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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5109#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1096 fasta sequence
[GCAGATCCCCCNAGTTATCAGGTGGGGTGAT-AGCGGCA-CGCTTAATCCTNGCCCTCGTTTGCAGCGGAAACGCCGCACGCCACACATTATCAGTCCGGCTCGCGGCGGTTGACATCAGTCAAGATTAATCTCTCGGTGAAAATCAACATGAGCGAAGGCGGTAGTAACGAGGGCGCGGAATCGCCGCCGCCGTCGAGCTCCGCGGGGGTTGACTCGACTGGCACCTCCGAAACCACAGCACCTGTGCCACCGTTGCCACCGCGGGAACATTTGATCGTGACTGCCGTAAAGTTCCTCAACAA-CCGAACGTAGTTCGCAGTGCCATAACGAAGAAGCAGGCGTTCCTGCGCTCCAAAGGACTGTCGGAGGATGAGATACAGATTGCGTGCGAGCGAGCGGGCGTCTTTACGACCAGCCCCACACAACAGACGGTCATCAGCATGGGTGTGGAGTCGAGTGGTGGCGGTAACTATGCCAAGCCCGGTTACCAAATTCAGCCAAGGCAAAACTTCCTTACCCGCATGAAGGACATGCTCAGCTCGGTGGCCCTACTGAGCGGACTGATGTATGGCGTGTACTTGTTCTATAAGAAATTCATTGAACCGCTGCTGTTCCGCAGCAAGAAGAAGAAAACCGTCACCGAACAGCTGACGGAGCTTAATCAGACGATGACNGTGAAGATTGACACGCTGAGTGCCGAGCTGAGCAAAATCAAGGGCGAACTGAACCAGGTAAACCAANCC-ATGCGACCGTAAAGGAGCTGGCCAACTTTAAGGGCGATCTTGATTCGATTAAGGGACTCCTATTGAACAGAAAACAATTCGCCGCACCAAACCTTCCGGTCGTTCCACCGTCCATCCCGGCATGGCAGCTACGTTCCCAGCAACATCAACCGGCCAGCAGCGAGGGCGAGCACGACAAGCACGACGACAACGACACCGGATCGGGTTCTGGGTCGAGTGAAAATGATGTCGTCCTGAAGAACAGCGACAGCAGCCTGGAGATTATATCTTAAACGGTCGAACAATGTGAATGCACCGCACTGCTGGAGAGGAGTGAACCTTCCGGGGGAGGAGTGAACAACAACCGCCGTACG]
[+] EMBL AL692997 [GCAGATCCCCCNAGTTATCAGGTGGGGTGAT AGCGGCA CGCTTAATCCTNGCCCTCGTTTGCAGCGGAAACGCCGCACGCCACACATTATCAGTCCGGCTCGCGGCGGTTGACATCAGTCAAGATTAATCTCTCGGTGAAAATCAACATGAGCGAAGGCGGTAGTAACGAGGGCGCGGAATCGCCGCCGCCGTCGAGCTCCGCGGGGGTTGACTCGACTGGCACCTCCGAAACCACAGCACCTGTGCCACCGTTGCCACCGCGGGAACATTTGATCGTGACTGCCGTAAAGTTCCTCAACAA CCGAACGTA ]
[+] EMBL BX627784 [ GGGGTGATAAGCGGCACCGCTTAATCCTCGCCCTCGTTTGCAGCGGAAACGCCGCACGCCACACATTATCAGTCCGGCTCGCGGCGGTTGACATCAGTCAAGATTAATCTCTCGGTGAAAATCAACATGAGCGAAGGCGGTAGTAACGAGGGCGCGGAATCGCCGCCGCCGTCGAGCTCCGCGGGGGTTGACTCGACTGGCACCTCCGAAACCACAGCACCTGTGCCACCGTTGCCACCGCGGGAACATTTGATCGTGACTGCCGTAAAGTTCCTCAACAACCCGAACGTAGTTCGCAGTGCCATAACGAAGAAGCAGGCGTTCCTGCGCTCCAAAGGACTGTCGGAGGATGAGATACAGATTGCGTGCGAGCGAGCGGGCGTCTTTACGACCAGCCCCACACAACAGACGGTCATCAGCATGGGTGTGGAGTCGAGTGGTGGCGGTAACTATGCCAAGCCCGGTTACCAAATTCAGCCAAGGCAAAACTTCCTTACCCGCATGAAGGACATGCTCAGCTCGGTGGCCCTACTGAGCGGACTGATGTATGGCGTGTACTTGTTCTATAAGAAATTCATTGAACCGCTGCTGTTCCGCAGCAAGAAGAAGAAAACCGTCACCGAACAGCTGACGGAGCTTAATCAGACGATGACNGTGAAGATTGACACGCTGAGTGCCGAGCTGAGCAAAATCAAGGGCGAACTGAACCAGGTAAACCAANCC ATGCGACCGTAAAGG ]
[+] EMBL BX623075 [ GAAATTCATTGAACCGNTGCTGTTCCGCAGCAAGAAGAAGAAAACCGTCACCGAACAGCTGACGGAGCTTAATCAGACGATGACGGTGAAGATTGACACGCTGAGTGCCGAGCTGAGCAAAATCAAGGCCGAACTGAACCAGGTAAACCAAACCAATGCGACCGTAAAGGAGCTGGCCAACTTTAAGGGCGATCTTGATTCGATTAAGGGACTCCTATTGAACAGAAAACAATTCGCCGCACCAAACCTTCCGGTCGTTCCACCGTCCATCCCGGCATGGCAGCTACGTTCCCAGCAACATCAACCGGCCAGCAGCGAGGGCGAGCACGACAAGCACGACGACAACGACACCGGATCGGGTTCTGGGTCGAGTGAAAATGATGTCGTCCTGAAGAACAGCGACAGCAGCCTGGAGATTATATCTTAAACGGTCGAACAATGTGAATGCACCGCACTGCTGGAGAGGAGTGAACCTTCCGGGGGAGGAGTGAACAACAACCGCCGTACG]
consensusID : consensus_5109#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1039 fasta sequence
[GCAGAATGCCCGAGGTTTACGTAAAGGAGCTGGCCAACTTTAAGTGGCGATCTTGTATTCGATTAAGTGGACTCCTATTGAACAGAAAACAATTCGCCGACAAACCTTCCGGTCGTTCCACCGTCCATCCCGGCATGGCAGCCTACGGTTTCCCCAGCCAACCAATTCAAACCGGGCCAAGCAAGCGAAGGGCGAAGCACCGAAAAAGCCAACCGGACGGAACAAACGGACCANCCGGGAATTCGGGGTTTCCTGGGGTTCNGAGTTGACACAACTTGATTGTTCCGTCCCTTGAAAGAAACCAAGGCGAACCAAGGGCAAGGCCCTTGGAACGGAATTAAGGCATTAATTCTTTTACACACACCGGGGTTCCGGAAACCAAAAGTGGTTGANAANTTTGCACCCGGAACCTTGGGCTTGGGAACGAAGCGGACGGTTGAAANACCCTTTTTCCCGGGGGTCGGGAACGGNGGAACGTTGGAAACCAAAACAAAACCCCGGGCCGGTAACCGCAAACACGGGGAAATGACTGGGCCGGCCAATTTTCCTTAAAACAACGCCCGAACAACATAACCAAGGAAAAAGCCTGGAGGTTCACCCAACCTGGAGGGTTTGGTCGGCTTTGCGCCCAACCGTTCTCTCGGTTACACAACAAAGCGGNGGGCCCCCAAATTCCCTTAATTTTTTTNACAACCAAAGCCCTGGATTAAACGACCANTTTCATCTTTCATGGGGAACNCGGAAACTTTTTAACTTTGGTGGGCCCACAACAAGGCTGGCAAACACGCGGGGTCCTGGGAAAGAGCCCGGCACAACTTTGGGAAATTTCCAAACCAAATTGGGAAAAAAAAACCGCCCCGGAAAGAACATCACGCGCCCNGGGAACGTAGCCAACCAACTTTTCTTTACAGGGCACTTTGGTGCACAACAAGGCGGCGAAATCTTTAACTTTNAATACATTTCCCGNAAGTTTTCATTTCCCAAAATNAGAAGTCTTCCCGTGAGTATGGNGCCCACAACATTAATTNNGGATTTTGGG]
[+] EMBL AL696411 [GCAGAATGCCCGAGGTTTACGTAAAGGAGCTGGCCAACTTTAAGTGGCGATCTTGTATTCGATTAAGTGGACTCCTATTGAACAGAAAACAATTCGCCGACAAACCTTCCGGTCGTTCCACCGTCCATCCCGGCATGGCAGCCTACGGTTTCCCCAGCCAACCAATTCAAACCGGGCCAAGCAAGCGAAGGGCGAAGCACCGAAAAAGCCAACCGGACGGAACAAACGGACCANCCGGGAATTCGGGGTTTCCTGGGGTTCNGAGTTGACACAACTTGATTGTTCCGTCCCTTGAAAGAAACCAAGGCGAACCAAGGGCAAGGCCCTTGGAACGGAATTAAGGCATTAATTCTTTTACACACACCGGGGTTCCGGAAACCAAAAGTGGTTGANAANTTTGCACCCGGAACCTTGGGCTTGGGAACGAAGCGGACGGTTGAAANACCCTTTTTCCCGGGGGTCGGGAACGGNGGAACGTTGGAAACCAAAACAAAACCCCGGGCCGGTAACCGCAAACACGGGGAAATGACTGGGCCGGCCAATTTTCCTTAAAACAACGCCCGAACAACATAACCAAGGAAAAAGCCTGGAGGTTCACCCAACCTGGAGGGTTTGGTCGGCTTTGCGCCCAACCGTTCTCTCGGTTACACAACAAAGCGGNGGGCCCCCAAATTCCCTTAATTTTTTTNACAACCAAAGCCCTGGATTAAACGACCANTTTCATCTTTCATGGGGAACNCGGAAACTTTTTAACTTTGGTGGGCCCACAACAAGGCTGGCAAACACGCGGGGTCCTGGGAAAGAGCCCGGCACAACTTTGGGAAATTTCCAAACCAAATTGGGAAAAAAAAACCGCCCCGGAAAGAACATCACGCGCCCNGGGAACGTAGCCAACCAACTTTTCTTTACAGGGCACTTTGGTGCACAACAAGGCGGCGAAATCTTTAACTTTNAATACATTTCCCGNAAGTTTTCATTTCCCAAAATNAGAAGTCTTCCCGTGAGTATGGNGCCCACAACATTAATTNNGGATTTTGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5109#0 GCAGATCCCCCNAGTTATCAGGTGGGGTGATAGCGGCACGCTTAATCCTNGCCCTCGTTT 60
consensus_5109#1 GCAGAATGCCCGAGGTTTACGTAAAGGAGCTGGC--CAACTTTAAGTGGCGATCTTGTAT 58
***** *** ** * * * ** * * ** ** **** * ** ** *
consensus_5109#0 GCAGCGGAAACGCCGCACGCCACACATTATCAGTCCGGCTCGCGGCGGTTGACATCAGTC 120
consensus_5109#1 TCGATTAAGTGGACTCCTATTGAACAG----AAAACAATTCGC--CGACAAACCT---TC 109
* * * * * *** * * **** ** ** * **
consensus_5109#0 AAGATTAATCTCTCGGTGAAAATCAACATGAGCGAAGGCGGTAGTAACGAGGGCGCGGAA 180
consensus_5109#1 CGG--TCGTTCCACCGTCCATCCCGGCATGGCAGCCTACGGT--TTCCCCAGCCAACCAA 165
* * * * * ** * * **** * **** * * * * **
consensus_5109#0 TCGCCGCCGCCGTCGAGCTCCGCGGGGGTTGACTCGACTGGCACCTCCGAAACCACAGCA 240
consensus_5109#1 TTCAAACCGG-GCCAAGCAA-GCGAAGGGCGA-------AGCACCGAAAAAGCCAACCGG 216
* *** * * *** *** ** ** ***** ** ***
consensus_5109#0 CCTGTGCCACCGTTGCCACCGCGGGAACATTTGATCGTGACTGCCGTAAAGTTCCTCAAC 300
consensus_5109#1 ACGGAACAAACGG-ACCANC-CGGGAAT------TCGGGGTTTCC-TGGGGTTCNGAGTT 267
* * * * ** *** * ****** *** * * ** * ****
consensus_5109#0 AACCGAACGTAGTT-CGCAGTGCCATAACGAAGAAGCAGGCGTTCCTGCGCTCCAAAGGA 359
consensus_5109#1 GACACAACTTGATTGTTCCGTCCCTTGAAAGAAACCAAGGCGAACCAAGGG--CAAGGCC 325
** *** * ** * ** ** * * * * ***** ** * *** *
consensus_5109#0 CTGTCGGAGGA--TGAGATACAGATTGCGTGCGAGCGAGCGGGCGTCTTTACGACCAGCC 417
consensus_5109#1 CTTGGAACGGAATTAAGGCATTAATT-CTTTTACACACACCGGGGTTCCGGAAACCAAAA 384
** *** * ** * *** * * * * ** ** ****
consensus_5109#0 CCACACAACAGACGGTCATCAGCATGGGTGTGGAGTCGAGTGGTGGCGGTAACTATGCCA 477
consensus_5109#1 GTGGTTGANAANTTTGCACCCGGAACCTTGGGCTTGGGAACGAAGCGGACGGTTGAAANA 444
* * ** * * * ** * ** * * * * *
consensus_5109#0 AGCCCGGTTACCAAATTCAGCCAAGGCAAAACTTCCTTACCCGCATGAAGGACATGCTCA 537
consensus_5109#1 CCCTTTTTCCCGGGGGTCGGGAACGGNGGAACGTTGGAAACCA----AAACAAAACCCCG 500
* * * ** * * ** *** * * ** ** * * * *
consensus_5109#0 GCTCGGTGGCCCTACTGAGCGGACTGATGTATGGCGTGTACT-TGTTCTATAAGAAATTC 596
consensus_5109#1 GGCCGGTAACCGCAA-ACACGGGGAAATGACTGGGCCGGCCAATTTTCCTTAAAACAACG 559
* **** ** * *** *** *** * * * *** *** * *
consensus_5109#0 ATTGAACCGCTGCTGTTCCGCAGCAAGAAGAAGAAAACCGTCACCGAACAGCTGACGGAG 656
consensus_5109#1 CCCGAACAAC----ATAACCAAGGAAAAAGCCTGGAGGT-TCACCCAAC--CTGGAGG-G 611
**** * * * ** ** *** * ***** *** *** ** *
consensus_5109#0 CTTAATCAGACGATGACNGTGAAGATTGACACGCTGAGTGCCGAGCTGAGCAAAATCAAG 716
consensus_5109#1 TTTGGTC-GGCTTTGCGCCCAACCGTTCTCTCGGT---TACACAACAAAGCGGNGG-GCC 666
** ** * * ** * ** * ** * * * * * ***
consensus_5109#0 GGCGAACTGAACCAGGTAAACCAANCCATGCGACCGTAAAGGAGCTGGCCAACTTTAAGG 776
consensus_5109#1 CCCAAATTCCCTTAATTTTTTTNACAACCAAAGCCCTGGATTAAACGACCANTTTCATCT 726
* ** * * * * ** * * * * *** ** *
consensus_5109#0 GCGATCTTGATTCGATTAAGGGACTCCTATTGAACAGAAAACAATTCGCCGCACCAAACC 836
consensus_5109#1 TTCATGGGGAACNCGGAAACTTTTTAACTTTGGTGGGCCCACAACAAGGC-TGGCAAACA 785
** ** ** * *** * **** * * *****
consensus_5109#0 TTCCGGTCGTTCCACCGTCCATCCCGGCATGGC---AGCTACGTTCCCAGCAACATCA-- 891
consensus_5109#1 CGCGGG--GTCCTGGGAAAGAGCCCGGCACAACTTTGGGAAATTTCCAAACCAAATTGGG 843
* ** ** * * ******* * * * **** * * * **
consensus_5109#0 ACCGGCCAGCAGCGAGGGCGAGCACGACAAGCACGACGACAACGACACCGGATCGGGTTC 951
consensus_5109#1 AAAAAAAAACCGCCCCGGAAAGAACATCACGCGCCCNGGGAACGTAGCCA-ACCAACTTT 902
* * * ** ** ** ** ** ** * * **** ** * * **
consensus_5109#0 TGGGTCGAGTGAAAATGATGTCGTCCTGAAGAACAGCGACAGC---AGCCTGGAGATTAT 1008
consensus_5109#1 T--CTTTACAGGGCACTTTGGTGCACAACAAGGCGGCGAAATCTTTAACTTTNAATACAT 960
* * * * * ** * * * * **** * * * * * * **
consensus_5109#0 ATCTTAAACGGTCGAACAATGTGAATGCACCGCACTGCTGGAGAGGAGTGAACCTTCCGG 1068
consensus_5109#1 TTCCCGNAAGTTTTCATTTCCCAAAATNAGAAGTCTTCCCGTGAGTATGGNGCCCACAAC 1020
** * * * * ** * ** * * *** * * ** *
consensus_5109#0 GGGAGGAGTGAACAACAACCGCCGTACG 1096
consensus_5109#1 ATTAATTNNGGATTTTGGG--------- 1039
* * *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||