTGAAGAATGAAGTCGGTCGGTGGAGTGGAGTCGTTTCTTCAAAAATTTTGCACTA 125 ************************************************** ********* consensus_5106#1 CTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCC 240 consensus_5106#2 CTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCC 212 consensus_5106#0 CTTTCGCTTAGAGAGTTAGTAACAAATAATCAGTGACAGCCACACTGTCCCCGATTTCCC 185 ************************************************************ consensus_5106#1 TGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAG 300 consensus_5106#2 TGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAG 272 consensus_5106#0 TGAGCTTGGTTTGGTCCACTACGTGTCACCTATATGTGTATTTGTTAGCAGGTTTAGTAG 245 ************************************************************ consensus_5106#1 TTAAG-AATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAG 359 consensus_5106#2 TTAAG-AATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAG 331 consensus_5106#0 TTAANGAATTCACATATATACACACGCATACACATTAAGCACGTTACTGTAGCCTAGAAG 305 **** ****************************************************** consensus_5106#1 GATGAAAAAAAACAAAACANANAACCACTAAANACTATATGACTATACTCTACGCTNTTT 419 consensus_5106#2 GATGAAAAAAAACAAAACAGAAA----CCATAAAATATATAA-TATACTCTACGCTTTT- 385 consensus_5106#0 GATGAAAAAANAACAACAACAGAAAC-CATCAAAATATATGA-TATACTCTACGCTTTT- 362 ********** * ** * * * * * * ***** * ************* ** consensus_5106#1 ACGACGATTATTAATGCTGCAGCAAAACAAATACAACAA-AAAATCCCCAAAC-TACCAC 477 consensus_5106#2 ACGACAATTATTAATGCTGCAGCAAAACAAATACAAAAA-AAA--CCCCAAAC-TACCAC 441 consensus_5106#0 ACGACGATTATTAATGCTGCAGCAAAACAAATACAACAACAAAATCCCCAAACCTACCAC 422 ***** ****************************** ** *** ******** ****** consensus_5106#1 TAATTACCACCACTAGCCGCTGCGAATCGCGCGCAGCTGTCCGTGTGCTTA-CTTCAGGA 536 consensus_5106#2 TAATTACCACCAC----------------------------------------------- 454 consensus_5106#0 TAATTACCACCACTAGCCCGCTGGAATCGCG---GAGTGTCCGTGTGTACAGCTNTAGGA 479 ************* consensus_5106#1 CGT-CGACTAAGTTACAA-CGT-------------------------------------- 556 consensus_5106#2 ------------------------------------------------------------ consensus_5106#0 CGTTCGACTAAGTTACAAGTGTAGCTGGAGTAGTGTGCTGGGGGGAAAACACANAACAGC 539 consensus_5106#1 ------------------------------------------------------------ consensus_5106#2 ------------------------------------------------------------ consensus_5106#0 AGCGGCGCAGNTGCTCACATGANAACCGACNCATCCACCNCNCNNAATATTATATTTCTT 599 consensus_5106#1 ------------------------------------------------------------ consensus_5106#2 ------------------------------------------------------------ consensus_5106#0 CCAGCATTANGGAAAACACCACCCGAANCGAGTNNACGCTACAACACCACCATTACAACA 659 consensus_5106#1 ------------------------------------------------------------ consensus_5106#2 ------------------------------------------------------------ consensus_5106#0 CTTAAAACNACACCANGAACGTTCNGCAAANACACAACTCGTNNANTACTTTTCCACCCT 719 consensus_5106#1 ------------------------------------------------------------ consensus_5106#2 ------------------------------------------------------------ consensus_5106#0 GACACGATATTATNNCAATACAGTGTCCCCACGCCCGCCCACATANCCCCNAATCACAAC 779 consensus_5106#1 ------------------------------------------------------------ consensus_5106#2 ------------------------------------------------------------ consensus_5106#0 CAACCACGCTCACCGCCTACCTCTCTCTCNTCCCCCCCCTAATCNCNCCCNTCTCTCGCN 839 consensus_5106#1 -------- consensus_5106#2 -------- consensus_5106#0 CACAACTC 847 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||